Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        --------->ANAC58                      --------->ANAC46                      --------->ANAC58                                                     <---------ANAC58                      <---------ANAC55(2)                                            --------->DAG2     ---------->DOF2  ----------->GT1                                       --------->ANAC46<-------- ---------->DOF2      --------->ANAC55(1)                               <---------REM1(2)  <---------ANAC58 ------>DOF2          --------->ANAC55(2)       --------->At4g35610  <<<<<<<<<TBF1  ---------->DOF2   aaagaaagaaagaacaatatagaaacgtaactcttcttctccttgtaatttgctcacaacaaaacctcttcttcttcacagccacttaaagtggctttcc  19430400                                                                              --------->ARR14(2)                                                      ---------->DOF2         <---------ARR14(2)                                                    <---------YAB1        ----------------->AG                                                    <---------HSFB2a(2)   ----------------->AGL1                                                 --------->GLK1(2)        ===========================                    <---------WOX13(1)      =====================HOX2a_HOX2a ------>MYB46(1)                  --------->ATHB12          <------ZmHOX2a(2)<----------DOF2 ------>MYB83                 <---------YAB1           ------->GAMYB   <------ZmHOX2a(1)<---------MYB59 --DOF2   <---------YAB1         --------->YAB1 <---------GLK1(2)       <-----------GT1        ------   acttgtcttgatatcatttctgattgctccttgaatcatcttaacgatcaaattctgaaaggactttcacttgtttaccaaattcgaacaagactataaa  19430500                         --------->DAG2                   --------------->AGL15                     --------->ANAC58                  --------->ANAC55(2)                        --------->ANAC46                  ----------------->AGL1                     --------->ANAC58                  <-----------------AGL1             <---------ARR14(2)                 -------->P                          --------->GLK1(2)                <-----------GT1                      --------->ARR14(2)               <---------ANAC58              <---------ANAC58           --------->LBD16   ---------->DOF2            <---------ANAC58           <----------DOF2              --------->ANAC46--------->TOE1(2)           <---------YAB1 ==================================MADS_MADS        <---------GLK1(2)              <---------GLK1(2) --->WOX13(1) <---------ANAC58        <---------At5g28300------>ZmHOX2a(1)    ------->TEIL         --   tcaaactgtctctctttcttacctgataagggggatgagttaccgcaacttgcagaatcctacaagccagtagaaaaatgaaactgattcttgctacaat  19430600                                                               --------->AHL20(2)                                                               <---------AHL20(2)                                                              <---------AHL20(2)                                                          <---------ATHB51                                                   ----------->GT1                                                 <---------WOX13(1)                                              <---------AHL20(2)                                              <---------YAB1  --------->YAB1                                            <----------DOF2<---------ICU4                                            --------->TOE2(3) --------->AHL20(2)          <---------ANAC58                                            <---------------AGL15                         <---------ANAC58                               <---------------AGL15      --------->AHL20(2)              <---------ANAC46        <-------TEIL           --------------->AGL15      --------->ICU4                  -----------       <<<<<<<<<<<<<<<<<LFY    ==============================MADS_MADS     --------->ARR11(3)    <---------ATHB12    <--------HAHB4      --------------->AGL15          <---------ARR11(3)   ------>MYB46(1)      --------->YAB1--------->ANAC58    <---------AHL20(2)             <------NtERF2   ------>MYB83         <---------ICU4--------->ANAC58   <---------AHL20(1)--------->ARR14(2) <---------MYB59       <---------ATHB12    <-----------------AGL3          <---------ARR14(2) ------- ----->TEIL       <-----------GT1     --------->ANAC46  --------->YAB1------------>CBF --------->ALFIN1   gaaccaaacatacattggtattacaatcattttctaatacaagaaactttaattggtaaaataattaaaatcgccaatatctgagaacggtgtcgtttaa  19430700                                                                                    <------NtERF2                                                                                   --------->LBD16                                                                                  <---------ANAC46                                                                                  --------->DEAR3(1)                                                                                 --------->RAP2.3(1)                                                                                 --------->ATERF1(1)                                                                                 <------NtERF2                                                                                 <---------LBD16                                                                                <---------ERF1                                                                                <---------RAP2.3(1)                                                                                <---------RRTF1(1)                                           --------->ANAC58                     <---------ATERF1(1)                                           --------->ANAC58                     ------>NtERF2                                        --------->ARR14(2)                      <---------RAP2.6(1)                                     <---------HSFB2a(2)                       <---------DEAR3(1)                                    <---------ANAC55(2)                        --------->DEAR3(1)           <---------ALFIN1         <---------ANAC46                          --------->ATERF1(1)          --------->MYB46(3)       --------->SPL7                             --------->RRTF1(1)         --------->SPL7          <---------SPL7                               --------->RAP2.6(1)        ------>MYB46(1)          <---------MYB52(1)                           --------->ERF1        ------>MYB83            --------->LBD16                               --------->RAP2.3(1)      <---------MYB59          <---------------AtSPL3                        <---------ATERF1(1)      ------->GAMYB           <---------LBD16                                <---------RAP2.3(1)     --------------->AtSPL3   ----------------->AGL1                        --------->ATERF1(2)   --------->MYB52(1)       --------->ARR14(2)        *TSS                 --------->DEAR3(2) ------- >GT1--------------->AtSPL8 <---------ARR14(2)    <------ZmHOX2a(1)       --------->MYB52(1) <------- -->AHL20(2)             ----------->TBP<---------ARR14(2)   <----------DOF2<---------ATERF1(2)  <---   atagttaaccgaaccacatcgaagtttataaatccggtacgggaaacgcctaggactataactctttctctccctctaccggcgccggagaaattcccga  19430800                                                                             --------->ANAC58                                                                       --------->RAP2.3(3)        ---                                                                      <------NtERF2              ----                                                                     ------>NtERF2               <---                                                                 <-----------------------TaNAC69(2)                                                                --------->CCA1(2)     <-----------RAV1(1)                                                      --------->HSFB2a(2)    --------->ANAC58   -----                                                      <---------HSFB2a(2)<---------ALFIN1     <------ -->LBD16                                          --------->GLK1(2)--------->ANAC46----------->RAV1(2) --HSFB2a(2)    <---------At4g35610              <------ZmHOX2a(1)  --------->ANAC58<---------LBD16 ---ZmHOX2a(2)  --------->At4g35610<-----------GT1<---------GLK1(2) --------->ANAC58=================   tcaacacaatctcgagacaactgagacgagttcaaattatcgactcaaataggattctagatggagagacgcgccccaaacgcattccctggtgctccac  19430900                                                                     --------->SPL7                                                                   <---------SPL7                                                                   ------>NtERF2                                                                   <------NtERF2                                                                  --------->DEAR3(1)                                                                  --------->RAP2.3(2)                                                                  --------->RAP2.6(2)                                                                  --------->RRTF1(2)                                                                 <------NtERF2                                                                 --------->ATERF1(1)                                                                 --------->RAP2.3(1)                                                                 --------->ORA47(2)                                                                <---------ATERF1(1)                                                                --------->ABI4(1)                                                               --------->RAP2.3(3)                                                               <---------ALFIN1                                                               --------->RRTF1(2)                                                               --------->RRTF1(3)                                                               --------->RAP2.3(2)                                                               --------->ANAC46                                                               --------->RAP2.6(2)                                                               <---------DEAR3(1)                                                               --------->DEAR3(1)                                                               --------->ATERF1(2)                                                               <---------ATERF1(2)                                                              --------->ATERF1(1)                                                              <------NtERF2                                                              --------->DEAR4(2)                                                              --------->ERF1                                                              --------->RAP2.6(1)                                                              --------->ORA47(2)                                                              --------->RAP2.3(1)                                                              --------->RRTF1(1)                                                             <---------DREB2C(1)                                                             <---------ATERF1(1)                                                             <---------DEAR4(2)                                                             <---------At4g35610                                                             <---------RAP2.3(1)                                                             ------>NtERF2                                                             --------->ABI4(1)                                                            --------->RRTF1(2)                                                            <---------ALFIN1                                                            --------->ANAC46                                                            --------->RRTF1(3)                                                            --------->RAP2.3(3)                                                            --------->ATERF1(2)                                                            --------->RAP2.3(2)                                                            --------->DEAR3(1)                                                            <---------DEAR3(1)                                                            <---------ATERF1(2)                                                            --------->RAP2.6(2)                                                           --------->RRTF1(1)                                                           <------NtERF2                                                           --------->ATERF1(1)                                                           --------->RAP2.6(1)                                                           --------->DEAR4(2)                                                           --------->RAP2.3(1)                                                           --------->ORA47(2)                                                           --------->ERF1                                                          ------>NtERF2                                                          --------->ABI4(1)                                                          <---------ATERF1(1)                                                          <---------At4g35610                                                          <---------DREB2C(1)                                                          --------->At4g35610                                                          <---------RAP2.3(1)                                                          <---------DEAR4(2)                                                         <---------ATERF1(2)                                                         <---------DEAR3(1)                                                         <---------ALFIN1                                                         --------->ATERF1(2)                                                         --------->DEAR3(1)                                                         --------->RAP2.3(3)                                                         --------->RAP2.6(2)                                                         --------->RRTF1(3)                                                         --------->RRTF1(2)                                                         --------->RAP2.3(2)                                                         --------->ANAC46                                                        --------->ORA47(2)                                                        --------->DEAR4(2)                                                        --------->ERF1  ----------->RAV1(1)                                                        --------->ATERF1(1)                                                        --------->RAP2.6(1)                                                        --------->RRTF1(1)            <-------GAMYB                                                        --------->RAP2.3(1)        ------>NtERF2                                                       --------->LBD16 <---------ALFIN1<---------MYB52(1)                                         --------->YAB1<---------ATERF1(1)  <---------CCA1(2)    <---------ZAT18                  ------>ZmHOX2a(1) --------->At4g35610--------->AtMYB61   --------->ARR14(2)           ------->GAMYB         ------->GAMYB--------->ABI4(1) <---------ANAC46 -------->RAV1(1)             -------->P <---------ICU4------>NtERF2<---------ALFIN1 <---------MYB46(3) ----->AtMYB61               ------->GAMYB            --------->ANAC46--------->MYB46(3) ------ALFIN1               <---------MYB55(2)       --------->MYB46(3)--------->DEAR3(1) ---->MYB46(3)           --------->REM1(1)          <---------At4g35610--------->AtMYB61        ----- ---ALFIN1    --------->YAB1<---------MYB111(2)  <-------TEIL--------->At4g35610  --------->DEAR3(1) =========RAV<---------YAB1 --------->MYB46(3) <---------GLK1(2)------>NtERF2   <---------At4g35610   caccagttccctactatcataacaactacaacaaccctcctcatcatcagattcatccgccgccgccgccgcaccaccatatcgctgccgttggattcca  19431000                                                                         <-------GAMYB                                                                        =============================                                                            --------->At4g35610                                                           ----------->RAV1(1)                                                           ------->GAMYB------>ZmHOX2a(2)          --                                                     ------>NtERF2      <---------MYB46(3)        ---                                         ------->GAMYB  --------->MYB52(1)                        ---                                        --------->MYB46(3)--------->MYB46(3)                    <----                                       -------->P <---------LBD16      <---------YAB1           -----                ----------->RAV1(1)   --------->MYB52(1)----------->RAV1(1)--------->WRKY38(1) <-----      --------->LBD16               <---------ATHB12------>NtERF2     <---------ARR11(3)   ------->GAMYB     --------->ANAC46   <------ZmHOX2a(2)--------->RAP2.6(2)<---------At4g35610         <-----------GT1 ---->LBD16 <----------ID1        --------->WOX13(1)--------->LBD16 <---------YAB1   --------->YAB1--   caaatacccccaaaacgacaacagggatcagcgtttcaatcaaccgcattactccggccaacagcagaacatgatcgttgatcagagtaataacgctcct  19431100          --------->DEAR3(1)        --------->LBD16        <---------At4g35610    <---------At4g35610        ------>NtERF2          --------->At4g35610      <---------LBD16       <---------ZAT2    <---------ARR14(2)      --------->ZAT2    --------->ARR14(2)      <------NtERF2   <---------MYB52(1)       <---------At4g35610 ==HOX2a_HOX2a              --------->At4g35610                                                 <---- ------->LBD16           <------NtERF2                                                          ----- ------>ANAC46         --------->ALFIN1                                                         ----- ------>DEAR3(1)    <---------ANAC46                --------->WOX13(1)                       <------- -----ATERF1(1)  ------>ZmHOX2a(1)         --------->CCA1(2) <-----------RAV1(2)             -------- ->ZmHOX2a(1)   <---------ANAC58    <---------TOE1(3)    --------->At4g35610                 <------- ----ALFIN1------>NtERF2------>NtERF2 <------ZmHOX2a(1)  <---------At4g35610             --------->At4g35610 ---->NtERF2    <---------ANAC58    <---------TOE2(3) <---------ATHB12                   <---------At4g35610   ccgccgtttccgccgagtccttgcggtggcagcagcttaaggaagagacggtctcaatcagctacaggttatctccaattttgaatttttctgctacgta  19431200        --------->ALFIN1     --------->DAG2   ---------->DOF2 --------->ANAC46                                                                               <---- -----ARR14(2)                              <---------MYB52(1)                                  ----- -->TEIL<---------REM1(1)      <---------MYB52(1)                                              <----- ---->ARR14(2)          <-----------GT1   <---------ANAC58                                     <----- --ANAC55(2)         <----------DOF2      <---------ANAC58                                     <----- ->ANAC55(2)       ---------->ID1      <----------DOF2     --------->ARR11(3)             <---------- --ANAC46      <----------DOF2 <----------DOF2             <---------ARR11(3)      ----------->GT1 <-   tccacaaaaggtgtagactttgtctttaactccctttggtactttcgtttgtatacatgaagataatgctgatggtagtattgccaagttatatgttgcg  19431300  Previous    Next  AGI:  At2g47310.1    Description:  flowering time control protein-related / FCA gamma-related. similar to FCA, RNA binding [Arabidopsis thaliana] (TAIR:AT4G16280.2); similar to FCA, RNA binding [Arabidopsis thaliana] (TAIR:AT4G16280.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO40139.1); contains InterPro domain Ribonucleoprotein, BRUNO-like (InterPro:IPR015903); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) Range:  from: 19430754    to: 19434347    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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