Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <---------AtMYB61                                                                                <---------MYB52(1)                                                                               --------->LBD16                                             <---------ATHB12                 --------->LBD16                 <----------DOF2    <-----------RAV1(1)                      <---------LBD16              <---------ARR11(3) --------->MYB52(1)                         <---------LBD16         --------->ZAT2        <----------DOF2  <----------ID1            <-----------GT1 *TSS         <---------ZAT2 ---------->DOF2    --------->WOX13(1)     <---------ANAC46    ----------->GT1         --------->At4g35610--------->ARR11(3)<---------ICU4      <---------ANAC58  <---------ANAC46         <---------At4g35610<---------ARR11(3)--------->YAB1      <---------ANAC58<---------MYB46(3)   tttcgcttctcagctagagcttttagcaaagagcttaactgttgccaattacgacgaaatttagggcttcgtgttttttcccggtggtatgtaaaatcgg  19438800                                         --------->DEAR3(1)                                         --------->DREB2C(2)                                        --------->DEAR3(2)                                     <-------TEIL                                     <---------ZAT14                                     --------->ZAT14                                    <-----------HVH21                               <---------LBD16                              <-----------GT1                             <-----------GT1                 ----------->GT1<---------LBD16                 --------->ANAC58 --------->LBD16                 --------->ANAC58--------->LBD16        ------------>CBF --------->AHL20(2)                                      <----------DOF2    ----------->GT1      <---------AHL20(2)------>MYB83                       <---------PCF2 <------ZmHOX2a(1)      <---------AHL20(2) ------>MYB46(1)                  <---------ZAT18   <------   agaggaaggaaacaatctcaagtaaaattattttcccggttcaccgacttgtcatcgtctatacatttgggcctctagtgggcctttgtttagcattttt  19438900                                                                                          <--------ATHB1                                                                                          --------->ATHB51                                                                                          --------->ATHB12                                                                                          <---------ICU4                                      <---------ATHB12                                    --------->YAB1                                  --------->MYB46(3)                                      <--------HAHB4                                 --------->ANAC58                                         -------->HAHB4                                 ------>MYB46(1)                                         <---------ATHB51                                 --------->ANAC46                                        <---------YAB1                                 --------->ANAC58                                   <---------ANAC55(2)                               --------->AtMYB61                                    --------->ANAC55(2)                              --------->MYB46(3)           <----------DOF2   --------->YAB1      <---                            <-----------GT1             <-----------GT1 <---------TOE2(3)--------->ICU4 ---AHL20(2)       <---------DAG2------>MYB83     <---------ZAT6   --------->TOE2(3)----------->GT1   tttttttttttctaagggtcaatttttgtaaaaccacccaattagtggattagtgttttttctttgtaacatttatggattataacatgtaataattaga  19439000                                                      ----------->GT1                       <---------YAB1            --------->YAB1                     <---------ICU4              -------->HAHB4                     --------->ATHB51            --------->ATHB12                          <---------                     <--------HAHB4           --------->YAB1                              <---------DAG2            <---------AHL20(2)                <---------ICU4                            ------->TEIL           <---------ICU4                     <--------HAHB4                          --------->ZAT18          --------->ICU4                     --------->AHL20(2)                       <---------ZAT18      --------->ARR11(3)         <-----------GT1<---------YAB1                      --------------->AtSPL8      <---------ARR11(3)<---------AHL20(2)   --------->ICU4                         --------->At4g35610 ---ZmHOX2a(2)      --------->ICU4         --------->YAB1 <---------AHL20(2)  --------->ICU4      <--   tcagataagataatttttatgcattattaatggttttactagtaagaataattatagggtttaattttgggttttgagcaaaaatgagcgcaccttttta  19439100                                                                    <------------CBF                                                                   --------->ATHB51                                                                   <--------ATHB1                                                                   --------->YAB1                                                                   <---------ICU4                                                                   -------->HAHB4      <---------AHL20(2)                                                                  --------->ICU4   <----------DOF2                                                       --------->AHL20(2)     <---------ZAT18                                                       ----------->TBP       <---------ANAC58                                                      <---------ARR11(3)     <---------ANAC58                                                      --------->AHL20(1)    --------------->AtSPL8                                                      <---------AHL20(1)<-----------RAV1(1)       <--                  <---------DAG2                 ------------>CBF <---------ATHB51<---------DAG2  ---                  <----------DOF2                <---------ATHB12 <---------YAB1------->TEIL     <--- -DOF2 --------->ANAC55(2)                 <-----------GT1        <---------AHL20(2)  --------->AHL20(2) ---------GT1 <-----------GT1           --------->AHL20(2)  ----------->GT1<---------ANAC46 ---------   aaacctctcatgtaatttagcttttccaaaattttgacacatttaaaaccagtcaatatatatagttaataattgtgttgtgtaccttttaaattcttaa  19439200                                                                                                   --                                                          --------->TOE2(3)                       <--                                                       <-----------GT1                           <---                                                      --------->YAB1                            <----        --------->AHL20(2)                           <---------ATHB12                           <----        <---------AHL20(2)                           --------->ICU4           ---------->ID1    <----       <---------MYB52(1)                          --------->WOX13(1)        <-------GAMYB   --------     ----------->GT1                            --------->ANAC58            <---------MYB46(3)------>NtERF2 -------ICU4                 <---------TOE2(3)  --------->ANAC58          <---------MYB52(1) <------- ------>YAB1<---------AHL20(2)                ---------->DOF2         <---------At5g28300   <-------- ------ATHB12        <----------DOF2       --------->AtLEC2------>ZmHOX2a(1)--------->MYB52(2)------- >TOE2(3)   --------->AHL20(2)           <---------------AGL15       <-----------GT1<-----------GT1<-   tcatcaccagttaattaaaaaaacttttgttaagaaaatggagccatacaaagcaattatcctcatcggagttactgtttgttgttatacattctccggc  19439300                        --------->ZAT14                      <---------RAP2.6(3)                      <---------SPL7                  ------------------>SPL14                 <---------MYB55(2)                 --------->DEAR3(1)                 --------->ATERF1(2)                --------->ATERF1(1)                --------->DEAR3(2)                <------NtERF2               ------>NtERF2                                                                   ------               --------->MYB52(1)                             ----------->HVH21              <-------              --------->DEAR3(1)                            <---------TGA1a                 ---------           --------->bZIP60(2)                              --------->TGA1a                --------->YAB1 --------->MYB46(3)  <---------MYB46(3)                     --------->O2                 <---------ARR11(1) ------->ARR14(2)<---------ATERF1(2)                        <---------O2                <---------CCA1(2) -------CCA1(2)<---------ATERF1(1)                          --------->ANAC55(2)        --------->LBD16 ------SPL7--------->O2<---------MYB52(1)                   --------->At4g35610       --------->ANAC55(2) -----ANAC58  <---------ALFIN1                              ----------->RAV1(2)       --------->ANAC46 -----ANAC46------>NtERF2                                   <---------At4g35610     ------>MYB46(1) -----ANAC58<-----------HVH21                               <---------ZAT2          ------>MYB83 ->ANAC46  --------->ANAC58                                 --------->ZAT2         --------->MYB52(1) --DEAR3(1)--------->ANAC46                               <---------ALFIN1        --------->AtMYB61 -LBD16    --------->ANAC58                              ------>ZmHOX2a(1)        <---------ALFIN1 -->LBD16<---------ALFIN1 <---------ANAC46         --------->ZAT2                <---------MYB55(2) --------ARR14(2)--------->MYB46(3)                <---------ZAT2                --------->MYB46(3)   gtatccaacgtccacgccaccggccgttcagtagaagagacatcccaagtccctgcttcctcacctgacccttcgctcatcgaaccacccgtatcatcaa  19439400                                                                          --------->ATERF1(1)                                                                          --------->At4g35610                                                                          <------NtERF2                                                                          <---------At4g35610                                                                         <---------ERF1                                                                         <---------RAP2.3(1)                                                                         ------>NtERF2                                                                        <---------RAP2.3(2)                                                                     <---------O2                                                                     --------->ANAC46                                                              <---------At4g35610                                                              --------->At4g35610                                                      <---------MYB59--------->O2 --------->ANAC46                                                      ------>ZmHOX2a(2) <---------DEAR3(1)                             ------>NtERF2           <------ZmHOX2a(2)  <---------RAP2.6(2)                            <---------ALFIN1        <-----------ARR10<---------DEAR3(1)        ------                       ------>MYB46(1)              <---------ARR11(1)  --------->ATERF1(2)    ------                       ------>MYB83                 <---------AGP1   --------->TGA1a    --------->ANAC46                  --------->ANAC46                  <---------ARR11(3)  <---------ATERF1(2)  --------                 --------->LBD16                    <---------ARR14(2) --------->RAP2.6(3) --------->SPL7           --------->ZAT2--------->ANAC46           --------->ARR14(2)<---------ATERF1(1)--------->LBD16     <---------SPL7  --------->AtMYB61             <---------ARR14(1)<---------TGA1a   <---------LBD16    <---------ETT(2) --------->DEAR3(1)            <---------CCA1(2)<---------LBD16 <---------ALFIN1  <-----------HVH21  <---------ALFIN1             --------->LBD16  <---------ALFIN1--------->LBD16 --->WOX13(1)   --------->ANAC46       <---------ARR11(3)   <-----------GT1      <---------LBD16 --YAB1    <---------ATERF1(1)--------->TGA1a   <---------LBD16 --------->PCF2 --------->ARR14(2) >TOE2(3) --------->ANAC46 --------->MYB46(3)  --------->MYB52(1) ----------->HVH21--------->At4g35610   tctcggtcgtcccagcctccgcaccatcccccacctctgaagacattaacaccggatctaatttagctcccacggcggcagtctccgcacccggaccatc  19439500                                              ===============HOX2a_HOX2a                                            --------->ARR11(3)                               --------                                        --------->At4g35610                                 <-------- >MYB46(1)                              <---------At4g35610                               --------->WOX13(1) >MYB83                             --------->YAB1    ------>ZmHOX2a(1)                  <<<<<<<<<WRKY18 ->AtMYB61                  <-----------HVH21 ------>ZmHOX2a(2)                  <---------GLK1(1)   ccaagaagacatagacatcaacttcgactctgtcacaaacatagctgatctagctcctaaatttgaacatataaacaaattcgatttctcgtcaatgaaa  19439600                                                                        =============================                                                                        ==========================HOX2a_HOX2a                                                                        =============================                                                                       ==============================                                                                       <------ZmHOX2a(2)                  ------>ZmHOX2a(2)                                    ==============================                 <---------GLK1(1)                                     --------->GLK1(1)                 --------->GLK1(1)                                    --------->AGP1                 <------ZmHOX2a(2)                                    <---------AGP1                <---------ARR11(3)                                    <-----------ARR10                --------->ARR11(3)                                    <---------ARR11(1)            ---------->DOF2                                          <---------ARR14(1)         <------NtERF2                                               <---------CCA1(2)      --------->RAP2.6(3)                                           --------->LBD16     --------->MYB52(1)                                            --------->HSFB2a(2)    <---------TGA1a                                                --------->LBD16    <---------O2<---------AGP1                                    <---------LBD16    --------->TGA1a                                          --------->GLK1(2)    --------->ANAC58                                        <---------GLK1(2)        --------->YAB1    --------->ANAC46                                     <------NtERF2<---------ARR14(2)    --------->O2<-----------ARR10                        --------->LBD16------>ZmHOX2a(2)    ===================bZIP_DOF                          ------>NtERF2--------->ARR14(2)         <---    --------->ANAC58                                 --------->DEAR3(1)===========================HOX2a_HOX2a    ----------->HVH21                              ------->TEIL  <---------LBD16   --------->ANAC58 ->YAB1<---------DEAR3(1)             --------->REM1(1)<---------LBD16<---------ARR11(3)   <------ZmHOX2a(1) -ATHB12------>NtERF2       XXXXXXXXXXXXXXXXXXXXX>MIR850--------->DEAR3(1)         --------->ANAC58 <   atcgacacgacggcgaaagatctctgcaaaaacacagactacaacaacgaatgcatcgccgcgattctcccggatctacagaaacaagcagaaggagaag  19439700  Previous    Next  AGI:  At2g47330.1    Description:  DEAD/DEAH box helicase, putative. Identical to DEAD-box ATP-dependent RNA helicase 24 (RH24) [Arabidopsis Thaliana] (GB:O22907;GB:Q93Z98); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.2); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ55777.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40129.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74586.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, Range:  from: 19435967    to: 19438790    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g47340.1    Description:  invertase/pectin methylesterase inhibitor family protein. similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G02550.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74589.1); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) Range:  from: 19439238    to: 19440174    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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