Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->ALFIN1       --------->LBD16      <---------ANAC55(1)      --------->ANAC55(2)                                                                       -----      <---------ANAC58         <------ZmHOX2a(1)                   --------->ARR11(3)           <----      <---------ANAC58  --------->LBD16                            <---------ARR11(3)    <---------ANAC46      <---------ANAC55(2)<------NtERF2                             <---------ARR14(2)  <---------ZAT18      <---------ANAC46 --------->RAP2.6(2)                     <---------At4g35610     --------->ZAT18   --------->ARR14(2) <---------LBD16                       --------->LBD16            --------->ZAT14   --------->GLK1(2)------->GAMYB                         <---------LBD16           <---------ANAC46   <---------ARR14(2)--------->MYB52(1)                <---------At4g35610       --------->HSFB2a(2) ---->ZmHOX2a(2)    --------->DEAR3(1)            <---------ARR14(2)         <---------GLK1(1)<------ ------ARR14(2)    --------->MYB46(3)             <---------GLK1(2)--------->ARR14(2)  <---------ZAT14 ----->ARR14(2)    --------->DEAR3(2)             --------->ARR14(2)  <-----------GT1 --------->ALFIN1   atccgattccgtggtgagaaaaccgccggaacaggattaggcttccatttcggattcttctgcgcagaagatttactcgatttctcgagtggagtcgagt  3900                                                                                       <---------ANAC58                                                                                  <---------GLK1(2)                       <---------HSFB2a(2)                              <-------TEIL   <---------ANAC58                       <---------LBD16                                  ------>ZmHOX2a(2)                       --------->HSFB2a(2)                             <------ZmHOX2a(2)                   <---------GLK1(1)                                  --------->ARR14(2) ---->ALFIN1<---------ZAT6      ----------->GT1                       <---------ARR14(2) -----ZAT6 <---------TOE2(3)  <---------ARR14(2)       <---------WOX13(1)--------->WOX13(1) ---ANAC46 <---------TOE1(3)  --------->GLK1(2)  <---------ANAC46  ------>ZmHOX2a(2)   <---------ANAC46   gtgagacgaagttagggttagaattctcggagaatcgtgaaacctcttgagccttggattgaaaactgatcggatccatcaccagagtctcgtgtttagc  4000                                   ----------->GT1              <----------DOF2          >>>>>>>>>TBF1                                 <---------At4g35610          ---------->ID1          >>>>>>>>>TBF1             <---------ATERF1(1) --------->At4g35610  <---------TOE2(3)               ---------------        <-------TEIL   ---------->DOF2                <---------TOE1(3)      <---------ZAT14   attcttcaaattcgtcgactccatcgaaagatgagagcagaaaaatgtgagaaattagggttttgtcttttcgagtgagtgaagggaagaagaagaagag  4100                                                                                                <----                                                                                               ------                                                            <-----------GT1                  <-------                                          --------->At4g35610                             --------->YAB1                               <---------ANAC46             --------->MYB52(1)            --------->ANAC55(2)                            <---------RAP2.6(2)    <----------DOF2                    <---------GLK1(1)       <------ZmHOX2a(1) <---------MYB52(1)--------->ARR11(3)     *TSS               <---------ARR14(2)     --------->ALFIN1   <-------GAMYB     <---------At4g35610--------->RAP2.6(3)     --------->ARR14(2) --------->ANAC81  ----------->HVH21   <------ZmHOX2a(1)   ----------->HVH21         <---------GLK1(2)   agagggagaggagggaattgtctgaccgttgcgacttgtgaggaagctctcgactttgtatgtaacggctcgctcagtcatttactggattttcgtaatt  4200                                                                                                    <        <---------WOX13(1)                                                                         --      --------->ATHB12                                                                             --     --------->AHL20(2)  --------->AHL20(1)                                     ----------->GT1   <--     <---------AHL20(2)  --------->AHL20(2)                                   <------------CBF    <-- <---------YAB1          <---------AHL20(2)                                ------------>CBF       --- -----ICU4 <---------ANAC58                                    <---------At4g35610          ------>ZmHOX2a(2) --->ICU4  <---------ANAC58                         <---------YAB1        --------->ANAC58 <---------At4g35610 --ICU4<------------CBF --------->AHL20(2)         <---------AHL20(1)     --------->ANAC58 --------->At4g35610   actacgattaattgcttaatttcaaaaaaaattagtttaatgctggaatctaatatgtttgtttgggctggcccaaacccaattgttaaactgatctgaa  4300                                 <------------CBF                            ------->TEIL    <---------YAB1     <---------ANAC58 <---------WOX13(1)    <---------ANAC46 ------------CBF       <---------ANAC58                                                            == ------->ATHB12       <-------TEIL                                                                 == ------>HAHB4        <---------ARR14(2)                                 <---------GLK1(2)        ---- -------YAB1         --------->ARR14(2)                             ================================= -------ATHB12      <---------MYB52(1)                         ----------->RAV1(1)------>ZmHOX2a(1)-- ------>ICU4    --------->MYB52(1)               ------------>CBF   ---------->DOF2              ----   atgattgttatacaaaaaaaccggttcgtgaaccgcattgtctcatcgatgttcaatactgtttccaacaaaaagattgttgtcctcgagttcgccttca  4400      ========================================bZIP_DOF                                 --------->ANAC58      --------->ANAC58      <---------O2                                               --------->ANAC46      --------->TGA1a       --------->O2                                               --------->ANAC58      --------->ANAC58      <---------ANAC46                                           --------->ANAC55(1)      <---------TGA1a       <---------TGA1a      <----------ARF1                       <---------ANAC55(2)      <---------O2          ==================bZIP_DOF                                 --------->ANAC55(2)      --------->O2          --------->TGA1a      <----------ID1                       <---------LBD16    --------->CCA1(2)       <---------ANAC58    <------ZmHOX2a(1)                    --------->MYB52(1) ===============bZIP_DOF    <---------ANAC58    ====================================HOX2a_HOX2a ===============bZIP_DOF ----------->HVH21  <<<<<<<<<MYB98      --------->YAB1     <-----------HVH21 ----->ANAC58      --------->ANAC46       <---------MYB46(3)  <---------ARR14(2)  --------->ANAC58 ===============bZIP_DOF --------->WRKY12 --------->MYB52(2)  --------->ARR14(2)  --------->ANAC58 -------->DOF2     --------->ANAC58  <---------TOE2(3)--------->ANAC58            --------->ANAC46 ----->ANAC58      --------->ANAC58---------->DOF2    --------->ANAC58       ------>ZmHOX2a(2)   agaaagacacgagagagactccagccattgacgtctgcaaaggtttgttaggagacaaggcccgaatcagcatctatgatccacaagtcacggaagaaca  4500                                                      ------>MYB83                                                      --------->ANAC46                                                      ------>MYB46(1)                                                    --------->AtMYB61<---------ALFIN1                                            <-----------HVH21       --------->MYB46(3)                                           --------->ANAC46         <---------ATHB12        <--------                                           --------->bZIP60(2)     ------>MYB46(1)          <--------                                         <---------ALFIN1          -------->P            <---------MYB52(1)                                       ------>MYB83 <---------MYB111(2)  --------->At5g28300<--------                                       ------>MYB46(1)-------->P   ------>MYB83         <---------At4g35610  ---------->DOF2                 <---------PCF5    <---------ALFIN1<---------MYB55(2)<-----------RAV1(2)   aatccaaagagacttaaccatgaacacattcgactgggaccatccacttcacctccaacccatgagtccaaccactgtgaaacaagtctcagttgcttgg  4600                                   <---------ANAC58                              --------->GLK1(2)                          --------->ANAC55(1)                          --------->ANAC58                        <---------ALFIN1                    --------->ANAC58                    --------->ANAC58               ---------->DOF2<---------ARR14(2)              --------->AtMYB61<---------At4g35610      --------->At4g35610 --------->ANAC46      <---------At4g35610 --------->ANAC58                                       <---------ARR14(2)     --------->ANAC46------>NtERF2 <---------ANAC58                              --------->ARR14(2)    <---------------------WRI1--------->ARR14(2)                                 <---------GLK1(2) -ANAC46    ------>NtERF2<---------LBD16                                     --------->At4g35610 -ANAC58 ------>NtERF2 --------->DEAR3(1)   ------->GAMYB                    <---------At4g35610 -ANAC58 <---------ATERF1(1) <---------GLK1(2)  --------->ALFIN1     <---------WRKY18(1)      -------   gacgcttacgctgccaccaaagacgcccacggaatctgcttgttaaccgagtgggacgagtataagacgcttgactatgagcggatttttgaaaacatgc  4700                                                         --------->CCA1(2)                                                        --------->ARR14(2)                                                        <---------ARR14(2)                                                    <------ZmHOX2a(1)                                                  <---------TOE2(3)      --------->ZAT6                                              <---------At4g35610       <-----------------AG   --------->TOE2(2)                          --------->At4g35610       <-----------------AGL1  --------->MYB46(3)                          --------->ZAT2----------->GT1                  >>>>>>>> -->AtLEC2               <---------ARR14(2)  --------->GLK1(2)         <-----------GT1   <---------MYB52(1)   agaaaccagcgtttgtcttcgatggcagaaatgtttttgatgcagagaagctgaggaagatagggtttattgtttactctattggtaagccgttggacca  4800  Previous    Next  AGI:  At3g01015.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15061.1); contains InterPro domain Targeting for Xklp2 (InterPro:IPR009675) Range:  from: 1660    to: 4166    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g01010.1    Description:  UDP-glucose/GDP-mannose dehydrogenase family protein. similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G15490.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62897.1); contains InterPro domain UDP-glucose/GDP-mannose dehydrogenase, C-terminal; (InterPro:IPR014027); contains InterPro domain UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding; (InterPro:IPR014028) Range:  from: 4349    to: 4825    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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