Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           --------->At4g35610                                                                       <---------PCF2                                                                    --------->ALFIN1                                                                  --------->ALFIN1                                                                  <-----------RAV1(1)                                                                  <---------ANAC46                                                                 <------NtERF2                                                                 <----------CDC5                                                                --------->At4g35610                                                                <---------At4g35610          --------->LBD16                                    <---------ATERF1(1)        <---------LBD16                                      ------>NtERF2       ------>NtERF2                                        <---------DEAR3(1)      --------->DEAR3(1)                     ----------->HVH21--------->ATERF1(1)     --------->ATERF1(1)                <---------ARR14(2)  <---------RAP2.3(3)     <------NtERF2               <---------ZAT14            <---------PCF2    ------>NtERF2               ------>ZmHOX2a(1)  ------->TEIL<---------DEAR3(1)      --------->GLK1(1)    <---------RAP2.3(1)       ----------------->AGL1        --------->ALFIN1      --------->SPL7    <---------ATERF1(1)       <-----------------AGL1     --------->ALFIN1<---------At4g35610        <   --------->DEAR3(1)    <---------ANAC58  --------->ANAC55(2)<------NtERF2       <---------ZAT14   <   <---------DEAR3(1)    <---------ANAC58  <---------ANAC55(2)--------->ZAT18   <---------SPL7      < <-----------HVH21  --------->ALFIN1    --------->ARR14(2) --------->ATERF1(1)  <---------ZAT14    --   catcgtcgcctccggagaccaagtggagcttgtcctgaactggatacttgacgaatcgagcgggggcgctgtgggagcggagagtacggagagccattcg  19645300                           --------->LBD16                         <---------LBD16                        --------->MYB52(1)                      --------->ANAC58                       --------->ANAC46             --------->GLK1(1)              ----------->RAV1(2)                   --------->At4g35610             <---------ARR14(2)                    <---------ARR11(3)             --------->ARR11(3)                ---------->DOF2  --------->ANAC58             <---------ARR11(3)    ------>ZmHOX2a(2)<---------GLK1(1)                               < ---------ANAC46       <---------ALFIN1    ------>NtERF2 <-----------HVH21                       <--- ---------ANAC58     --------->AtMYB61     --------->LBD16    --------->MYB52(1)            --------- ---------ANAC58     <---------ALFIN1     <---------ANAC46  <---------DEAR3(2) <------ZmHOX2a(1)----- ------->MYB52(2) <---------PCF5  <------ZmHOX2a(2)--------->ARR11(3)   --------->MYB52(1)<---------LBD16   ttccttgatgtcgaagacctggaccacaccggagagatcgcatgccgcgaaaagagctccgtcggaacggaaacagacggaggagacaacatcgcggaag  19645400                                                           <---------ATERF1(1)                                                          ----------->HVH21                ---------->DOF2                     <---------ANAC46          --------->ALFIN1                         <------NtERF2        <------NtERF2                            <---------ANAC58                           ---------       ------>NtERF2                             <---------ANAC46                           ---------       <---------MYB46(3)                        <---------ANAC58                   --------->LBD16      <---------ANAC46                          <---------LBD16                   <---------LBD16     <-----------------------TaNAC69(2)         <------NtERF2<---------DEAR3(1) <---------WRKY18(1)     <---------LBD16                            --------->ATERF1(1)            --------->WRKY38(1) --------->MYB52(1)                           <---------DEAR3(1)               --------->ETT(2) ---------ARR14(2)                            --------->ALFIN1------>NtERF2   --------->ALFIN1 ---ZmHOX2a(1) <------ZmHOX2a(1)---------->DOF2------>NtERF2--------->ATERF1(1)--------->ZAT18 >LBD16--------->MYB55(2) <---------ANAC46 <---------DEAR3(1)--------->DEAR3(1)--------->WRKY12 ----- ------>GT1 <------ZmHOX2a(1) <------ZmHOX2a(1)<---------MYB46(3)       --------->ALFIN1  ---------->DOF2   gagaaacggcgggaggaggaaagcgactgcgaggaaaagagggagacggtggcggagtgagcgacggccaaggagtgagggtggaccggagagaaagcca  19645500                                 --------->ATHB12                          --------->ARR14(2)                         --------->ALFIN1                                  <---------ARR14(2)                       <---------ANAC46                                    <---------GLK1(2)                       <---------ANAC58                                <-----------------AGL1                       <------MYB46(1)                               --------->ATERF1(1)     <---------LBD16   <------MYB83<---------YAB1                   <---------ATERF1(1)   <---------ARR14(2)  <---------ANAC55(1)                         <---------GLK1(2)              ---   --------->ARR14(2)  <---------ANAC58                        <---------LBD16                  <---- >ANAC58              --------->MYB111(1)                    <---------ARR14(2)                <----- >ANAC58              --------->MYB59       <------ZmHOX2a(1)--------->ARR14(2)         --------->ARR14(2) ----->DOF2<------ZmHOX2a(1)    --------->ICU4 <------ZmHOX2a(1) --------->LBD16        <---------ARR14(2)   aagcggctacggaggagacgagattaggtgtggaatgatttttgaaggaggaccagtacctcgattccggagtctccgattcggaaacaggtttcgccgt  19645600                                                         --------->ARR11(3)                                                       ------->TEIL                                                    --------->ANAC58                            <----                                              --------->RAP2.6(2)                               <----                                            <---------At4g35610        <---------YAB1           <----                                       --------->WOX13(1)<---------ARR11(3)                    <-----       <----------DOF2       <---------ANAC55(2)    --------->ANAC58 <---------ICU4--------->ANAC46 ------>ATHB12          ----------->HVH21   --------->At4g35610 ------>ZmHOX2a(1)  --------->ANAC58 -----MYB52(1)       --------->TOE2(3) ----------------------->TaNAC69(2)          --------->ANAC58 --GAMYB----------->HVH21    --------->ANAC55(2)    --------->ANAC46<---------MYB52(1)         ------   tgatttgggcttcacagggaaaacctttgacacttgatggtcattcagccgaacacgaagctcttcctccattattctagagtacaagcagagagctagc  19645700               --------->MYB52(1)              ----------->HVH21           ------->TEIL        --------->ANAC58        --------->ANAC58   >>>>>>>>>TBF1                           <---------TOE1(3) -----ANAC58 <---------MYB52(2)            <---------TOE2(3)                    <---------ANAC55(2) -----ANAC58<---------At4g35610        <----------DOF2                          --------->ANAC58 -----ANAC46--------->ZAT2           <------MYB46(1)                  <---------ARR11(3) ----STY1(2)<---------ZAT2           <------MYB83  <---------At4g35610--------->ARR11(3) ------------ --->STY1(2)--------->At4g35610<------ZmHOX2a(1)*TSS          <---------ANAC46  --------->ANAC58   ttgaagaagaacgcagctaacagagagagagaaggaggctggtttagggtttaagcagagaatggcgaagaagacatttgataagtaagtatccaaatga  19645800                                -------->P                  --------->ANAC55(2)                                ------>MYB46(1)----------->RAV1(2)                                ------>MYB83   <---------At4g35610                              <---------MYB59  --------->At4g35610--------->TOE2(2)                 <                     <---------AHL20(2)<-----------RAV1(1)  <---------ANAC55(2)                   <--         <------NtERF2 <------------CBF====================RAV    --------->TOE2(3)        --------->MYB52(1) ----->AGL3        <---------YAB1------------>CBF        <---------MYB52(1)<---------AHL20(2)   -----   agtttttgggcctcgtttattatgttattgggcctaccaatttgttggcatctgaagcccttacttaaccttcgtatttaacttggacaaactaaacgaa  19645900                                                                 ----------->GT1                                                               ---------->DOF2                          <---------At4g35610             <---------------AGL15       <-------TEIL  - -----------GT1        <<<<<<<<<TBF1                      --------------->AGL15  ------>ZmHOX2a(1)--- -------AHL20(2)  <----------DOF2<---------AHL20(2)------>ZmHOX2a(1)        --------->GLK1(1)  ------ -->TEIL     <----------DOF2<---------YAB1        --------->TOE2(3)         <---------GLK1(1)  ------   tttatctcttctctcctttcctttcttcttctgatttttttagtttctcaatccttatttctctgaaaagaaaaaccgaattcctcgattcatccacaag  19646000                                           <---------WOX13(1)                                          >>>>>>>>>GATA-1                                          >>>>>>>>>GATA-2                                          >>>>>>>>>GATA-3                                          >>>>>>>>>GATA-4                                      ------->MYC3                                      <-------MYC2                                <------ZmHOX2a(1)                                      <-------MYC3                              <---------TOE2(3)       <-------TEIL                   ------->MYC2      --------->ANAC58    --------->ANAC58 ----------->GT1            <---------ANAC55(2)         --------->ANAC58    --------->ANAC58 -------->DAG2              --------->ANAC46 --------->ATHB12          --------->YAB1 ------->DOF2               --------->ANAC55(2)         --------->AtLEC2    <---------ANAC55(2)<----- --->ANAC58                 --------->ANAC55(1)<---------WOX13(1)     --------->ICU4           ------ --->ANAC58 --------->WOX13(1)      ------->TEIL --------->AHL20(2)  <---------KAN4(2)      <--------   gaaaggtgattcatcaatcttgtgcttaacacataatgcatgtggattgatttatatcaggcaaattggagaatgatcaagtaaggaagaagttttgtat  19646100                                                    --------->LBD16                                        <---------HSFB2a(2)                      ---------->DOF2                 --------->ANAC58       --------->HSFB2a(2)                     --------->YAB1       --------->MYB46(3)            --------->ARR14(2)                        <<<<<<<<<ARR2 ---------->DOF2 --------->ANAC58    <---------ARR14(2)                        <---------ATHB12 ----ZAT14       --------->ANAC46   <---------CCA1(2)  ---------->DOF2    <-----------GT1 --->ZAT14  <---------------AtSPL3 ------->TEIL---------->DOF2         ----------->GT1   <-------MYC3 -ANAC46----------->RAV1(1)--------->YAB1--------->LBD16        <---------MYB52(2)       ------->MYC3   actgaaagaaccacagagtacgaaactattcatcatgtatatccagaagtaatgcgcaaaagagcaacttacaatgttacaatcaaagacacatggatgc  19646200  Previous    Next  AGI:  At2g47990.1    Description:  SWA1 (SLOW WALKER1); nucleotide binding. similar to VIP3 (VERNALIZATION INDEPENDENCE 3), nucleotide binding [Arabidopsis thaliana] (TAIR:AT4G29830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22432.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 19643937    to: 19645748    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g48000.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G30780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22445.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 19646077    to: 19647865    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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