Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <---------YAB1                          --------->AHL20(2) ----->ZmHOX2a(2)                               <---------AHL20(2) ------->CCA1(2)                               <---------AHL20(2) -----ZmHOX2a(2)                            <---------YAB1 ------>AGP1                    <---------AHL20(2)        ----------->GT1 -------ARR11(3)               --------->AHL20(2)        <---------TOE2(3) ------>ARR14(2)               <---------AHL20(2) <---------YAB1                 --------->HSFB2a(2) -------ARR14(2)            --------->YAB1 <---------AHL20(2)                    <---------HSFB2a(2) ------>ARR11(3)        <--------HAHB4     --------->AHL20(2)  <---------YAB1--------->AHL20(2) -------AGP1           <---------ATHB12<---------ZAT6    <---------TOE1(3)   <---------AHL20(2) ---------ARR10<---------ZAT6 <---------------AGL15     ---------->DOF2    ------->TEIL         -----   gatctaaactctgattagtgtttccatcatttataaatttagtattaaaattattttttaaagttaaaattgaaacgaattttttagaaaaacttgaatt  51200                                                                       --------->YAB1                                                                      <---------YAB1                              --------->YAB1                        --------->TOE2(3)                          <------ZmHOX2a(1)                 ---------->DOF2     <------ZmHOX2a(1)                  <---------ARR14(2)                     --------->TOE2(3)---------->DOF2  ----------->GT1 --------->GLK1(2)          <---------AHL20(2)     --------->YAB1             <----- ---->AHL20(2)    --------->ARR14(2)         --------->AHL20(2)     --------->TOE1(3)----------->GT1   aaaaatgaaaaatgttttcaaatctgtaggaatgaaaacaaaaccatttaaaaaaaaaaacttaaagaaaccataataaagaggagatggaaatttgact  51300                                           <---------MYB52(1)                                          --------->At5g28300                                          <-------GAMYB                                         ----------->GT1                                 -------->ATHB1                                 --------->ATHB51                                       ------>ZmHOX2a(2)                                <---------YAB1                                        <---------ARR14(2)                                --------->ICU4                                 --------->ATHB12                               <----------DOF2                      <---------ZAT18   --------->ARR14(2)    ------->TEIL             --------->ZAT18            <---------DAG2       <---------WOX13(1) ----ANAC46     <------ZmHOX2a(1)--------->ATHB12       <----------DOF2 <----------DOF2<------ZmHOX2a(2)   tggatgcacttagagagaggatgggcgagagggcattattggacagttaattcatgggctttatcaattgtgggctttgaatgatttggatccaaattct  51400                                                   --------->TOE2(3)                                                  --------->ANAC46                                  <                                ---------->ID1    --------->ANAC55(2)       <----------DOF2        <-                                <------NtERF2    <-------TEIL            <---------ARR11(3)    <-----                              <---------DEAR3(1)<-----------GT1          --------->ARR11(3)   <------  ------->TEIL          <-----------GT1 --------->HSFB2a(2)            --------->MYB59        -------  <-------TEIL         <---------ATHB12 <---------HSFB2a(2)    <----------DOF2        <-----------GT1   aatgtacgttataggcccaaaacaaatcaccctcggcgttttctagtaatatacgttataaggcccttttatttaggtcttttttgtttttcatttttta  51500      <---------ANAC58      <---------ANAC46      --------------->AGL15      <---------ANAC58                                                                --------->ATHB12 -----------GT1                   <---------RAP2.6(2)                      <------------CBF --------AHL20(1)                <---------At5g28300                   <-------TEIL   <---------MYB46(3) ------GT1                       --------->RAP2.6(3)                 <---------ARR14(2) ---AHL20(2)                    <-----------GT1      <-----------HVH21--------->CCA1(2)        <----- -->AHL20(2)                 --------->MYB111(1)  <---------TOE2(3)  --------->ARR14(2)   *TSS ------   atatacttccttgtatagacacttggactagtagttacggccttagaagattaagggtcaaatatggagaagatacaaattgtaggggtgattagcaaat  51600                                                                               <---------ANAC46                                                                             <---------ANAC46                                                                        <----------DOF2                                                                      <------NtERF2                                                                     --------->LBD16                                                                     ------>NtERF2                                                                    --------->RAP2.3(3)                                                                    --------->RAP2.3(2)                                                                    --------->ATERF1(2)                                                                    <---------DEAR3(1)                                                                    --------->DEAR3(1)                                                                    <---------ATERF1(2)                                                                    --------->DREB2C(2)                                                                   <---------LBD16                                                                   --------->ATERF1(1)                                                                   --------->ORA47(2)                                                                   --------->DEAR4(2)                                                                  <---------ATERF1(1)                                                                  --------->LBD16            --------            --------->At4g35610                                   ------>NtERF2--------->ALFIN1------            <---------At4g35610                                  --------->DEAR3(1)         <--------     <---------RVE1(1)               ---------->DOF2             --------->ANAC46          <---------MYB52(1)    <---------ARR11(3)            --------->YAB1               ------>ZmHOX2a(1)         ------>ZmHOX2a(2) ----ARR14(2)                    =====================================HOX2a_HOX2a    ----------->HVH21 --->ARR14(2) <----------DOF2    <------ZmHOX2a(2)             =================================HOX2a_HOX2a   attcgtgatattttagctgtatggttttggttccgatcacaaagagcatcgaatcgagctacttcctccgccggctttgctgtgtgtgtgatcgttcgtt  51700                                                                                <------NtERF2                                                                               <-----------HVH21                                                                               ------>NtERF2                                                                             --------->RAP2.3(1)                                                                            ------>NtERF2                               --------->LBD16                             --------->ANAC58                              <---------ANAC46                             --------->ANAC46        --                              --------->ETT(1)                             --------->ANAC58   -------                             <---------LBD16                  <---------ANAC58--------->DEAR3(1)  ---                      --------->ANAC58                        <---------ANAC58<---------ANAC46<------                      --------->ANAC58                        --------->ANAC55(2)             -------                    --------->MYB52(1)         --------->ANAC58 <---------MYB52(1)      <---------MYB46(3)                  <---------MYB52(2)      --------->ZAT2   <---------ARR14(2)<------NtERF2 <-------TEIL ->MYB52(2)     <-----------ARR10         <---------ZAT2   --------->ARR14(2)--------->ATERF1(1) ---- --->DOF5.7(2)  --------->GLK1(2)         <---------At4g35610 <---------ANAC55(2)      --------->ALFIN1 -TOE1(2)    <---------ANAC55(2)<------NtERF2  --------->ANAC58<-------GAMYB<---------ATERF1(1)  <---   tactaaatctgaaacaagtatctaacgccttgccggagatgtcgagctcaggccaaactcagttccgttatacacagacgccgtcgaaggtggttcatct  51800                                                                                                  ---                                                                                                  ---                                                                                              -------                                                                                         <------NtERF2                                                                                        ------>NtERF2                                                                                       --------->DEAR3(1)                                                                                      --------->ATERF1(1)                                                                                      <------NtERF2                                                                                      --------->RAP2.3(1)                                                                                     <---------RRTF1(1)                                                                                     <---------RAP2.3(1)                                                                                     <---------ATERF1(1)   <---------HSFC1(2)                                                                <---------ERF1   <---------HSFB2a(1)                                                               <---------DEAR3(2)   --------->HSFC1(2)                                                                <---------ORA47(2)   --------->HSFB2a(1)                                          --------->TOE2(3)   <---------RRTF1(3)  --------->ARR14(2)                                           ------>ZmHOX2a(2)    <---------DREB2C(2)  --------->GLK1(2)                                            ----------->GT1      <---------DEAR4(1)  <---------ARR14(2)                                          <------ZmHOX2a(2)     <---------RAP2.3(2) <---------ARR14(2)                                          <---------ARR14(2)     <---------RAP2.3(3) <---------GLK1(2)            --------->At4g35610            --------->ARR14(2)     <---------RRTF1(2) ------->LBD16                <---------At4g35610            --------->ARR11(3)     --------->ETT(1) -->At4g35610                <-----------ARR10               <---------ARR14(3)     <---------DEAR3(1) ------>ANAC46              <------ZmHOX2a(1)                <---------ARR11(3)     <---------At1g77200 ---At4g35610             --------->ALFIN1                   --------->ARR14(3)    --------->DDF1---- ---->RAV1(2)     <---------ANAC58                 <---------ARR14(2)              --------->RAP2.6(3) ----->At4g35610  <---------ANAC46                 --------->ARR11(1)             <-----------HVH21<- ------LBD16      <---------ANAC58       <----------DOF2   ----------->ARR10     <-----------RAV1(1)   gcggaatcttccatgggaatgcgtcgaagaggagctcatcgacctttgcaaacgattcggcaagatcgtcaataccaagagcaatgtcggcgccaatcgc  51900                                                                               <------MYB83                                                                               <------MYB46(1)                                                                           --------->ARR14(2)                                                                        <---------TOE1(2)                                                                        --------->LBD16     <----------DOF2                                                   --------->LBD16 ------>ANAC58              <---------WOX13(1)                        <---------LBD16      <------ZmHOX2a(1) ------>ANAC58        <---------At4g35610                         <---------At4g35610  ---------->DOF2 -->YAB1<---------ANAC46<----------DOF2                  <---------ALFIN1  <---------ARR14(2) ------- ----->WOX13(1)       --------->At4g35610               --------->LBD16<---------LBD16<------ZmHOX2a(1) --------ATHB12     <---------ZAT18            <-----------GT1    --------->ZAT2    <---------TOE2(3)   aatcaagctttcgtcgaatttgtgagcttaattgaaattgtttttgttcttacagtcccccaatttctagctcccgggatttggtttaggaaaggataaa  52000                                                                                                 ----                                                                                                 ----                       --------->TOE2(3)                                                        <----                      --------->YAB1                                                           <-----                     <---------ATHB12                                                         <------                ------>NtERF2                   --------->HSFC1(1)                           <-------               --------->DEAR3(1)               <---------HSFB2a(2)                        --------->YAB1              --------->At4g35610               --------->HSFB2a(2)                       --------->ICU4 --->DOF2     <---------At4g35610          <----------DOF2                                <---------YAB1   gagaaattggaattgcagcgccaaacatcaaaccctagaatcgagcttttctcgaattgtagtatcgaataggtttctcaagttttatagctatgatggt  52100  Previous    Next  AGI:  At3g01150.1    Description:  PTB (POLYPYRIMIDINE TRACT-BINDING); RNA binding. Identical to Polypyrimidine tract-binding protein homolog 1 (PTB) [Arabidopsis Thaliana] (GB:Q9MAC5;GB:O82472); similar to polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative [Arabidopsis thaliana] (TAIR:AT5G53180.1); similar to unknown [Populus trichocarpa] (GB:ABK95931.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 51590    to: 54513    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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