Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     --------->AHL20(2)                                   --------->AHL20(1)                                   <---------AHL20(2) ---->AHL20(1)                     <---------YAB1 -----AHL20(2)                    --------->AHL20(2) ---->AHL20(2)     ----------->HVH21 --->AHL20(2)    --------->At4g35610                              <---------ANAC55(2)          ------ ----AHL20(2)    ----------->RAV1(2)        --------->YAB1        <---------ANAC46      <---------CCA1(2)   atttgacaaaaaaaaaaacacctgaaatgtatacaattttattgtttgataacaaaatttgtgaagttaagtgaatgaattcaaaatcgtttatcttcta  19455000         <---------WOX13(1)          <---------ANAC58       --------->ATHB12              <---------ANAC58  <---------AHL20(1)              <---------ZAT14                                             <------  --------->AHL20(2)              <---------ZAT18                                           <--------  --------->AHL20(1)       --------->CCA1(2)                                               --------->AHL20(1)  <---------AHL20(2)      --------->ARR11(1)                                               <---------AHL20(1) --------->AHL20(2) --------->AHL20(2)<----------DOF2                            <---------ZAT18 --->HSFB2a(2)  ---------->DOF2   --------->ZAT18                    <---------ARR14(2)   <---------AHL20(2)   gcattaaattgattaatctaaagtaaatgatacgagtgtgcttgtttgatgctcttctgtgttattttgcaaatttgaattcgttcacttatatatattt  19455100           --------->DAG2     <-------TEIL   <-------GAMYB --------->ARR11(3)  <---------DEAR3(2)  <---------MYB46(3)              <-------TEIL <---------DEAR3(1)       ----------->GT1                                  ----------->GT1 <---------DREB2C(2)      --------->ANAC58           ----------->GT1      --------->DAG2 <---------RAP2.6(2)  <-----------GT1      --------->ANAC58               <---------TOE2(3) ---AHL20(2)     <---------ARR11(3) ------->TEIL <-----------GT1   ----------->GT1 -AHL20(2)---------->DOF2 --------->ANAC58 --------->ANAC58 --------->GLK1(2)          ------->TEIL <   ttggcggttcagaaaagtagattttaacaagaaaaatgcatcggcacggtatcaccagttaaaatctgaaggtaaaaaggttatatatgaatttgtaaga  19455200                                        ---------->DOF2                                  <---------ZAT2                                  <---------At4g35610                                  --------->ZAT2                                --------->ATERF1(1)                                <-----------RAV1(2)                             <------NtERF2                            <---------DEAR3(2)                           <---------RAP2.6(2)                           --------->ETT(1)                           <---------DEAR3(1)                           <---------RAP2.3(3)                           <---------DREB2C(2)       <-----------GT1                          --------->RAP2.6(3)      --------->YAB1                        <-----------RAV1(1)       <---------ATHB51                             ------                  <------ZmHOX2a(2)  --------->At4g35610              --------->ANAC46         ------                 --------->ARR14(2) --------->RAP2.3(2)       --------->YAB1              --------->MYB46(3)          ---------->DOF2<-----------HVH21  ----------->GT1  <---------ATHB12  <---------TOE2(3)  --- ----------->RAV1(1)    ====================RAV --------->WOX13(1)    <---------O2      ----------->RAV1(1) ----------ID1   <---------ARR14(2) --------->RAP2.6(2)      <---------YAB1<----------DOF2--------->REM1(1)   aaacaacaaaaattaagccgatctatttgtcggcccagccgctaaagagtcaattatacccctataattctcacgcggtttaagaaaatgcaacaacaag  19455300       <---------ARR14(2)      <---------AHL20(2)        --------->ANAC55(2)                    <----       ------->TEIL          <---------CCA1(1)           <---------ANAC55(2)                    -----       --------->ARR14(2)    <---------RVE1(1)           <---------ANAC46                       <----      <---------CCA1(2)     <---------GLK1(2)            <---------ANAC58                       <----    --------->ALFIN1        --------->ARR11(3)          <---------TOE1(2)                       -----  <---------ANAC46          <---------ARR11(3) <---------AHL20(2)       ------>ZmHOX2a(1)     ------- --->ANAC58    --------->At4g35610           <---------YAB1 <------------CBF                 <------- --->ANAC58    <---------At4g35610       <---------ANAC58<---------ANAC58                    -------- ------>MYB52(1)      --------->ANAC46   <---------ANAC58<---------ANAC55(1) *TSS         <----------   taaggggtgtatctgtcttctcacacataagatttttttttttgcttattaaaactcttacgtattgttgtttcctattctcaaatttgtattttccaga  19455400   --------->LBD16  --------->HSFB2a(2)  <---------HSFB2a(2)  --------->HSFC1(1)  <---------HSFC1(1) <---------LBD16 -----ARR14(2)                                                                     ----------->RAV1(2) ---->ARR14(2)         ----------->GT1                                             --------->ZAT2 -----ARR11(3)         --------->ANAC58                                    <---------ZAT18 -----GLK1(2)          --------->ANAC58                               <---------ANAC46 ---->ARR11(3)      --------->At5g28300                               <---------ANAC58    --------->At4g35610 -->LBD16<---------ARR11(3)    <----------ID1                         <---------ANAC58    <---------At4g35610 --HSFB2a(2)       ----------->GT1 ---------->DOF2            <---------ANAC58  ----------->HVH21 ->HSFB2a(2)     --------->At4g35610       <-----------HVH21  <---------ANAC58  <---------ETT(2) -GT1    --------->ARR11(3)  ---------->DOF2     <---------ZAT18     XXXXXXXXXXXXXXXXXXXX>MIR858  ---   ttttccagaaaaatctcacagcggtaagaaaaaaagaaaaagaagagtcagtggtcttgttgtttcgttcttccttgttcgctcgacctggccgatgtct  19455500                   --------->ANAC46                   --------->ANAC58                   --------->ANAC58                <---------ZAT18                --------->ZAT18               --------->ANAC58               --------->ANAC58                                                                ------            --------->ATERF1(1)                                                                ------          --------->ARR14(2)                                                                   <-----      <-----------RAV1(2)                                                                      <-----   <------ZmHOX2a(1)                                                     <---------MYB59<---------ARR14(2) ----->P <------ZmHOX2a(1)          <-----------GT1                  ----------->HVH21  --------->ARR14(2)   aaccaggaccaggagacgcgcacacaattcgcagaatgtaacgttgttgctactcttcttctctcgtttctgtgacctaagaaccattcgaattcgctgc  19455600                                                                    <---------At4g35610                                                        --------->ANAC58                           --                                                        --------->ANAC58                           --                                                       ------>NtERF2--------->At4g35610          <--- <---------CCA1(2)                                    --------->DEAR3(1)                         <--- --->ZAT2    <---------ANAC58                        --------->MYB46(3)                      -------- --->At4g35610                              <----------DOF2      <---------At4g35610         -------- ----At4g35610    ------>ZmHOX2a(1)     --------->GLK1(2)--------->MYB46(3)     --------->At4g35610-- ----ZAT2    <---------ANAC58          <---------GLK1(2)<---------ALFIN1        <---------ZAT2<------   tccgtctctctggtttcgtccttgaaaaatcgtctactcgagattcctttctctagccacccatctcaactgctgagtagcaagctgtatttttgttgac  19455700 ---->MYB83                                                              --------->ANAC55(2) ------->MYB52(1)                                             <-----------GT1 ------MYB46(2)                                            <---------ARR14(2) ------MYB59                                           --------->HSFB2a(2)       <---------YAB1 ->WRKY12                                          <---------At4g35610   <---------ANAC58 ->WRKY38(1)<---------GLK1(2)                      --------->ZAT2        <---------ANAC58           < ---->MYB46(1)                              <----------DOF2--------->ARR14(2)   <-----------GT1   <-- ---WRKY18(1)                             ---------->ID1--------->LBD16<-----------GT1            <--   ctaactaaaccctagcttcttcgaggttttctcttgattcccttgtcttttctagctcccgaatttgccagttttacttgattttcatttttcatgtgtg  19455800                       ------>ZmHOX2a(2)                     --------->ARR11(3)                     <---------ARR11(3)                     <---------ARR14(2)                               >>>>>>>>>ARR2                     <---------AGP1                                   >>>>>>>>>ARR1 ---------ANAC46     --------->ARR14(2)                             <---------TOE2(3)          <----- -------ANAC46<---------AHL20(2)    --------->ATHB12                <---------YAB1        <---------- -------bZIP60(2)   <---------CCA1(2)          <-----------GT1      <---------TOE1(3)<----------DOF2   atgtgtgtttttctatgtaattggatcttagggttttttgatttgggaataactctttgaaatcgcatttaagattgtgtctcaatgcttttttacgatc  19455900  Previous    Next  AGI:  At2g47410.1    Description:  nucleotide binding. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G49430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40110.1); similar to Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 [Medicago truncatula] (GB:ABN06020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44897.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain Bromodomain (InterPro:IPR001487); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 19455377    to: 19464335    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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