Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------MYB52(1)       --------->YAB1   --------->ARR14(2)   <---------ARR14(2) ---------HSFB2a(2) -------------->AGL15                          --------->MYB46(3) -------->HSFB2a(2)                          --------->ANAC58                                    ---- ---------------AGL15              <-----------HVH21                                          ------- ----------------AGL3           --------->At4g35610                                        --------->ANAC58 ----------------AG        --------->YAB1--------->ANAC46                                  --------->ANAC58 ----------------AGL2   <---------ARR14(2)   --------->ANAC58                            ---------->DOF2 ----------------AGL1   --------->ARR14(2)   -------->P      <---------ANAC46       --------->At4g35610 --------------->AGL1<---------ANAC58    --------->ANAC58    <---------ANAC58       ================= --------------->AGL3<---------ANAC46    --------->ANAC58    <---------ANAC58       ================= --------------->AGL2<---------ANAC58--------->YAB1        --------->ZAT18        <---------ALFIN1  - ----->P     <---------ZAT18    <---------At4g35610    <XXXXXXXXXXXXXXXXXXXXMIR164C ----------->RAV1(2)   taccagaaatggtaatgcccttagcgtattcatcagcagtcataggcaacccatcgcatagtgccttgtttcttctccagtcgaacacctgcaaagcaac  19647500           <---------ANAC46           <---------ANAC55(2)          --------->RAP2.6(3)        ----------->TGA1        ----------->HVH21                                                                          <-      --------->YAB1                                                                              ---      <---------ICU4                <-------GAMYB                                                 --- ------->RAV1(1)                   <---------MYB46(3)                                             --- ---->RAV1(1)          <----------DOF2----------->GT1                                --------->MYB52(1) =====RAV--------->MYB52(1)       <---------TOE2(3)                        --------->ZAT2         --- ========RAV----------->GT1  <----------DOF2                     ------->TEIL  <----------ID1    <--- -------->TOE2(3)---------->DOF2<-----------RAV1(1)      ---------->DOF2   <---------ZAT2        ----   aacatcaaacatgacggaaaaaaggctttttcttttgtggttgtgaaattcgaagacaaaaaagatgtatgtataccagttgggacaaaacgggccatgg  19647600                            --------->ZAT2                            --------->At4g35610                                   --------->ANAC46                            <---------At4g35610                                   --------->ANAC58                            <---------ZAT2                                        --------->ANAC58                           ------->TEIL                                           <---------ANAC55(2)    ------->GAMYB       --------->ANAC46                                     <---------ICU4 --------->ARR14(2)     --------->ANAC58                                     <--------HAHB4 <---------ARR14(2)   --------->MYB52(1)                                     --------->YAB1 --------->MYB52(1)  ------->GAMYB                                           -------->ATHB1 --------MYB59      <---------MYB52(2)                                <---------LBD16   --------->ANAC58 ------>ANAC46      --------->MYB46(3)                            <---------DAG2  --------->ANAC55(2) ------>ANAC58--------->At4g35610                            <------NtERF2   --------->ATHB12 ------>ANAC58<---------At4g35610 <---------TOE1(2)         --------->ANAC58--------->ICU4 ---------- ------>ANAC55(2)   <---------MYB55(2)         ------>ZmHOX2a(1)  <----------DOF2<---------LBD16 ------------------WRI1 --------->ANAC58   ---------->ID1   --------->ANAC58<---------ATHB12 -------- --->TEIL   <------ZmHOX2a(1)   <---------ANAC46      --------->MYB52(1)--------->LBD16 --------->ANAC58   acgtaactgcctaaggagctcaacaaacgcagctccttggattttgttcctctccaaaacggaggcaactttaccggaatcattacggaagcgcaacaat  19647700                                     <------MYB46(1)                                     <------MYB83                                    <---------MYB46(3)                                    <---------AtMYB61                                  --------->ARR14(2)                                --------->LBD16                               --------->LBD16                              --------->LBD16                         --------->DEAR3(1)                      <---------ICU4--------->ALFIN1                     <---------YAB1<---------WOX13(1)                --------->YAB1<---------LBD16                                           <---------TOE1(3)            --------->LBD16   <------NtERF2                    --------->DAG2           <---------TOE2(3)   <-----------GT1 --------->YAB1 <---------ARR14(2)          ---------->DOF2        <---------REM1(2) ->RAV1(1)<---------HSFB2a(2)------>NtERF2                 ----------->GT1      <---------GLK1(2) ->MYB46(3)--------->LBD16  --------->DEAR3(1)     <---------LBD16         <-----------HVH21   tggtttttcaatcccgaagcatcatcatcgcccccggattggtggaagggagacctggagagggtaaagcagaatggggtcagagtcttcaaggttgaag  19647800                                     --------->GLK1(1)                               <---------LBD16                             <---------ARR14(2)                             --------->ARR14(2)                             --------->ARR11(3)                            <---------GLK1(1)                            <---------RVE1(1)                            --------->GLK1(1)                            --------->RVE1(1)                       <------ZmHOX2a(2)                <------NtERF2<---------ARR11(3)         <-------MYC2           --------->DAG2  <---------ARR11(3)           <-------MYC3         ---------->DOF2   --------->ARR11(3)           ------->MYC3      --------->LBD16 --------->ARR14(2)             <---------ALFIN1                       <--------     --------->O2     <---------ARR14(2)       <---------GLK1(2)                       <------------CBF     <---------O2 <---------At4g35610<---------GLK1(1)  ------->MYC2              <------ZmHOX2a(1)     <XXXXXXXXXXXXXXXXXXXXMIR408 --------->LBD16--------->GLK1(2)  <---------AtLEC2 ------------>CBF    <---------LBD16  --------->At4g35610     ----------->ARR10   *TSS          <------ZmHOX2a(1)   aagagccacgggaaaggcagagcagatcagatatctgggaaatcagtgagattctccacatgcgcttcttcatggagactaggaggagcaattgagatgc  19647900                                                                                               <-----                     --------->ARR11(1)                                                        <-----                   <---------YAB1                                                              <-----          <<<<<<<<<WRKY18 ------>NtERF2                                                    <---------          <---------WRKY12---------->ID1              <-----------TGA1                 <---------YAB1         --------->WRKY18(1)  <----------DOF2    <----------DOF2                     <---------AHL20(2)     ---------->DOF2--------->ATHB12            <---------DAG2                       --------->AHL20(2) -At4g35610        --------->ICU4               <----------DOF2  ------>NtERF2      --------->AHL20(2)   tctctctcaaagtcaagggtgatgattcggccctttcggttctatttgggccttttcgtcatttctcggcccatttgaaatgtccatttatttttgttgg  19648000                                                                                   <-------MYC2                                                                                   ------->MYC3                                                                                   <-------MYC3                                                                                  <---------ANAC58                                                                                  --------->TGA1a                                                                                  <---------TGA1a                                                                                  --------->ANAC55(2)                                                                                  --------->O2                                                                                  <---------O2                                                                                  <---------ANAC58                                                                              <-----------HVH21                                                                           ------>NtERF2                                                                           <------NtERF2                                                                          ------>NtERF2                                                                          --------->RAP2.6(2)                                                                         --------->ATERF1(2)                                                                         <---------ATERF1(2)                                                                         <---------DEAR3(1)                                                                         --------->DEAR3(1)                                                                        --------->ATERF1(1)                                                                       <---------RAP2.3(1)                                                                 <----------TaMYB80------->MYC2                                                                 --------->HSFB2a(1)                                                                <---------TOE1(2) <---------ANAC55(2)                                                      <----------DOF2  <---------ATERF1(1)                                                      ======================================bZIP_DOF                                                   --------->GLK1(2)   ------>NtERF2                                                  --------->ARR14(2)   --------->LBD16 -MYB83--------->MYB52(1)                         <---------ARR14(2)  <---------RAP2.6(2)        ---- -MYB46(1)                                        <---------GLK1(2)  <---------LBD16--------->ALFIN1 ----MYB46(3)                           --------->ANAC55(1)     <---------TOE2(2) <---------ANAC46 --RAV1(1)            <---------GLK1(2) --------->ANAC46   --------------------->WRI1--------->REM1(2)   tttgaagtcaaacggtggaatatagaatttcttagaatacacacttaacacagattcttttcttcgcatgttccggcggccatcacgtgtagattagtaa  19648100                                                                           --------->ANAC55(2)                                                                           --------->ANAC46                                                                           --------->ANAC58                --------->YAB1           --------->ATHB12                  <---------ANAC55(2)      <---------ZAT2                    --------->AHL20(2)                 --------->ANAC58      <---------At4g35610       <-------MYC3                          <---------AHL20(2)            <      --------->ZAT2 --------->ZAT6     --------->ICU4               --------->AHL20(2)       <------MYB83      --------->At4g35610       ------->MYC3                         <---------AHL20(2)       <------MYB46(1)     ----------->RAV1(1)       --------->O2                      <---------YAB1              --------   <---------At4g35610         <---------O2                    ----------->GT1               --------   --------->At4g35610         --------->TGA1a               <---------ANAC58                -------- ----->ICU4    <---------YAB1  <---------TGA1a               <---------ANAC58 --------->MYB52(1)    -   ttgtgagcagcagagctatgataagactaagacacgtttggatttattagataatgcaattaggcttgttattaaatacgaaacagaaacatgagtaggt  19648200                 <---------ATHB12               --------->WOX13(1)      --------->At4g35610             ------>ZmHOX2a(2)       --------->YAB1           <---------ARR11(3)       <---------YAB1           <---------ARR14(2)      <-----------GT1              <---------WOX13(1) ---------ARR11(3)         --------->AHL20(2)                 --------->ATHB12 ->MYB46(2)--------->ARR14(2)     --------->YAB1             <---------YAB1                        -- ->MYB111(1)<------ZmHOX2a(2)  <---------ICU4            <---------YAB1                       ------- ->MYB59  <------ZmHOX2a(1)<---------AHL20(2)          --------->ZAT6                    --------->DAG2 -------->ARR11(3)--------->YAB1 <---------YAB1   <---------GLK1(2)       <---------YAB1---------->DOF2   aagacctcttcaggatccaatcaagaattttaaatattatcatctctcaccagattaccactattgattgaatagtatgaaaatgaaacaaaaagtgaaa  19648300                                                                                      ------------>CBF       <---------ANAC46                                            --------->WOX13(1) <---------ATHB12       <---------ANAC58                                          --------->AHL20(2)  --------->ANAC58       <---------ANAC58                                        --------->ANAC58      --------->ANAC58   --------->ARR11(3)                                  ----------------->AGL1     ------------>CBF <---------HSFB2a(1)                      ----------->HVH21    --------->ANAC58  --------->ZAT6 --------->HSFB2a(1)                   <-------TEIL   <---------At5g28300 --------->AHL20(2)     ---- <---------HSFC1(2)                 <------MYB46(1)  <---------WRKY18(1)--------->ANAC58   <--------ATHB1 --------->HSFC1(2)                 <------MYB83     <-----------GT1    ----------->GT1   <---------ATHB51 -------->DOF2                     <---------TOE2(3)----------->HVH21   --------->ANAC58  <---------ATHB12 --->DOF2        <---------ANAC46  --------->MYB59  --------->WRKY38(1) <---------ANAC55(2)--------->YAB1   ggaaagttctcgtgcaacttcgtggatgagactcaattaggttcatgacatgttttgaccgtttcaagtaaatcaagtaaataacacaatcaataataca  19648400  Previous    Next  AGI:  At2g48000.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G30780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22445.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 19646077    to: 19647865    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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