Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        --------->ZAT14                      --------->At4g35610                                          <------MYB83                      <---------At4g35610                                          <------MYB46(1)                      --------->ZAT2                                      <---------ANAC58          -                   --------->LBD16       ------>NtERF2                    <---------ANAC58          <                 <---------LBD16        <---------RAP2.3(3)             <---------ARR11(3)     <-----      --------------->AGL15             --------->LBD16                 --------->ARR11(3)   <-------      <---------------AGL15            <---------ANAC58             ---------->DOF2<---------MYB46(3)     ----------------->AGL1  --------->ANAC58                   --------->LBD16   <---------MYB46(3)<     ----------------->AGL2  --------->ANAC58             --------->HSFB2a(2)     <---------AtMYB61 - <---------ICU4 --------->MYB52(1)     <---------ANAC58   <---------HSFB2a(2)    <---------MYB52(1) < ----HVH21     <---------ARR14(2)      <---------ANAC46 ----------->RAV1(2)     <-------GAMYB--------   tcaacattcccaatagagaaccggagcagtcgagcaacgatgcgggctctaaaaacacatctggaccgggcaaagagcttgccgttggtgaagaagatgt  19637900                                                 <---------TGA1a                                                 --------->TGA1a                                                 --------->HSFB2a(1)                                             --------->TOE1(1)                                             --------->TOE2(1)                                            --------->At4g35610                                            <---------At4g35610                                     <---------ANAC58                                        <-------                                     ================================bZIP_DOF            <-----------HVH21                                     ======================bZIP_bZIP           --------->At4g35610       --------->At4g35610           --------->TGA1a                           <---------At4g35610       <---------At4g35610           <---------O2====================bZIP_DOF  <---------ZAT14 -------->ARR11(3)                   <---------ANAC58                          --------->ZAT14 ---------ARR14(2)                   <---------TGA1a                      <---------ANAC58   <------- ------HVH21                     <---------HSFB2a(2)                  <---------ANAC58<---------ANAC58 --ARR11(3)      <----------DOF2 --------->HSFB2a(2)                  --------->ALFIN1<------NtERF2 ---------GLK1(2)==========================================bZIP_DOF   <---------ANAC58----------->RAV1(2) -------->ARR14(2)            --------->GLK1(2) --------->SPL7      --------->ALFIN1  <---------ANAC58 ---------ARR11(3) <-----------RAV1(1)  <-----------HVH21     <---------At4g35610  --------->ATERF1(1) ->ARR11(3)      ==============================bZIP_DOF   <----------DOF2 <---------ANAC58   --------   cagattttcatctgcttctctttgtggctcagtttctggacgtgtcatcggacgtccctgctttagccgagtgtgtgcgtctgcagtcgcctgtcccaga  19638000     <---------ANAC58             ----------->GT1                                                 ---     <---------ANAC58         <---------ALFIN1                                              <-------- ----RAV1(2)                ----------->RAV1(1)                                     <-------TEIL ---- --HSFB2a(2)        --------->ATHB12                                         --------->ARR11(3)  <--- ->HSFB2a(2)       <---------ATHB12                                     ----------->GT1 <----------DOF2   gggctatgcgttgctcatcgaatcaatggccaacacttgttaatttttgtgtcattgttttttggttcttgatacagtatatcatgttcgttttatggtc  19638100           <-----------GT1      <----------DOF2                   <---------ZAT14   <---------ARR11(3)                   --------->ZAT14   --------->GLK1(2)                    --------->ZAT18   --------->ARR11(3)                   <---------ZAT18                 <-------GAMYB ------>LBD16                          <---------ZAT6                  ----------->GT1 -------AtSPL8                 <---------ARR11(3)       <---------AHL20(2)    <---------AHL20(2) ---- ----->HSFB2a(2)               --------->ARR11(3)    ------->TEIL   <---------LBD16              <--- ------HSFB2a(2)               --------->GLK1(2)  <---------ANAC46 --------->ALFIN1       --------->MYB46(3)   cagaaaatcttttttactagttgacaaatgaaaaatctctagtgtactcgtgatgtatttgattcaagtttgggggttaatttaagttatcaacaacttg  19638200                                                                                    <---------At4g35610                             <---------ICU4             <------------CBF--------->YAB1     <---------TOE2(3)      ----------->GT1       <---------ATHB12            <---------ARR14(2)   ---------->DOF2    ---------->DOF2      --------->AHL20(2)    ---------->CDC5  ------------------------>ANAC81   <-- ----->HSFB2a(2)         <---------AHL20(2)    <-----------RAV1(2)    --------->AHL20(2)  ---------->DOF2 ------HSFB2a(2)   ----------->GT1<---------YAB1        --------->ARR14(2)--------->AHL20(2)      <--   tagaaacaaagttaattcacagagtaataaatcattctaataggtatgctcaggggcaaattggcaaaacataaaaataaaaagagagctactaaagttt  19638300                                                  ----------->GT1                                                --------->At4g35610                         <---------YAB1       --------->DAG2                      <---------AHL20(2)     ---------->DOF2    ---------->DOF2  --------->AHL20(2) ----------->GT1    <---------ANAC46          <-----------HVH21 -------ANAC58 --------->YAB1           --------->TOE2(3) <---------LBD16            <-----------TGA1 -------ANAC58----------->GT1*TSS      ----------->GT1   --------->ALFIN1       <-------TEIL   tcgagcgaaagcgaaaatgaaaattttataattcgagcgaaatgttaaaaagctgaaaattgggggaagaagagagaagagtttcatcgtcactggaatc  19638400                       --------->MYB52(2)                     <--------P              <------NtERF2             --------->LBD16                        ----------->GT1            <---------ANAC46                ----------------->AGL1            <---------ANAC58          --------->ALFIN1    <----------DOF2           --------->MYB46(3)            <---------ANAC58   ---------->DOF2 <---------STY1(1)                --------->At4g35610           <---------LBD16 <---------HSFB2a(2) --------->STY1(1)                <---------At4g35610   aatagagtcaattggcgggagaggttagtctcgaaaagaagtggaagccctagggggaaactttctcgctcactcgctcgtctgcaaacaccatggaaga  19638500                                                                                    --------->REM1(2)                                                                                   --------->ALFIN1                                                                                 <---------ANAC46                                                                                 <---------ANAC58                                                                                 <---------ANAC58                                                                           --------->ZAT2                                                                           <---------ZAT2---------->DOF2                            <---------ANAC58                               --------->At4g35610          <---------ANAC58  <---------ANAC46                               <---------At4g35610      -          <---------ANAC58  <---------ANAC58                               ----------->RAV1(2)      <   ------>ZmHOX2a(1)    <----------DOF2 <---------YAB1                    <-----------RAV1(1)      --   cagtcctcaaggccttgtgagtctctctttgcttgtttgattttgtttgggaattttggattactcttaagtttttctgctgggcgtgtagaaaaggagt  19638600              <------ZmHOX2a(2)             --------->ARR14(2)             <---------ARR14(2)            <------ZmHOX2a(1)         <-----------RAV1(2)        =================HOX2a_HOX2a        <------ZmHOX2a(2)       --------->ARR14(2)       <---------ARR14(2)                                 <------NtERF2     --------->LBD16                                      <---------LBD16   <---------LBD16                                        --------->ATERF1(1)   ======================HOX2a_HOX2a                     <---------RAP2.3(1)   ------>ZmHOX2a(2)                                    <---------DEAR3(1)         --------->DEAR3(1)   ================HOX2a_HOX2a  --------->DEAR3(1)      <---------RAP2.3(2)        --------->MYB46(3)  --------->CCA1(2)          <---------DEAR3(1)        --------->At4g35610        --------->At4g35610  =======================HOX2a_HOX2a                   <---------At4g35610        <---------At4g35610  <------ZmHOX2a(2)         --------->At4g35610   --------->ANAC58             --------->ZAT2  --------->ARR14(1)        <---------At4g35610  <------NtERF2                 <---------At4g35610  =================HOX2a_HOX2a <------NtERF2    <---------ATERF1(1)     <------ZmHOX2a(1) --------->ARR11(3)    <---------bZIP60(1)      ------>NtERF2<------NtERF2     <---------ZAT2 <---------ARR14(2)    --------->bZIP60(1)      --------->MYB52(1)   =====================RAV --------->ARR14(2)    --------->TGA2(1)       --------->DEAR3(1)    <-----------RAV1(2) --------->ARR11(1)    --------->ETT(2)        ----------->HVH21     --------->YAB1----------->HVH21 --------->AGP1<-----------RAV1(2)         --------->ANAC58<---------DEAR3(1)  --------->At4g35610 -------->GLK1(1)      <---------ETT(2)    --------->ANAC58<---------ANAC46   ----------->RAV1(1) ---------GLK1(1)   ----------->TGA1    <------NtERF2  --------->ATERF1(1)  --------->ZAT18    <----- --------->ARR10  <------ZmHOX2a(1) --------->ZAT2--------->ANAC58 --------->GLK1(2)           ------   agagatccggatcaggatcaggatgacgacagcggcgaggctggcaaggccgacggaagcggcggagagaatcaggagcgcagcagcgaccagattgagc  19638700                        <-----------HVH21                       --------->ANAC46                   <---------GLK1(1)                --------->ANAC46                                      --------->ATHB12               --------->LBD16                                    <-----------ARR10              --------->HSFB2a(2)                           ----------->RAV1(1)          --------->GLK1(1)                               ------>ZmHOX2a(1)   <---------------------WRI1 --------->ANAC58         ------>ZmHOX2a(1) ----------->HVH21 --------->GLK1(1)             --------->MYB46(3)  <---------YAB1 ----------->TGA1<------ZmHOX2a(1)              --------->ANAC58  --------->GLK1(2) ----At4g35610<---------LBD16 --------->ANAC58  --------->ANAC58 <---------GLK1(2)         ------>ZmHOX2a(1) --->At4g35610<---------HSFB2a(2)             <---------ALFIN1 ------->GAMYB              --------->TOE2(3)   tcgatgacgacgatttccaggaaacccgtcccaagcccaagcgtagtcgcacccatcctcctcaacagaatctcattggtacaattcatattcctaaatc  19638800  Previous    Next  AGI:  At2g47970.1    Description:  NPL4 family protein. Identical to NPL4-like protein 2 [Arabidopsis Thaliana] (GB:O82264;GB:Q3E6N3); similar to NPL41 (NPL4-LIKE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G63000.1); similar to unknown [Populus trichocarpa] (GB:ABK94012.1); contains InterPro domain NPL4 (InterPro:IPR007717) Range:  from: 19636544    to: 19638252    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g47980.1    Description:  SCC3 (sister-chromatide cohesion protein 3); binding. similar to hypothetical protein OsJ_016623 [Oryza sativa (japonica cultivar-group)] (GB:EAZ33140.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22431.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67841.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain STAG (InterPro:IPR013721) Range:  from: 19638329    to: 19644048    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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