Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                --------->HSFB2a(1)                                              <---                            --------->ANAC58                                                     ----                            --------->ANAC58                          ------>ZmHOX2a(1)          <---                 <----------DOF2<---------HSFC1(2)                    ----------->RAV1(2)       -----           --------->HSFC1(2)   --------->HSFC1(2)                <---------ARR14(2)            -----           <---------HSFB2a(1)  <---------HSFB2a(1)        ---------->DOF2                 <---------LBD16           <---------HSFC1(2)  ------->TEIL             ----------->RAV1(2)     <---------ICU4<------NtERF2 --------->RAV1(2)   <---------AtLEC2                   <---------ANAC46       <---------YAB1-------- ---->TEIL --------->HSFB2a(1)<---------ARR11(3)   --------->YAB1 --------->ARR14(2) ----------->RAV1(2)   tacctggtgaagaaggttcctttgcatagcaagaaccttcttgctcttgtcaatggtagcctgaagcgcatcctctggctcatcatcgtctgagccggaa  65500        <------NtERF2        <---------At4g35610      <---------DEAR3(1)     ------>NtERF2    --------->ANAC46    <---------O2   <---------REM1(2) ----------->HVH21                                                                          <-------- ----->HSFB2a(1)                              --------->LBD16   --------->ANAC58      --------->ANAC58 ------HSFB2a(1)                              <---------HSFB2a(2)              <---------ICU4-------- ----->HSFC1(2)                  --------->LBD16                --------->ANAC58 <---------YAB1 ------HSFC1(2)      <---------AtLEC2 ---------->DOF2 ---------->DOF2          --------->YAB1<------- ---->ANAC58   <---------ALFIN1 <---------HSFB2a(2)--------->ANAC58           <---------ATHB12------- ---->ANAC58 <---------ALFIN1   --------->HSFB2a(2)--------->ANAC58     ----------->GT1  --------->CCA1(2) ->LBD16--------->At4g35610 <-----------HVH21 --------->HSFB2a(2)  <-----------RAV1(2)--------->ANAC58   gcctcgacgcggctcacacacttgcatcgatgtcccagaacaaagctccgagaacgaaaagacagcgagccagaaggcaaatcatggtaagaaacacggg  65600                                                                               <---------------AGL15                                                                               --------------->AGL15        --------->ZAT14                                                       =======================        <---------ZAT14                                                       ----------------->AGL3      <---------At4g35610                                                     ----------------->AGL2      --------->At4g35610                                                     ----------------->AGL1    ---------->CDC5         <----------CDC5                                 --------->bZIP60(1) -LBD16<---------ANAC46    --------->At4g35610          ---------->DOF2--------->At4g35610 ->ANAC46                  <---------At4g35610        <------ZmHOX2a(1)<---------At4g35610 --ANAC55(2)           ----------->HVH21 ----------->HVH21          <------NtERF2                  <- -->LBD16     <------ZmHOX2a(1)      --------->ATHB12<----------ID1--------->ANAC46           -------   aatgcctcagcgtagaggaattgatgcgacgctgagtcttgatttgacagagaagaggaaaagagctctcggcaactgatgccatttacagaaaaataaa  65700                                <------ZmHOX2a(2)                               <---------ARR14(2)                      --------->ZAT14   <----------DOF2    <---------ZAT14   <---------------AGL15       --------->ARR14(2)   --------------->AGL15   <---------At4g35610                --------->ANAC46                ------- ==================MADS_MADS  --------->At4g35610            --------->LBD16                 ------>MYB83 ----------GT1   <---------At4g35610                       <---------LBD16                   ------>MYB46(1) --->DOF2        --------->At4g35610                   <-------TEIL                        <---------MYB59   gtttccttttttaagtatgagcagagcagagcagatcagacacaaacttgaacaagtttcatccgcgaaatcgaacagagctaattgagaaaaccgaacc  65800                                                     --------->DAG2                                                    *TSS                                           --------->YAB1                               <------NtERF2        ---------->DOF2                             --------->ETT(1)    --------->AHL20(2)                          <-----------RAV1(1)   --------->AHL20(2)                                  <                        <----------DOF2----------->GT1                       <---------MYB46(3)   ---            ---------->DOF2  <---------ANAC46 --------->YAB1            <---------ZAT14          <--- >TEIL    ------>ZmHOX2a(2)<-----------HVH21--------->AHL20(2) <----------DOF2                 ------   tagactagatgatccaaagaagaaggctttgtcggagagtagcgataaaaataaaaaagggaatgctttgtgagtgaagttgttgttaaccaagagggag  65900                                                                        --------->YAB1                                                                  --------->YAB1                   --                                                                 <-------TEIL                      --          ---------->DOF2                                  <---------ANAC58                    ------ ------ZmHOX2a(1)                                          <---------ANAC46                  <------- --------------------->ANAC81                              <---------ANAC58       <---------YAB1   -- ---ZmHOX2a(1)                                             --------->ANAC55(2)  --------->YAB1 ====== --->ALFIN1                   ------------>CBF             <---------ANAC55(2) <---------YAB1--------   gaggaatcaaacaaaagaagagagaatggggacacaatgagcgaaatcaccataaactctcgcgtgattcatgagcataatattatgatgcaattgatct  66000       --------->AHL20(2)  <---------ALFIN1                                                            <----------DOF2  ----------->RAV1(1)                                                    <----------DOF2 ------->ANAC46                                                  <---------ETT(2) ------->ANAC58          <---------GLK1(2)                    --------->GLK1(1) >ZmHOX2a(2)             <---------ARR11(3)                  <---------ARR14(2) --ARR11(3)              --------->ARR11(3)                  --------->ARR14(2) ------->ANAC58     ------>ZmHOX2a(1)                        <---------ARR11(3)             --------- ==========================HOX2a_HOX2a             --------->ANAC46 <---------ALFIN1      <---------LBD16 ->ARR11(3)  <---------YAB1            --------->TOE2(3)     --------->ARR11(3)    --------->YAB1   ctcgccacataaatttttattcctcgagattttcttcgtaatctaaatcgtccacaaaatacagatatcgacactcttttctttagcataactccggaat  66100                                                  <---------MYB55(2)                                                  --------->MYB46(3)                         ---------->DOF2         <---------ALFIN1                     --------->TOE2(3)         <---------ALFIN1               --------->GLK1(1)               <---------ICU4                 --------->ATERF1(1)    <---------ARR11(3)               <---------AHL20(2)    <---------YAB1                --------->ANAC58              --------->AHL20(2)    <---------TOE2(3)     *TSS     --------->ANAC58   --------->DAG2  <----------DOF2    --------->TOE1(3)--------->ATHB12   <------------CBF     <---------GLK1(1)<----- >LBD16     --------->YAB1      <------------CBF------>NtERF2      --------->ANAC46  ---------->DOF2   aaaactttattgaataataaataccttaaaagaaaattgatgatttgggccaccctccaaattgttttcaagaaattcagaattccataaagcatttttt  66200                              --------->ANAC55(2)                              <---------ANAC55(2)                             <---------TOE2(3)                         --------->YAB1                      ----------->GT1                 --------->AHL20(2)               <---------------AGL15                                                  <---------ICU4               --------------->AGL15                                     <---------AHL20(2)         <---------AHL20(2) --------->MYB52(1)                   --------->TOE2(3)   <---------ATHB12        --------->AHL20(2)  <-----------GT1     <---------YAB1  ----------->GT1----------->GT1   <-----------GT1    --------->YAB1            <---------AHL20(2)      --------->AHL20(2)<---------AHL20(2) ------GT1    <---------ANAC55(2)--------->MYB52(1)             <----------ID1 <---------ZAT6   caattttacatttaatacataaaatagtaataacgtaactgaacatattttttattacaaaaaaaaacgtcaaattttatagagtaaatcattttttttg  66300                                                --------->MYB52(1)                                        --------->YAB1                            <---------ANAC46                                        <-----------GT1                  --------->WRKY12                                     <---------ICU4                      --------->WRKY38(1)                                    --------->AHL20(2)                 --------->At4g35610 ----------                                    <---------AHL20(2)                 <-------GAMYB     <---------ANAC46                 <----------ID1 --------->AHL20(2)        --------->AHL20(2)  <---------ZAT14    <---             ---------->DOF2    <---------AHL20(2)      ----------->GT1<---------At4g35610<---------TOE2(3)   ttaatagaaaacaaacaaagaaacaaaacgtagttttattaattacaatataacggataagttaataacattcagttgactactgtgtgtttagggtata  66400  Previous    Next  AGI:  At3g01180.1    Description:  ATSS2 (STARCH SYNTHASE 2); transferase, transferring glycosyl groups. similar to ATSS1/SSI (STARCH SYNTHASE I), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G24300.1); similar to starch synthase II [Amaranthus cruentus] (GB:ABA64552.1); similar to granule bound starch synthase II precursor [Manihot esculenta] (GB:AAF13168.1); similar to Granule-bound starch synthase 2, chloroplast precursor (Granule-bound starch synthase II) (SS II) (GBSS-II) (GB:Q43847); contains InterPro domain Starch synthase catalytic region (InterPro:IPR013534); contains InterPro domain Glycogen/starch synthases, ADP-glucose type; (InterPro:I Range:  from: 62252    to: 65852    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g01185.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G21655.1); contains InterPro domain Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502) Range:  from: 66158    to: 66987    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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