Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     --------------->AtSPL8                                                                   <---------------AtSPL8                                                                  ------>ZmHOX2a(2)                                                                --------->ARR14(2)                                                                <---------ARR14(2)                                                                --------->ARR11(3)                  --------->AHL20(2)                --------->At4g35610         <------ZmHOX2a(1)                          <---------At4g35610    <---------YAB1    --------->ALFIN1                       <<<<<<<<<<<<<<<<<LFY <---------AGP1          <---------ARR14(2)  --------->CCA1(2)                    ----------->HVH21       <---------CCA1(2)        --------->ARR14(2)   taagagatggaggaagggaatgaaatacccaaatggaactggtgaccacattggagcttagccttggatctggtaccatcatcgagcaccgattcgaggc  19561300                                              <---------TOE1(2)                                             --------->LBD16                                        -                                    <---------LBD16                                           -------                                   ------>ZmHOX2a(1)                                --------->YAB1 <-                                <---------HSFB2a(1)                               <---------ARR11(3)<                                --------->HSFB2a(1)                               --------->ARR11(3)-                               <---------ARR14(2)                                --------->GLK1(1) <-                     <------ZmHOX2a(1)      <---------LBD16           --------->ANAC58    --------->ANAC46                  <-----------RAV1(2) --------->LBD16     <-----------HVH21      <---------GLK1(1) <-       --------->ANAC58        --------->ARR14(2)      --------->LBD16--------->ANAC58 <---------ICU4       --------->ANAC58       --------->GLK1(1)       <---------LBD16 --------->ANAC46<---------YAB1<       --------->ANAC46      <------ZmHOX2a(1)--------->LBD16    --------->MYB46(3)<------ZmHOX2a(2)-   aaatcgagcacgagacttcgacaggagacgaggaatcctccgggttcccgcgttttccagggtcacatccaccagcaattcggagatcatcatcgcaacc  19561400             ------>NtERF2            ------>NtERF2           --------->DEAR3(1)          <---------LBD16      --------->ANAC58      ------->GAMYB       --------->At4g35610     --------->ANAC58    ------>MYB46(1)   <----------DOF2          --------->At4g35610    ------>MYB83 ------>TEIL--------->LBD16 <---------ZAT2        --------->MYB52(1) ->P   <---------At4g35610  --------->ZAT2       --------->TOE2(2) --------GLK1(2)  <---------ARR11(3)             --------->TOE1(2) ---------ARR14(2)--------->ARR11(3)            --------->DEAR3(2) -------->ARR14(2)<-----------ARR10             <---------MYB55(2)                               <--- --------CCA1(2)  <---------ARR11(1)            <---------MYB52(2)                  ---------->DOF2 - --------ARR14(1) --------->ARR14(2)            --------->MYB46(3)        <----------ID1     -------- ---------ARR11(1)<---------ARR14(2) --------->ARR14(2)                ---------->DOF2   ---------->DOF2 -------->GLK1(2)<---------CCA1(2)   <---------ARR14(2)     <-----------GT1------------------------>ANAC81   cgaatctttagctccggccatatcttcaccagcaggccaaatcggagggaaccaacgaaaattttcgtttttcgaaagaacaaaaaaaaagaaaagaaag  19561500                                                                              --------->DEAR3(1)                                                                           --------->ANAC58                                                                           --------->ANAC58                                                                          --------->SPL7                                                                      <---------HSFB2a(2)                                                                   <----------DOF2                                                                  <----------DOF2    --------->At5g28300 ---ZmHOX2a(1)                  --------->ANAC58                  <---------DAG2    ----------->GT1 ---------->GT1   --------->YAB1--------->ANAC58             <---------At4g35610<---------ARR14(2) -->DOF2       --------->WOX13(1)                     --------->LBD16 --------->HSFB2a(2)        ----   gattgtcaaacaaaaatcaatgagaaaccatgtctcgctatcgctatctgtctctccgagttcgtctgccttttggaacgccgatgcggtaaatctatcc  19561600                                                      *TSS                                                   --------->ALFIN1                                                 <---------TGA1a                                                 <---------ANAC46                                                 <---------bZIP60(2)                                                 ================================================bZIP_DOF                                                 --------->O2                                                 <---------ANAC58                                                 <---------ANAC58                                                 <---------bZIP60(1)                                                 <---------ANAC55(2)                                                 --------->bZIP60(1)                                                 <---------O2                                                 --------->ANAC55(2)                                                ----------->STF1                                               <---------TGA2(2)                                      <-----------HVH21                                         <----                                ----------->HVH21<---------ANAC55(1)     <------------CBF  <---------       ------>ZmHOX2a(1)       --------->SPL7 ----------->HVH21       --------->YAB1  <----------DOF2 ------>ZmHOX2a(1)           <-----------HVH21----------->TGA1   ------------>CBF     <---------DAG2 -->ZmHOX2a(1)               <---------SPL7 <---------At4g35610--------->LBD16       <---------DAG2   ttcctcttcctctctctctctctctctctctcgtccgacctgttagagatgacgtggttcaaaaccggacaatgacattggactctcccttttcttttct  19561700                                                                                              ------>MYB46(1)                                                                                              ------>MYB83                                                                                            ---------                                                                                            ------->GAMYB                                                                                            <--------                                                                                           --------->MYB46(3)                                 <---------AHL20(2)                                       --------->ANAC58                                 <---------AHL20(1)                                       --------->ANAC58                                 --------->AHL20(2)                                     --------->MYB46(3)                                 --------->AHL20(1)                                     <---------MYB55(2)                              <---------AHL20(2)                                        <---------MYB111(1)                      <---------YAB1                                   --------->MYB46(3)------->GAMYB                      <---------AHL20(2)                              ------>MYB46(1)   <---------MYB111(2)                   <---------AHL20(2)                                 ------>MYB83     ------>MYB46(1)    <-----------------AG  <---------ICU4                           --------->MYB46(3)  ------>MYB83    <-----------------AGL1--------->YAB1<----------DOF2     --------->YAB1          --------->MYB46(3) ------>ZmHOX2a(1) --------->AHL20(2)<-----------GT1       <---------YAB1     <---------At4g35610 ------DOF2<---------ANAC46 <---------YAB1                <---------ARR11(3)  --------->At4g35610 -DOF2 <------------CBF  <---------YAB1 --------->TOE2(3) --------->ARR11(3)  ----------->RAV1(2)   -   ttcctctcccattgtggataattttttattattattttattactttagttttggatagatgatcatcaaaccatccatccatctgaaccaacaaccaaac  19561800                    <---------YAB1                  --------->YAB1                  --------->ATHB12                 <---------ATHB12                                                   <-----------HVH21 <---------AHL20(2)--------->TOE2(3)                                               <----------DOF2 >AtMYB61    --------->AHL20(2)                                                 <-----------GT1 -MYB59      <---------AHL20(2)      --------->ATHB12          --------->YAB1--------->YAB1 -------->AHL20(2)<---------ICU4<---------AHL20(2)          <----------DOF2 <---------YAB1 <-------TEIL   tataaatttgttcatttaaatcattaatctctatttagttgatttgttttcttctctagtctctttcatatgaagtttattataactttcacatccattt  19561900                                                 --------->ARR14(2)                                                 <---------ARR14(2)                                                <------ZmHOX2a(1)                                       <---------WOX13(1)                                      <---------ANAC58                                      <---------ANAC58                             --------->ANAC58 <---------TOE2(3)                    --------->YAB1   --------->ATHB12          <---------GLK1(2)  --------->ANAC58 <---------TOE1(3)                                    --  <---------YAB1   <---------YAB1   <---------YAB1                  ----------->GT1        <-------TEIL   tgttatgagaaagattagcatattataacacacgaatattgattgtctaaggataccaaaacattgtatgtagtaaacaattacacatatagatgcaaat  19562000                                                                                             --------                                                                                         -------->ZAP1                                                                                       <---------WRKY18(1)                                                                                      --------->WRKY12                                                                                      --------->WRKY45                                          <-----------GT1                             ----------->HVH21                                    <---------AHL20(2)                                --------->WRKY38(1)                                    <---------YAB1   --------->At4g35610            <----------DOF2                            --------->ANAC58 <---------DAG2                        <---------ANAC58                            --------->ANAC58 <----------DOF2                       <---------ANAC58 ----->TEIL    <---------MYB52(1)  <---------AHL20(1)<---------At4g35610       <----------DOF2   gtatattgtcttgaatcgttgtttcacatcaagctaatattatttcactttattcttctgaattagaagactatgcagagactttgctttgaccgagtag  19562100                                                                                                -----                                                                                               ------                                                      --------->ICU4                           ------                                                      <---------ATHB12                        -------                                                 --------->ANAC58                             -------                                                 --------->ANAC58   <---------ZAT14         ---------                     <---------ARR11(3)        --------->DEAR3(1)   --------->ZAT18         <--------                     --------->ARR11(3)  <---------ICU4             --------->ZAT14      --------->LBD16      <---------TOE2(2)                  --------->YAB1--------->YAB1    <xxxxxxxxxxxxxxxxsmallRNA(se3)    <---------MYB52(1) ------>ZmHOX2a(2)<------ZmHOX2a(2)           <---------ZAT18     --------->LBD16 ->REM1(2)     --------->ARR11(3)      <---------ARR11(3)   --------->ICU4         --------->SPL7   ccttcccttaggtttcagaccttgatcttaggcttcttcacgatcatcaccgagcaatgagcatgatgagcgcagtagtcactcgtactcccgagaaccg  19562200  Previous    Next  AGI:  At2g47700.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G05545.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40014.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 19559384    to: 19561654    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g47710.1    Description:  universal stress protein (USP) family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49050.1); similar to universal stress protein family protein [Brassica rapa] (GB:ABV89633.1); contains InterPro domain UspA; (InterPro:IPR006016); contains InterPro domain Universal stress protein (Usp) (InterPro:IPR006015); contains InterPro domain Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729) Range:  from: 19561904    to: 19563135    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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