Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       --------->WOX13(1)   <---------At4g35610   --------->At4g35610 --->MYB83 --->MYB46(1) --->DEAR3(2)                                <---------At4g35610 -->ZAP1                         --------------->AGL15 --WRKY18(1)                     <---------------AGL15                  <---------DAG2 >WRKY12                         <----------DOF2  ------>ZmHOX2a(1)     <----------DOF2 >WRKY38(1)        --------->GLK1(1)      ---------->DOF2      <---------MYB52(1) -->HVH21          <---------GLK1(1)  ---------->DOF2      ------>ZmHOX2a(1)             <------ZmHOX2a(1)   gactcagcaatccatgaaatgaaatcccaatttctcttttaaaagaaagctccttctcttcctcccttaagtctctttttgttcgatgggaggattaaga  19680000                  --------->LBD16                  ------>NtERF2                 <---------RAP2.6(2)              <---------ANAC58                <---------LBD16                   <---------ANAC58                          ---------            <----------DOF2                  --------->CCA1(2)              --------->HSFB2a(2)<-----            <---------DAG2                <---------YAB1                 <----------DOF2   --------->DAG2         --------->ARR11(3)             --------->YAB1         --------->MYB46(3)         ---------->DOF2         <---------ARR11(3)         --------->AHL20(2)      --------->MYB46(3)     ----------->GT1   agacttgttaagagcttttccggctagtttttggataatcaaatatgatatggcttcattcaacaacaactctccctttgggaactcgtataaaaagtta  19680100                                                                                                  ---                                                                                                  <--                                                                                            ---------                                              ----------->RAV1(2)                          --------->REM1(1)                                              --------->At4g35610                        ----------->RAV1(1)                                              <---------At4g35610   <---------ANAC46  --------->ANAC46                                              =============================RAV        --------->ANAC58                                             ------->TEIL      <-----------RAV1(1)    --------->ANAC58                                        --------->At4g35610 --------->GLK1(2)     <---------GLK1(1) <            --------->ARR14(2)          <---------At4g35610<---------GLK1(2)     --------->ARR14(2) - -->GT1     --------->GLK1(2)     --------->DAG2    <---------ARR11(3)           <---------ARR14(2)-- ------GT1  <---------ARR14(2)   ---------->DOF2    --------->ARR11(3)        <---------ANAC46   <---   ctacttaagcttcaaatctgtgtaactaaaatggataaagtctgatgcatctgaggtcttggaatctgttgctcatagttgtggataccagcaacatcaa  19680200      <---------ANAC55(2)      --------->ANAC55(2)      <---------ANAC55(1)      <---------ANAC58      <---------ANAC58      <---------ANAC46    <-----------GT1          --------->ZAT2   <---------YAB1            --------->At4g35610 <---------ICU4       ------>MYB83                                                                 <- ------>YAB1          ------>MYB46(1)                                                              <- -------ICU4         <---------ALFIN1                                                              -- >TOE2(3)   <-----------GT1  <---------At4g35610                             <---------MYB59      --- ---------YAB1   ------>MYB46(1)                                            --------->ANAC46     <--- -------->ICU4 <---------MYB59                                  ---------->DOF2                <----- ------->TOE2(3) ------>MYB83<---------ZAT2               ----------->GT1<---------ETT(2)  --------->ZAT14 ------ATHB12  <---------MYB46(2)                      <---------O2      --------->ETT(2)  <---------ZAT14   acattattacttgtttaccaaacccactctcagcttccatttcatcagtttgaagtcaagtggataaaaagactgtctacataactcaaatactgtagta  19680300                                               ------------>CBF                                              --------->ANAC58                                              --------->ANAC58                                             --------->DAG2                                  <---------HSFB2a(2)          <---------AHL20(2)      =================================================================== --------AHL20(2)                 --------->HSFC1(1) --------AHL20(1)                 --------------->AGL15                           <------ZmHOX2a(1) ------->AHL20(1)                 --------->HSFB2a(2)                           <---------TOE2(3) ------>YAB1           <-----------GT1      ---------->DOF2             ---------->DOF2 ------YAB1         <------------CBF   ---------->DOF2         *TSS --------->ANAC58 ----ZAT6 --------->AHL20(2)    ------>ZmHOX2a(1)  <---------ATHB12 --------->ANAC58   ttatattcacatataaatgagaaattgacatttcctctagaaaaagaaaagcaatcgtgtgagaagaaacaagtaaaaggctgaggaagaagacgactat  19680400                                                                                      --------->ATHB12                                                                               --------->O2                                                                               <---------bZIP60(1)                                                                               <---------ANAC55(2)                                                                               --------->bZIP60(1)                                                                               --------->ANAC55(2)                                                                               <---------TGA1a                                                                               <---------bZIP60(2)                                                                               <---------ANAC58                                                                               <---------ANAC58                                                                               <---------O2<------MYB83                                                                            --------->ARR14(2)                                 --------->MYB46(3)       ------->GAMYB     <---------ARR14(2)                               ----------->RAV1(1)      ------>MYB46(1)     <---------MYB52(1)     <-                              <-----------------AGL3    =================================MYC_MYB   <-                          <---------ETT(2)              ------>MYB83       <-----------HVH21<--------                         --------->SPL7           <---------GLK1(1)    --------->GLK1(2)   <------MYB46(1)                        <---------MYB52(1)        --------->GLK1(1)    ------------>MYB.PH3(1)<------     --------->LBD16    <-----------HVH21       <------NtERF2          ==================MYC_MYB<----     <-----------HVH21--------->LBD16       <-----------HVH21          <---------ARR14(2) --------->MYB59    --------->ANAC46 <---------LBD16      --------->ATERF1(1)    <---------LBD16   <---------At4g35610   <------NtERF2    <---------LBD16       <------NtERF2 -------->P --------->LBD16<---------DEAR3(1) ===============================================MADS_MADS ===============================MYC_MYB-----   tagtccccgtcgaacttgtttctcccggtcgtccaacaaatggctccgtcggagttccaaccgagtctctgggaatcggttacgtcgctgattaggtcag  19680500                     ===========================================bZIP_DOF                 ------>ZmHOX2a(2)                --------->ARR14(1)                                <---------HSFC1(2)                <------ZmHOX2a(2)                                 <---------HSFB2a(1)             ----------->ARR10                        <---------TGA1a            --------->ALFIN1                          <---------ANAC58           ------->MYC3                       <---------WRKY18(1) --------->HSFC1(2)           <-------MYC2                      ----------->HVH21    --------->HSFB2a(1)  ======================HOX2a_HOX2a          --------->WRKY12   <---------GLK1(2)  =====================HOX2a_HOX2a         <---------ANAC58  --------->HSFB2a(2)  <------ZmHOX2a(1)  <----------DOF2 --------->At4g35610   --------->At4g35610 --------LBD16 --------->TCP20       <---------ZAT2   --------->TGA1a ----------RAV1(2) --------->At4g35610<---------GLK1(2)    --------->ZAT2           --------->SPL7 ---HVH21  <-------MYC3 --------------------->WRI1    <---------ANAC46              ------->TEIL    - ---WRKY12 ------->MYC2--------->ATHB12    <---------ANAC58<---------At4g35610    --------->LBD16   - -----At4g35610--------->ARR14(2)    <---------At4g35610   <---------ZAT2       <---------LBD16     - ---->At4g35610<---------ARR14(2)    --------->ZAT2   <---------ANAC58    <-----------------AGL1   --   cccaggagaagaacgtggatccgcttcattgggctcttcagcttcgcttgaccctcgcgtctgctggaatctcccttccctctccggacctcgctcaatt  19680600                                                              <---------CCA1(2)          <---------ARR11(3)                            --------->DAG2         <---------CCA1(2)                        --------->HSFC1(1)         <---------ALFIN1                         --------->HSFB2a(2)       <---------ALFIN1                      <---------HSFC1(2)--------->ARR14(2)      --------->MYB46(3)                     <---------At4g35610 <-----------TGA1--------->LBD16             <---------HSFB2a(1)   --------->LBD16 <-----------HVH21                           --------->HSFC1(2)<---------ARR14(2) -------->ANAC46<---------HSFB2a(2)   <---------AtLEC2 ---------->DOF2          <---------ALFIN1 -------->bZIP60(2)      <-----------GT1     --------->HSFB2a(1)  --------->ANAC46              ----- -------->O2   <---------LBD16   ------>ZmHOX2a(1)<---------HSFC1(1)   --------->ICU4          ------ ---->ZmHOX2a(1)--------->HSFB2a(2)<----------DOF2<---------HSFB2a(2)  <---------YAB1 <---------ALFIN1   cctcgtcacccacatcttctgggaaaatcactctcctctttcatggaagcttctcgaaaaagctatatccgtcaatattgtccctcccctacttgtcctc  19680700                                        <---------WOX13(1)                                     ------                           <---------SPL7                           <---------YAB1             <-----                         <---------------AtSPL3               <---------ICU4                --------- ---->ANAC46      --------->ICU4      <---------ICU4         <---------YAB1               --------->ANAC46 >ZmHOX2a(1) ----------->GT1 --------->SPL7                --------->YAB1           --------->KAN4(2)   gcccttctctccccaaggtaacaatgagtcgtccgtctactaattgctcttctaatggttctcatcatttatgctacttgttgaaatattcccctcaagc  19680800                                                                                                   --                                <----------DOF2                                                    <-                       <------MYB83                                                <---------AHL20(2)                      <---------MYB46(3)                                   <---------ZAT14         <-                    <---------MYB52(1)     <----------DOF2                 --------->ZAT14        ---                   <---------SPL7    <----------DOF2                   --------->ZAT6             --- --->ZAT2   --------->ATHB12 <-----------GT1                         <---------ARR11(3)      <------- ----At4g35610     <-------GAMYB<---------DAG2    <-----------GT1    --------->ARR11(3)      <------- ->DOF2    <-------TEIL<------MYB46(1)   ---------->ID1   <-------TEIL<------ZmHOX2a(2)  <----------DOF2   tgtctgtaataggctcattgccgttgggttatcacttttctttttctttttatcaccaggctcatgtacaagatcactacagtttttaattctttatggt  19680900  Previous    Next  AGI:  At2g48100.1    Description:  exonuclease family protein. similar to exonuclease family protein [Arabidopsis thaliana] (TAIR:AT5G40310.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71456.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Exonuclease; (InterPro:IPR006055); contains InterPro domain Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520) Range:  from: 19677571    to: 19680362    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g48110.1    Description:  REF4. similar to RFR1 (REF4-RELATED 1) [Arabidopsis thaliana] (TAIR:AT3G23590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22492.1); similar to hypothetical protein OsI_024434 [Oryza sativa (indica cultivar-group)] (GB:EAZ03202.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71086.1) Range:  from: 19680363    to: 19686781    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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