Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        <----------DOF2                                                    ------->TEIL                        --------->WOX13(1)        <---------ZAT14                       <---------AHL20(2)         --------->ZAT14                 <------ZmHOX2a(2)            --------->GLK1(2)                <---------ARR11(3)           <---------GLK1(2)                --------->ARR11(3)      <---------ARR11(3)     <----------DOF2          <---------ANAC55(2)           --------->ARR11(3)     --------->TOE2(3)             <-------    <---------TOE1(2)  --------->AHL20(2)<------ZmHOX2a(2)<---------At4g35610   ---------->ID1   gagtcccatgatatgtaagatcgaattaatcacttgtttgaagatcagaaactgtactttagctactttaatctctaattttgtcattttcaatttttat  19528500                 --------->MYB52(2)              --------->TOE2(3)             <---------YAB1                                            --------->YAB1            <---------TOE2(3)                                          ----------->GT1           <---------ICU4                 <----------DOF2             ----------->GT1       ---------           --------->YAB1              --------->ARR11(3)      ----------->GT1     <------ZmHOX2a(1)          <---------ATHB51       <---------YAB1             <---------ICU4     --------->TOE2(2)   <-     <-----------GT1            --------->AHL20(2)    ----------->GT1 <---------YAB1       <---------YAB1 --YAB1 --------->YAB1 <-----------GT1 <---------ARR11(3)  --------->ICU4      --------->TOE1(2)   --   tctggttttacaataatgttagttttatcttcatttttataaatctttttttatatgtgtaaaaatggcaaaatgataaaacataggaaacttataattg  19528600                        <---------YAB1                               --------->AHL20(1)                     --------->AHL20(2)                              <---------AHL20(1)                     <---------AHL20(1)                              <---------AHL20(2)                     --------->AHL20(1)                              --------->ARR11(3)                 --------->AHL20(1)                        <---------WOX13(1)                --------->AHL20(2)                       --------->ATHB12            <---------AHL20(2)                           <---------AHL20(2)      <---------YAB1 <---------AHL20(2)               --------->YAB1 --------->AHL20(2)  <---------DAG2<---------AHL20(2)                <---------AHL20(2) <---------ARR11(3)         <----  <----------DOF2--------->AHL20(2)              --------->AHL20(2) --------->AHL20(2)        ------- >ATHB51    --------->AHL20(2)        <---------AHL20(2)--------->AHL20(2)                   <------- --------ARR11(3)<---------AHL20(1)  <---------AHL20(2) <---------AHL20(2)     --------->YAB1======== ------->ARR11(3)<---------AHL20(2)  --------->AHL20(2)<---------AHL20(2)      --------->AHL20(2)----   agacctttatgattttaaataaatttattattcaaaaattttaatttcaaattttatattaattgacaaaatatatttcaataaaactgttcagaactat  19528700                                     --------------->AGL15                                     <---------------AGL15      --------->AHL20(2)       <---------AHL20(2)      <---------AHL20(2)<-------TEIL --------->TOE2(3)                                              -  <------ZmHOX2a(1)  <---------HSFC1(2)                <---------YAB1                          <----- -----YAB1           --------->HSFB2a(1)         <---------ZAT6          --------->YAB1        ------ -->YAB1             <---------HSFB2a(1) --------->TOE2(3) ----------->GT1         ---------->DOF2  < ----------AGL3      --------->HSFC1(2) --------->ATHB12--------->YAB1  <---------ATHB12       ------ ====================================================MADS_MADS        --------->WOX13(1)----------->GT1 ----->YAB1      <---------TOE2(3)<-----------GT1----------->GT1    ------------>CBF<---------TOE2(3)   aataggatttaaaaatgttaagaaaattcgtatttttttccttcattagtagtgtttataatagaaaaaaatcaatcaatatttctaaagttgaaaataa  19528800                                   --------->AHL20(2)                              <---------AHL20(2)                     ----------->GT1                              --------->AHL20(2)                   <---------ANAC46                              <---------AHL20(1)                   *TSS                              --------->AHL20(1)                   ----------->GT1                         <-------TEIL                             --------->ALFIN1                    --------->AHL20(2)<---------AHL20(1)        <---------ANAC58 -------->MYB52(1)  <---------AHL20(2)<---------AHL20(2)        <---------ANAC46 ----AHL20(2) <---------AHL20(1)   <---------AHL20(2)           <---------ANAC58                 ---- --->AHL20(2) --------->AHL20(1)  --------->YAB1            <------------CBF                     <--- -----------GT1    <---------AHL20(2) --------->AHL20(1)  --------->ARR11(3)        <---------At4g35610 --->AHL20(1) <---------ARR11(3) <---------YAB1------>ZmHOX2a(2)<-----------RAV1(1)<---------ARR11(3)   aataacagtgctacgatatattttaaatacattttattaaaatatttgatctaaacagaagaaattgtgtggggaaaatcgacgagagcttatcaattca  19528900                                                            <---------HSFC1(2)                                                            <---------HSFB2a(1)                                                          <---------GLK1(2)                         <           --------->ZAT14                        --------->ANAC46                       --------->LBD16  <---------ALFIN1         <---------REM1(2)    --------->ANAC58                 --------->TOE2(3)<-- ----->At4g35610           <---------ZAT14      --------->ANAC58                 <---------MYB59  --- ------At4g35610           --------->ZAT14      --------->ANAC46                 --------->TOE1(3)---   tctcacactcttcttcactctcttctctctacacacacacacacacacacacacaaaatggattcttcgaatgttgaagaaaacctaaacccagaaacaa  19529000        <----------ID1     --------->At4g35610  --------->At4g35610  --------->LBD16                                        <----------DOF2 ---------LBD16                                      <---------CCA1(2) -------ARR14(2)   ------>MYB46(1)             ------>MYB83             <-----------GT1 ------>ARR14(2)   ------>MYB83                ------>MYB46(1)     --------------------->WRI1 ------>GLK1(2)   <---------ALFIN1           --------->MYB46(3)----------->HVH21------>ZmHOX2a(1)   aatccgcagaagaacaaaacccacttgccattttccattcttctctaccaatcgcatctctttctctgaccttgttcccatcctcgactcaatttctcaa  19529100                                   --------->ANAC46                                   --------->ANAC58                                   --------->ANAC58                                  --------->SPL7                              ------>ZmHOX2a(2)                             <------ZmHOX2a(2)                                                   ----                            --------->ARR14(2)                                                -------                            <---------ARR14(2)                                               <-------                            <---------ARR11(3)                                               --------    <---------At4g35610     --------->ARR11(3)                   <----------DOF2 <----------DOF2----- <---------ANAC58    ----------->GT1                         <XXXXXXXXXXXXXXXXXXXMIR156H     -------- <---------ANAC58   <---------TOE2(3)                    <---------CCA1(2)       <---------DAG2 <----   attgtttgctcatcatccaaacaaggttaagatccctacgcaggcttcttctctcactcatctctctctttcttctgtctctccttttccttcttccaga  19529200                                                                                              ------>NtERF2                                                                                        <---------ALFIN1                                                                                       <---------At4g35610                                                                                       --------->At4g35610                                                                                      --------->DEAR3(1)                                                                                     --------->ATERF1(1)                                                                                     <------NtERF2                                                                                     --------->RAP2.3(1)                                                                                    <---------RAP2.3(1)                                                                                    --------->ABI4(1)                                                                                    <---------ATERF1(1)                                                                                   --------->RRTF1(3)                                                                                   <---------ALFIN1                                                                                   --------->ATERF1(2)                                                                                   <---------ATERF1(2)                                                                                   <---------DEAR3(1)                                                                                   --------->RAP2.6(2)                                                                                   --------->RAP2.3(2)                                                                                   --------->DEAR3(1)                                                                                   --------->RRTF1(2)                                                                                   --------->RAP2.3(3)                                                                                   --------->ANAC46                                                                                  --------->ORA47(2)                                                                                  --------->ATERF1(1)                                                                                  --------->ERF1                                                                                  --------->RAP2.3(1)                                                                                  --------->RAP2.6(1)                                                                                  --------->DEAR4(2)                                                                                  --------->RRTF1(1)                                                                                 ------>NtERF2-------                                                                                 --------->LBD16                                                                                 <---------ATERF1(1)                                                                                 --------->At4g35610                                                                                 <---------At4g35610                                                                                --------->DEAR3(1)        <---------ARR14(2)                                                ------>ZmHOX2a(1)  --------        --------->ARR14(2)                                              ------>ZmHOX2a(2)    --------  <----------DOF2                                                       =============HOX2a_HOX2a<---- ----->GLK1(2)             ------->GAMYB                            --------->WRKY12------>NtERF2  <- -->LBD16                -------->P                                 --------->WRKY38(1)------>NtERF2 --HSFB2a(2)         <---------At4g35610                           <---------MYB52(1)--------->DEAR4(2) ->HSFB2a(2)         --------->At4g35610                          <-------GAMYB <---------ALFIN1<---- ---->ARR14(2)--------->AtMYB61                                  <---------ANAC46--------->ABI4(1)--- ->HSFC1(1)   <---------ALFIN1                               <---------SPL7     --------->ANAC46----- -----GLK1(2)--------->MYB46(3)         <---------ALFIN1  <-----------HVH21   ------>ZmHOX2a(1) <----   atctctttcaaatccaccatcgctgctaaccctcttcaatcccctctctccatcgtccctcgtcgtcccgttgatccttcctccgccgccgctctccgcc  19529300        <---------SPL7       <---------ANAC58       <---------ANAC58       <---------ANAC46     <-----------HVH21        --------->LBD16  --------->ZAT2             <---------ANAC58  --------->At4g35610        <---------ANAC46  <---------At4g35610        <---------ANAC58                          --------->ALFIN1 -->LBD16                   <-----------------------TaNAC69(2)   ------->GAMYB ->ANAC46         --------->LBD16                               --------->MYB46(3) ->DEAR3(1)      --------->ANAC58                             --------->MYB52(1)           <---------ZAT14 -----ANAC58     --------->ANAC58    --------->ANAC58         ------>NtERF2                --------->ZAT14 --------ZAT2    <---------ANAC55(2) --------->ANAC58        --------->DEAR3(1)  <---------MYB52(1) -----ANAC46     --------->ANAC55(2) --------->ANAC46      ------>NtERF2 <---------ANAC58  --------->WRKY12 ------>ALFIN1  <---------LBD16   --------->ZAT18          --------->LBD16  <---------ARR14(2) ---->DEAR3(1)--------->ARR14(2)--------->REM1(2)         --------->ANAC46  --------->ARR14(2) -----ANAC58  <---------ARR14(2)--------->ARR14(2)       <---------LBD16 <---------ANAC58 <---------MYB52(1)   gtgctgctgtcgtctggttccgcaatgacctccgtgtccacgacaacgagtgtctcaactccgccaacgacgagtgcgtctccgttttgcccgtttactg  19529400  Previous    Next  AGI:  At2g47590.1    Description:  PHR2 (PHOTOLYASE/BLUE-LIGHT RECEPTOR 2). Identical to Blue-light photoreceptor PHR2 (PHR2) [Arabidopsis Thaliana] (GB:Q8LB72;GB:O22253); similar to CRY3 (CRYPTOCHROME 3), DNA binding / DNA photolyase/ FMN binding [Arabidopsis thaliana] (TAIR:AT5G24850.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40029.1); contains InterPro domain DNA photolyase, N-terminal; (InterPro:IPR006050); contains InterPro domain DNA photolyase, FAD-binding/Cryptochrome, C-terminal; (InterPro:IPR005101); contains InterPro domain Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729) Range:  from: 19528867    to: 19531133    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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