Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <------MYB83                                                                       --------->At4g35610                                   --------->ALFIN1                    <---------At4g35610                         --------->ANAC55(2)           <---------GLK1(1)          <------MYB46(1)            ---------->DOF2        <---------ZAT6  --------->YAB1   <---------At4g35610       <-------TEIL    <-----------RAV1(2)  <---------YAB1          --------->At4g35610    <---------At4g35610   aacaacatgttcataaaaggtttcttcaggtaatgaagtgttgattctgtttattagaattcagtgattcagcagatgctaatttggtttctgagctctt  19434000                         --------->GLK1(2)                         <---------ARR11(3)                         --------->ARR11(3)                                 --------->MYB52(1)     --                        --------->RVE1(1)                               --------->At5g28300      <---                      --------->AHL20(2)<----------DOF2                ----------->GT1       --------                 --------->At5g28300  <---------HSFB2a(1)            <---------At4g35610     <-------                ----------->GT1       --------->HSFC1(2)             --------->At4g35610     <-------              <---------ZAT14         <---------HSFC1(2)          ---------->DOF2            --------              --------->At4g35610  <------ZmHOX2a(1)          --------->CCA1(2)              <-------              --------->ZAT14    <---------TOE2(3)            --------->At4g35610  ---------->DOF2<--   aaaaattgtcttaatctgcagtaaaaaaatctactgaggaagctttgtgtgatgagcaatggagagatgaaagctgtaaaacggagaaagaagcagattt  19434100     <---------MYB46(3)                                         --------->At5g28300 ------->ANAC55(2)                                             ----------->GT1 --------GT1                                           <---------YAB1                              <- ->ARR14(2)                         --------->YAB1 <---------AHL20(2)                            ---- --ARR14(2)                   ----------->GT1      --------->AHL20(1)              ----------->RAV1(2) --ARR11(3)                  ----------->GT1      <---------AHL20(2)               --------->At4g35610 ->ARR11(3)                ---------->DOF2        --------->AHL20(2)               <---------At4g35610 --GLK1(2)        --------->HSFB2a(2) <---------AHL20(2)    --------->MYB52(1)   <-----------GT1 ---- -------TOE2(3)<----------DOF2<----------ID1     <---------AHL20(2)    <-----------GT1   ------>ZmHOX2a(2)   tacgttttggttagaaacttttagaattggaaaggaaaaaataatcgaaaaattattttgataaacggtaaataaacctattttcacctgatccaaacca  19434200                                                                                         <---------AHL20(2)      --------->ANAC46                                                                  <---------AHL20(2)      --------->ANAC58                                                                  --------->AHL20(2)      --------->ANAC58                                                                  <---------AHL20(1)    --------->MYB52(1)                                                                  --------->AHL20(1)   <---------REM1(2)                                                                   --------->AHL20(2)   --------->ZAT14                                                               --------->LBD16   <---------ZAT14             --------->YAB1                                   <---------HSFB2a(2) --------->ANAC46 <---------AHL20(2)                                           <---------ANAC46 --------ALFIN1   --------->AHL20(2)                                           <---------LBD16 -->MYB46(1)     --------->AHL20(2)                            --------->TOE2(3)--------->HSFB2a(2) -->MYB83   --------->YAB1  --------->YAB1                  <---------AHL20(2)<---------LBD16   aacacttcacggtatcaaaattaatctctactataatcccatttcaaattcaattttgttatttacataaatccaaaattttcgggaaaattaatttcca  19434300               --------->DAG2              ---------->DOF2           <---------ZAT6         ----------->GT1         <---------ANAC46    <---------YAB1    --------->ICU4                                                                           --------   <---------TOE2(3)                       --------->AHL20(2)                             <----------  <---------ICU4                  <-----------GT1                                         --------->TOE2(3)  --------->YAB1----------->GT1 --------->YAB1                                            <---------- <---------ATHB51    --------->ICU4        <---------AHL20(2)                        <-------TEIL <---------ATHB12 --------->AHL20(2)--------->ANAC46                             ----------->GT1  <--   tcaataatgtttagtgaaaagtaattactgaaaattatactccatttaaaaaaaaaaactcgagtgcctctctgtgagtgagagagttacatcgtcagtc  19434400                         --------->CCA1(2)                         --------->ARR14(1)                        <---------GLK1(2)                        --------->ARR14(2)                        <---------ARR14(2)                        --------->ARR11(1)                --------->ANAC58                --------->ANAC58          --------->AHL20(2)      <---------------AGL15                                             >>>>>>>>>TBF1     ----------------->AGL3                                          >>>>>>>>>TBF1                 <- ->WOX13(1)---------->DOF2<-------TEIL                      --------->ANAC58                      <-- -TGA1--------------->AGL15                                 --------->ANAC58                  <------ -HVH21   <---------AHL20(2)       ---------->DOF2        <---------AtLEC2              <--------P<-- -------At4g35610     ----------->ARR10   *TSS <---------ATHB12   >>>>>>>>>TBF1  ---------->DOF2  <--   atcttcttccatttaaagacgaaatagattcgcagaacaaagaaatcaaatcactcacttgcaaggaagaagaagaagaagaccaaagaggttagtcttt  19434500                                                                                  ------->TEIL                                                                                  --------->ARR14(2)                                                                                  <---------ARR14(2)             --------->HSFB2a(2)                                                  --------->GLK1(2)             <---------HSFB2a(2)                                           <----------DOF2  <-------- --------WOX13(1)                                                  <---------ANAC46        <---------CCA1(2) -------ANAC58                              --------->MYB46(3)<-----------RAV1(1) <-----------ARR10 ----DOF2    --------->HSFC1(1)       <---------ANAC58     ------>ZmHOX2a(2)     <---------CCA1(2) -------AtLEC2   --------->ARR14(2)   <---------ANAC58<---------WOX13(1)<-----------GT1<-----------HVH21 -------ANAC58--------->LBD16   <----------DOF2  <---------LBD16 <---------ANAC46<---------GLK1(2) <-   gcttgattttagtttccagaattcgattttgagtctttgtgcttgaacaactctggattgatctatgttgtgtttttcttttcgaatctcgtcaaatctt  19434600                                  --------->ARR11(3)                                  <---------ARR11(3)                               --------->CCA1(2)                              --------->ARR11(3)                              <---------ARR11(3)                          ---------->DOF2                                     --------->At4g35610                    <------ZmHOX2a(2)                                      <---------At4g35610                   <---------AGP1<---------CCA1(2)                      <---------At4g35610         < ---ARR10          <---------ARR11(3)        --------->HSFB2a(2)        --------->At4g35610         < ---------DOF2  --------->HSFB2a(2)         ------>ZmHOX2a(2)       --------->GLK1(2)  <----------DOF2   actttgttcgtcccatgtctagatcagtgaaagatatatctctcgatctcgaattccatatagatttgatattctgcagaagctaaatgcttttgttttg  19434700          <----------DOF2         <---------ANAC58                                                              <------ZmHOX2a(2)         <---------ANAC58                                                             <-----------ARR10 --------->GLK1(2)                       <------MYB46(1)                              --------->ARR11(3) ------->TEIL                            <------MYB83                                 <---------ARR11(3) <---------ARR14(2)                  --------->ATHB12                            <---------ANAC46 <-----------ARR10                  <---------YAB1                          --------->MYB52(1) <---------ARR11(1)          <---------WOX13(1)                          --------->ANAC58        ---- --------->ARR14(2)     --------->ANAC55(2)                              <---------ANAC55(2)     ---- ---------ARR14(1)      <---------ANAC55(2)       <-----------GT1        --------->ANAC58    -------- ---------GLK1(2)       --------->YAB1 <---------WOX13(1)                --------->ANAC55(2) --------   ccgaatctgatgcttttgtgtttgattcgtaattgattttgattggtcttcttaactgttcattgtcttcagagtaagtaatggcgaagatcaaacctca  19434800                                                                                           <---------                                                     ------>MYB83                          ----------         --------->At4g35610                       ------->GAMYB                           ==========         <---------At4g35610                 --------->YAB1                          <---------ANAC58  <-----------RAV1(1)    ---------->DOF2   --------->ANAC58                          <---------ANAC46 ----->ANAC58         >>>>>>>>>TBF1        --------->ANAC58     <-----------GT1      <---------ANAC58 ----->ANAC58--------->ANAC58           --------->ARR14(2)<-----------TGA1      ===================== ->TOE1(3)   --------->ANAC58        <---------ANAC46------>MYB46(1)            <----------DOF2------ ->TOE2(3) ---------->DOF2   <------ZmHOX2a(1)    --------->MYB46(3) <----------DOF2 <---------AtLEC2   agcattgttgcagcaaagcaagaagaagaaaggaccgtctcggataagcataaccaacatcgtcatttacactttggctgtgcttttgcttgtctttgtt  19434900  Previous    Next  AGI:  At2g47310.1    Description:  flowering time control protein-related / FCA gamma-related. similar to FCA, RNA binding [Arabidopsis thaliana] (TAIR:AT4G16280.2); similar to FCA, RNA binding [Arabidopsis thaliana] (TAIR:AT4G16280.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO40139.1); contains InterPro domain Ribonucleoprotein, BRUNO-like (InterPro:IPR015903); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) Range:  from: 19430754    to: 19434347    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g47320.1    Description:  peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein. Identical to Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial precursor (CYP21-3) [Arabidopsis Thaliana] (GB:Q94A16;GB:O22906); similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT3G66654.3); similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT3G66654.1); similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT3G66654.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO44909.1); contain Range:  from: 19434442    to: 19436003    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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