Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    ----------->HVH21                                                                  --------->WRKY12                                                                  --------->WRKY38(1)                                                                 <---------MYB52(1)        --------->ANAC46                                        --------->At4g35610        --------->ANAC58                                        <---------At4g35610      --------->MYB52(1)                                        <-------GAMYB     <---------ARR14(2)                                        <---------MYB46(3)     --------->ARR14(2)                                        <---------ANAC46   --------->ANAC46                                        <------MYB46(1)  <------NtERF2              --------->ANAC58             --------->ALFIN1  --------->RAP2.3(1)        --------->ANAC58            --------->ALFIN1 ------>NtERF2              XXXXXXXXXXXXXXXXXXXXX>MIR864-3P<------MYB83                   <---------- ---------HVH21            ---------->DOF2               <<<<<<<<<MYB98         <---------ZAT18 --------RAV1(1)         --------->At5g28300             <--------P          <-----------RAV1(1) --DOF2 --------->ANAC58----------->GT1                 <-------GAMYB        <---------ANAC46  <-----   tgtcgccgaaacggaacaaattcaaacggtaaagccaactatactttgatcagttttgggttgggccgttgacactgttttgtgggcttctcagtcagtg  19576700                                                             --------->ARR11(3)                                                            <---------bZIP60(1)                                                            --------->bZIP60(1)                                                         <---------YAB1                                                     <-------MYC3                                                     ------->MYC3                                                     ------->MYC2                                                     <-------MYC2                                                    <---------O2                                                    --------->TGA1a                                                    =================================================bZIP_DOF                                                    --------->ANAC55(2)                                                    --------->O2                  <------ZmHOX2a(1)                 --------->ANAC58            <---------YAB1                          --------->ANAC58           --------->AHL20(2)                       --------->ANAC46              ---------->TaMYB80          --------->AHL20(2)                        <---------ANAC55(2)           <---------KAN4(2)   --------->TOE1(3)                            <-----------GT1      <---------TOE1(3)   --------->TOE2(3)              <---------ZAT18   --------->ANAC55(1)        ----------->GT1------- -HVH21   <---------AHL20(2)      --------->ZAT18   <---------TGA1a  <---------TOE2(3)     --------->DAG2 ----ZAT6--------->AHL20(2)<------ZmHOX2a(1)  --------->AHL20(2) <---------ANAC55(2)      ---------->DOF2   gtaaacctaaaattaatataggaactcgaggattagggcccaatccattttaacacgtgatgatatcatgtaaggtttggagggaatatacaaaaagtgg  19576800                                                                             <---------ANAC58                                                                             <---------ANAC46                                                                    <---------ANAC58                                                                    <---------ANAC58                                                                --------->ALFIN1     ------->GAMYB                                                                --------->ATERF1(1)  ================                                    <---------WOX13(1)        --------->ALFIN1    ----------->RAV1(1)                            <----------DOF2              ------>NtERF2       <---------ANAC58   --------->YAB1           <---------DAG2              --------->DEAR3(1)<----------DOF2   --------->ATHB12   ------>ZmHOX2a(1)                 ----------->HVH21 =========================== <---------WOX13(1)  <---------ANAC58  <---------At5g28300<------NtERF2  <---------ANAC58        <--- -->ALFIN1           <---------ANAC58 <-----------GT1  --------->DEAR3(2)<---------ANAC58        <---   atgaatgatagcgaacgagaggtccttgtgcttttttgatttaccctcgagactcgtgccgacggagtggccgtggctttcgtgcaacagtctcgaccca  19576900         --------->ALFIN1        <-------MYC2        <-------MYC3        ------->MYC2        ------->MYC3        <-------MYC4        ------->MYC4       <---------O2       --------->TGA1a       --------->O2    --------------->AGL15       <--------ABF1   <---------------AGL15       <---------TGA1a<-------TEIL                                 <---------ZAT18       <---------ANAC55(2)                                        <-----------HVH21       --------->ANAC55(2)                                   --------->HSFB2a(2)     <---------ALFIN1 ----------------->AGL3          --------->ZAT2    <---------REM1(2) ----------------->AGL1          --------->At4g35610  --------->ANAC46    ----------------->AGL2          <---------At4g35610 ================MYC_MYB                              <---------ZAT2      <---------CCA1(2) ================bZIP_DOF              --------->At4g35610   ------>ZmHOX2a(1)                     == ------CCA1(2)  --------->MYB52(1)     <---------At4g35610   <---------HSFB2a(2)                   <- ------ALFIN1 XXXXXXXXXXXXXXXXXXXX>MIR867         <------ZmHOX2a(1)--------->ZAT18           <-------   tacctcgacacgtgttgaaaacggtccattaagagtaagacatctgtcaataggacagctgtcctagaggtcactcgtctctcacaatccaatccctttc  19577000                                        ------->MYC3                                        <-------MYC3                                        <-------PIF5                                        <-------MYC2                                        ------->MYC4                                        <-------MYC4                                        ------->PIF5                                        ------->MYC2                                       <---------bZIP60(2)                                       <<<<<<<<<<HY5                                       --------->bZIP60(2)                                       <---------PIF3(3)                                       --------->PIF3(3)                                       >>>>>>>>>>HY5                                       --------->O2                                       <---------TGA1a                                       --------->TGA1a                  <---------MYB52(1)                                    ---------------->PIF3(2)         --------->SPL7                                   <-----------------PIF3(1)        <---------MYB52(1)                                  --------->ANAC46                 <---------RAP2.6(3)                                  --------->ANAC58                 <-----------HVH21                                  --------->ANAC58                 <---------SPL7                              ----------->RAV1(1)                 --------->DEAR3(1)                            <------NtERF2--------->ALFIN1        --------->ATERF1(1)     --------->AHL20(2)     --------->At4g35610                  --------->DEAR3(2)        ---------- ================================================bZIP_DOF --------->ARR14(2)            <-----------TBP ---------DOF2              <---------At4g35610           <-----------ARR10           <----------DOF2 ---DOF2             <---------AtLEC2  <---------O2       <---------ARR14(2)  --------->CCA1(2)   gcttaaattaaaactaaaatggagcatggcagcaacatgccacgtggctcaccagtttcaaatctgagccgtccggtgtgatataagtctttttaaagag  19577100                        ------->GAMYB----------->HVH21                       --------->ANAC46                       --------->bZIP60(2)                   *TSS--------->ANAC58                                                   <------ZmHOX2a(1)            <---------MYB52(1)     <----------DOF2                                     <-----------RAV1(2)          --------->MYB52(2) <---------ALFIN1                                        ----------->RAV1(1)         <-------TEIL  --------->ANAC58                                           --------->ANAC46        <---------ARR14(2)  <------NtERF2                                      --------->YAB1        <---------MYB52(1) ------>NtERF2                                      <---------ATHB12 >DOF2<---------MYB46(3)<-----------TGA1                                    --------->WOX13(1)   agagagagcggttcgtttgtctgcaacggcaccaagtctttgacaatggctgaagatgaaatagtagtcgaagaagagcaatcacagccacaggagatta  19577200                                                                                                <----                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                             <-------                                                                                            ------>NtERF2                                                                  --------->ANAC58          <------NtERF2                                                                  --------->ANAC58        <------NtERF2                                     <---------MYB46(3)      --------->At4g35610          <---------RAP2.6(2)                                    <---------AtMYB61        <---------At4g35610          <---------DEAR3(1)         <---------ALFIN1         --------->MYB52(2)        ------->TEIL                 <---------LBD16   --------->ARR14(2)           <---------MYB52(1)       <---------REM1(1)           --------->ANAC46   <---------ARR14(2)          --------->TOE2(3)       --------->At4g35610  <---------GLK1(1)<-------   ctccagttccaccatcttcttcgtcttcgccttcgttagtggtggaagacgacgatgagatgaagctcaagcacttggaattcattcaagtcgcggcggt  19577300        <------NtERF2       ------>NtERF2      --------->RAP2.3(2)      --------->DEAR3(1)      --------->RAP2.3(3)      --------->ATERF1(2)      <---------ATERF1(2)     --------->RAP2.3(1)                                              --------->HSFB2a(2)     --------->ORA47(2)                                           --------->DEAR3(1)     --------->ERF1                                               <---------ANAC46     --------->DEAR4(2)                                           <---------DEAR3(1)     --------->ATERF1(1)                                         <------NtERF2    <---------ATERF1(1)                                        <---------DEAR3(1)                   <    <---------RAP2.3(1)                                --------->ANAC58                             < ------DOF2                                            --------->ANAC46                            -- --GAMYB----------->RAV1(2)                            --------->ANAC58                <---------ANAC46 ---DEAR3(2)                                         <---------ALFIN1 <---------HSFB2a(2)       <---- ---MYB46(3)                   <--------P           <---------WRKY38(1)                <---------ANAC58 --ANAC46       --------->HSFB2a(2)                 <---------ZAT18 <------NtERF2      <---------ANAC58 --DEAR3(1)     <---------HSFB2a(2)  ---------->DOF2--------->ZAT18------>NtERF2 <---------YAB1 <----   ttacttcgccgcctgtttctcgaccctctacgagttggctaaagacaacgctggtccactcaaactcggcgtcgagaacattgaagattgcgttcgaacc  19577400                                                                       --------->WOX13(1)                                                                      --------->MYB46(3)                                                                 ----------->GT1              --------->ANAC58                                <---------MYB52(1) ---------ANAC58                                            --------->YAB1 ---------ANAC58          --------->ANAC46       <---------DAG2--------->SPL7         --------->TOE2(3) ------->ZAT2 --------->ANAC58                   <----------DOF2--------->DAG2      --------->ICU4 -----ANAC58  <----------ID1              <---------GLK1(2) ------>ZmHOX2a(2)  ----------->GT1 -----ANAC58  --------->ANAC46     <----------DOF2      --------->ETT(2)  --------->YAB1   gtgcttgctccattatacgaaaaattccacgacgttcctttcaagcttctccttttcgtcgatcgtaaggtaacaatcagaatgtaattcttaacttgaa  19577500                                                                                                -----                                                                                                -----                                                                                             <-------                                        <<<<<<<<<MYB2                                  --------->ATHB12                                      <------MYB46(1)                                 <---------MYB52(1)                                      <------MYB83                                   <-----------TGA1                                   <---------AtLEC2                                  <-----------HVH21                                   <---------ANAC46                                  --------->LBD16                                   <---------ANAC58                                 --------->ANAC55(2)                             --------->ATHB12   --------->ALFIN1                    <---------ANAC58-              --------->ATHB12     <---------ANAC58<---------------------WRI1       <---------ANAC55(2)             <---------YAB1 <---------ATHB12<-----------RAV1(2)                     <---------ANAC58-   tatcgcttcggtttcatgagtgagaggcaaatgatttgcttggttttcaggtggacgatgtgttcttcgatgttgagacatatgttccgtcattggtgaa  19577600  Previous    Next  AGI:  At2g47780.1    Description:  rubber elongation factor (REF) protein-related. Identical to REF/SRPP-like protein At2g47780 [Arabidopsis Thaliana] (GB:O82246); similar to rubber elongation factor (REF) family protein [Arabidopsis thaliana] (TAIR:AT3G05500.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN59911.1); contains InterPro domain Rubber elongation factor (InterPro:IPR008802) Range:  from: 19577119    to: 19578104    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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