Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      >>>>>>>GRF7 <-----------HVH21 ---------ZAT6 -NtERF2 ---MYB46(3)                                                 ------>ZmHOX2a(1) ---ERF1                                                     <---------------AtSPL3 ---DEAR3(2)                                   =====================HOX2a_HOX2a                 ----- ---RAP2.3(1)                                  ------>ZmHOX2a(2)                            <------ZmHOX2a(1) --DEAR3(1)                 <---------TOE2(3)<---------ARR14(2)                        <---------ANAC46 --RAP2.6(2)    ------>ZmHOX2a(1)            --------->ARR14(2)                        <---------ANAC58 --RAP2.3(2)--------->ARR14(2)               <---------ARR11(3)  ------->TEIL     <----------DOF2   < -LBD16     <---------ARR14(2)              <------ZmHOX2a(1)--------------->AtSPL8    <---------ANAC58   tagtgtcaggcccaaatccttcttggccttgaggtaactctcaacaggatcgtcatcgtcgtccttgtacctctctagtttctcctttggcttaggaggt  19438400                                                                                        ------->GAMYB                                                                                        --------->DEAR3(1)                                                                                 --------->ZAT2                                                                               <-----------RAV1(2)                                                                               <------NtERF2                                                                              --------->At4g35610                                                                              --------->LBD16                                                                             --------->DEAR3(1)                                                                     <------NtERF2     --------->MYB46(3)                                                                     --------->MYB46(3)--------->DEAR3(2)                                                                    ------>NtERF2--------->At4g35610                                                                   <---------ALFIN1  <---------ARR14(2)                     <---------GLK1(1)                          --------->ANAC58 <---------At4g35610               ------>ZmHOX2a(1)                                --------->ANAC58 <---------ZAT2          <---------At4g35610                                   --------->ANAC46----------->RAV1(1)     --------->GLK1(1)                                      -------->P       --------->ANAC46    <---------ARR14(2)    --------->ANAC46           ------>ZmHOX2a(2)       --------->RAP2.6(2)----- ---->ALFIN1 ----------->RAV1(2) ---------->DOF2 ------>ZmHOX2a(2) --------->DEAR3(1)--------->ARR14(2) ---------At4g35610  --------->GLK1(1)    --------->MYB52(1)------->TEIL<---------MYB52(1)     ------   ggagcagatttcatctcctggtgaattccctccataaaagcatctaatggatcgatctcatcaacctcgccaccgctagccgcagcagaaccgccttcct  19438500           <---------ZAT2                                                      <---------TGA1a           <---------At4g35610                                                 <---------O2           --------->At4g35610                                              ----------->HVH21        ------>ZmHOX2a(1)                                                <------NtERF2       --------->TOE2(3)                                                 ------>NtERF2 --------->ARR14(3)                                                   ------>NtERF2 --------->ARR11(3)                                  <---------HSFB2a(1) --------->LBD16 <---------ARR11(3)                            <------ZmHOX2a(2)      <---------ATERF1(1) --------->ARR14(2)                           <---------ARR11(3)      --------->LBD16 <---------ARR14(2)                           --------->ARR14(2)     --------->DEAR3(1)           --- <---------ARR14(3)                           --------->ARR11(3)     --------->ANAC46             <-- <-----------ARR10                        --------->YAB1<---------LBD16 --------->DEAR3(1)<---------ANAC46 ->ZmHOX2a(1)    ---------->ID1 <---------ATHB12------>ZmHOX2a(2)   <---------LBD16      <----------- --->TOE2(3)<---------GLK1(2)   <---------YAB1<---------ARR14(2)    --------->ATERF1(1)----------->HVH21   caatatcttcctcagcttcttcgttttccatgtaatcaatgttatcaagatcggcatcttcggagttgtctccgccgcgagacgagggagggacgtagag  19438600        <---------ANAC58        <---------ANAC58       <---------MYB46(3)      --------->ALFIN1                                              <---------ARR14(2)   <---------ANAC58                                                 --------->ARR14(2)   <---------DEAR3(1)         <---------STY1(2)                   --------->LBD16   <---------ANAC46 --------->ANAC58                     ------>ZmHOX2a(1)   <---------ANAC58 --------->ANAC58                 <---------ARR14(2) ------>O2      ------>ZmHOX2a(2)                    <---------ARR11(1) -------O2     <------ZmHOX2a(2)                     --------->GLK1(2) ------------TaNAC69(2)       --------->STY1(2)      --------->ARR14(2)   acgttgcggtgcttgagatcgctcgaaactgtagctagtttgccgattaatgccgaatccttccattccgaatttgcgattagacattcttcacttcgaa  19438700                                                                                 <---------AtMYB61                                                                                <---------MYB52(1)                                                                               --------->LBD16                                             <---------ATHB12                 --------->LBD16                 <----------DOF2    <-----------RAV1(1)                      <---------LBD16              <---------ARR11(3) --------->MYB52(1)                         <---------LBD16         <---------ZAT2        <----------DOF2  <----------ID1            <-----------GT1 *TSS         --------->ZAT2 ---------->DOF2    --------->WOX13(1)     <---------ANAC58    ----------->GT1         <---------At4g35610<---------ARR11(3)--------->YAB1      <---------ANAC46  <---------ANAC46         --------->At4g35610--------->ARR11(3)<---------ICU4      <---------ANAC58<---------MYB46(3)   tttcgcttctcagctagagcttttagcaaagagcttaactgttgccaattacgacgaaatttagggcttcgtgttttttcccggtggtatgtaaaatcgg  19438800                                         --------->DREB2C(2)                                         --------->DEAR3(1)                                        --------->DEAR3(2)                                     --------->ZAT14                                     <-------TEIL                                     <---------ZAT14                                    <-----------HVH21                               <---------LBD16                              <-----------GT1                             <-----------GT1                 ----------->GT1<---------LBD16                 --------->ANAC58 --------->LBD16                 --------->ANAC58--------->LBD16        ------------>CBF --------->AHL20(2)                                      <----------DOF2    ----------->GT1      <---------AHL20(2)------>MYB83                       <---------PCF2 <------ZmHOX2a(1)      <---------AHL20(2) ------>MYB46(1)                  <---------ZAT18   <------   agaggaaggaaacaatctcaagtaaaattattttcccggttcaccgacttgtcatcgtctatacatttgggcctctagtgggcctttgtttagcattttt  19438900                                                                                          -------->HAHB4                                                                                          --------->ATHB12                                                                                          --------->ATHB51                                                                                          <--------HAHB4                                      <---------ATHB12                                    <--------ATHB1                                  --------->MYB46(3)                                      <---------ICU4                                 ------>MYB46(1)                                          --------->YAB1                                 --------->ANAC46                                        --------->ICU4                                 ------>MYB83                                            <---------ATHB51                                 --------->ANAC58                                   <---------ANAC55(2)                               --------->AtMYB61                                    ----------->GT1                              --------->MYB46(3)           <----------DOF2   --------->YAB1      <---                            <-----------GT1             <-----------GT1 <---------TOE2(3)<---------YAB1 ---AHL20(2)       <---------DAG2--------->ANAC58 <---------ZAT6   --------->TOE2(3)--------->ANAC55(2)   tttttttttttctaagggtcaatttttgtaaaaccacccaattagtggattagtgttttttctttgtaacatttatggattataacatgtaataattaga  19439000                                                      ----------->GT1                       <---------YAB1            -------->HAHB4                     <--------HAHB4              --------->ATHB12                     <---------ICU4              --------->YAB1                            <---------                     --------->ATHB51         <--------HAHB4                              <---------DAG2            <---------AHL20(2)                --------->YAB1                            ------->TEIL           <---------ICU4                     <---------ICU4                          --------->ZAT18          --------->ICU4                     --------->AHL20(2)                       <---------ZAT18      --------->ARR11(3)         <-----------GT1<---------YAB1                      --------------->AtSPL8      <---------ARR11(3)<---------AHL20(2)   --------->ICU4                         --------->At4g35610 ---ZmHOX2a(2)      --------->ICU4         --------->YAB1 <---------AHL20(2)  --------->ICU4      <--   tcagataagataatttttatgcattattaatggttttactagtaagaataattatagggtttaattttgggttttgagcaaaaatgagcgcaccttttta  19439100                                                                    <------------CBF                                                                   --------->ATHB51                                                                   <---------ICU4                                                                   --------->YAB1                                                                   -------->HAHB4                                                                   <--------ATHB1      <---------AHL20(2)                                                                  --------->ICU4   <----------DOF2                                                       ----------->TBP        <---------ZAT18                                                       --------->AHL20(2)    <---------ANAC58                                                      --------->AHL20(1)     <---------ANAC58                                                      <---------AHL20(1)    --------------->AtSPL8                                                      <---------ARR11(3)<-----------RAV1(1)       ---                  <----------DOF2                <---------ATHB12 <---------ATHB51<---------DAG2  <--                  <---------DAG2                 ------------>CBF <---------YAB1------->TEIL     <--- -DOF2 --------->ANAC55(2)                 <-----------GT1        <---------AHL20(2)  --------->AHL20(2) ---------GT1 <-----------GT1           --------->AHL20(2)  ----------->GT1<---------ANAC46 ---------   aaacctctcatgtaatttagcttttccaaaattttgacacatttaaaaccagtcaatatatatagttaataattgtgttgtgtaccttttaaattcttaa  19439200                                                                                                   --                                                          --------->TOE2(3)                       <--                                                       <-----------GT1                           <---                                                      --------->YAB1                            <----        --------->AHL20(2)                           --------->ICU4                             <----        <---------AHL20(2)                           <---------ATHB12         ---------->ID1    <----       <---------MYB52(1)                          --------->WOX13(1)        <-------GAMYB   --------     ----------->GT1                            --------->ANAC58            --------->MYB52(2)------>NtERF2 ------>YAB1                 <---------TOE2(3)  --------->ANAC58          <---------MYB52(1) <------- -------ICU4<---------AHL20(2)                ---------->DOF2         <---------At5g28300   <-------- ------ATHB12        <----------DOF2       --------->AtLEC2------>ZmHOX2a(1)<---------MYB46(3)------- >TOE2(3)   --------->AHL20(2)           <---------------AGL15       <-----------GT1<-----------GT1<-   tcatcaccagttaattaaaaaaacttttgttaagaaaatggagccatacaaagcaattatcctcatcggagttactgtttgttgttatacattctccggc  19439300  Previous    Next  AGI:  At2g47330.1    Description:  DEAD/DEAH box helicase, putative. Identical to DEAD-box ATP-dependent RNA helicase 24 (RH24) [Arabidopsis Thaliana] (GB:O22907;GB:Q93Z98); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.2); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ55777.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40129.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74586.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, Range:  from: 19435967    to: 19438790    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g47340.1    Description:  invertase/pectin methylesterase inhibitor family protein. similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G02550.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74589.1); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) Range:  from: 19439238    to: 19440174    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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