Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      <---------ATHB12                   -------->P                   ------>MYB83                   ------>MYB46(1)                 ------->GAMYB                 --------->AtMYB61                 --------->MYB46(3)                 <---------MYB111(1)                --------->DEAR3(2)                <---------MYB55(2)                --------->MYB46(3)                     --------->ANAC46                <---------ATHB12                     --------->AtMYB61                <---------MYB52(2)                   ----------->RAV1(1)               --------->ANAC58                      <---------ALFIN1               ------>MYB46(1)                      --------->MYB46(3)               --------->ANAC46                    ------>NtERF2               --------->ANAC58                   --------->RAP2.6(2)            --------->MYB46(3)                   --------->MYB46(3)    --------------->AtSPL8                      <---------At4g35610 <---------ZAT2-------->P                       --------->At4g35610 --------->ZAT2------>MYB83     <---------DAG2 --------->ANAC46                               ------- >ZAT6  <-------TEIL--------->MYB46(3)      <-----------HVH21                 --------->GLK1(2)   cgaggctgggtacatccaaccaaccatttccttcccttatcggagttgtcagccaccacagcatctaatacaaactgtggaatctgtagaatacaatgaa  19409700                                                             --------->ZAT14                    --------->ZAT6                     <-----------------------TaNAC69(2)      <-----               --------->ANAC46                        --------->MYB52(1)             --------->At1g77200          <------ZmHOX2a(2)                            -------->P   <-----------GT1   ----------->HVH21   <-----------RAV1(1)  <---------ICU4              <---------At4g35610               --------->DEAR3(1)   <---------YAB1--------->ZAT14                    --------->At4g35610--------->ZAT6--------->DEAR3(2) -->AHL20(2) --------->ZAT6                ---------->DOF2   <---------ZAT14       <-----------GT1   atgttatgttggatcacactaaacactaattccaaaatcgaaattgaaagcttgagctacctgtgtagttttaccactaccagtttcaccgacgagtatg  19409800                                                                        --------->LBD16                                                                ------>ZmHOX2a(1)                                                         ==============HOX2a_HOX2a                                                         --------->GLK1(1)                                                         <---------GLK1(1)                                                         <------ZmHOX2a(2)                                                        <---------AGP1 --------->HSFB2a(2)                                                        <-----------ARR10                                                        --------->ARR14(3)                                                        <---------ARR14(3)    <---------HSFB2a(2)                                                        --------->ARR11(3) --------->ARR14(2)                                                        <---------ARR11(3) --------->GLK1(2)                                                        --------->ARR14(2)--------->ARR14(2)                                       <---------HSFB2a(2)------>ZmHOX2a(2)<---------ARR14(2)                                       --------->HSFB2a(2)=============HOX2a_HOX2a    --------->ATHB12                  <---------LBD16   <---------ARR14(2)<---------GLK1(2)   <---------YAB1                  <----------DOF2    ----------->ARR10<---------HSFB2a(2) ----YAB1 <---------ZAT6  ---------->DOF2      --------->MYB52(1)     <---------LBD16          <-----   agagtttgattagagttcaaagtattgagaaagtcatctttctggagccaaacgggaagatctctcctcttctccagaatctcgaaatacctctgagaat  19409900                                                  --------->LBD16                                                  <------NtERF2                                                  ------>NtERF2                                                 --------->RAP2.3(3)                                                 --------->RRTF1(2)                                                 --------->ANAC46                                                 --------->RAP2.3(2)                                                 --------->RAP2.6(2)                                                 --------->RRTF1(3)                                                 --------->DEAR3(1)                                                --------->ERF1                                                --------->RAP2.3(1)                                                <------NtERF2                                                --------->RRTF1(1)                                                --------->ATERF1(1)                                               ------>NtERF2                                               --------->ABI4(1)                                               <---------ATERF1(1)                                              --------->DEAR3(1)                                              --------->ATERF1(2)                                              --------->RAP2.6(2)                                              --------->RAP2.3(3)                                              --------->RRTF1(2)                                              <---------ATERF1(2)                                              --------->ANAC46                                              <---------ALFIN1                                              --------->RAP2.3(2)                                              <---------DEAR3(1)                                              --------->RRTF1(3)                                             <------NtERF2                                             --------->RAP2.6(1)                                             --------->DEAR4(2)                                             --------->ORA47(2)                                             --------->ATERF1(1)                                             --------->RAP2.3(1)                                            <---------RAP2.3(1)                                            --------->At4g35610                                            --------->DREB2C(1)                                            <---------DEAR4(2)                                            <---------DREB2C(1)                                            <---------ATERF1(1)                                           --------->ANAC46                                           --------->RAP2.6(2)                                           ------->GAMYB                                           --------->DEAR3(1)                                           <---------ATERF1(2)                                           --------->ATERF1(2)                                           --------->RAP2.3(3)                                           --------->RAP2.3(2)                                          --------->MYB46(3)                                          --------->ERF1                                          --------->RAP2.3(1)                                          <---------MYB55(2)                                          --------->DEAR3(2)                                          --------->ATERF1(1)                                         <---------At4g35610                                         ------>MYB83                                         --------->At4g35610                                       --                                         ------>MYB46(1)                                          <--                                         --------->ZAT2                                           ---                                         <---------ATERF1(1)                                      <--                                        --------->ANAC46                                         <---                                        --------->MYB55(1)                                       ----                                       --------->AtMYB61                                         <---                                       <---------MYB55(2)                                        ----                                       <---------ALFIN1                                          ----               <---------MYB46(3)      --------->MYB46(3)                                        <---          ----------------->AGL3    <---------ALFIN1                     <------MYB83            <---        <---------MYB52(1)          --------->AtMYB61--------->ANAC58    <------MYB46(1)        <----      <---------ANAC58       <---------ANAC58--------->RRTF1(1)         <---------AtMYB61      <-----      <---------ANAC58       <---------ANAC58--------->ERF1          --------->ARR14(2)        ------  <----------DOF2         <---------WOX13(1)------>NtERF2      --------->ATHB12      --------->ANAC46 ----KAN4(2) <---------MYB52(1)    --------->MYB46(3)--------->ANAC58<---------ARR14(2)---------->DOF2   aagcctttccgttccatttgttgatcagattgcttccaccaccagccgccgccgcaagtccgagaccattggatttggtgttcttcgacgaaagagaagg  19410000   --------->HSFB2a(2)   --------->TOE2(3)   <---------HSFB2a(2) ---->ZmHOX2a(2) ----ZmHOX2a(2) ------>HSFB2a(1) -------HSFB2a(1)                                                                                   < ------ARR14(3)               <---------MYB52(1)                                                    - ----->ARR14(2)             <---------ANAC58                                                        < --------ARR10              <---------ANAC58                                                       <- ----->ARR14(3)           ------>MYB46(1)                                                          -- ----->ARR11(3)           ------>MYB83                                                          ----- ------ARR11(3)        --------->HSFB2a(1)                                                   -------- ------ARR14(2)       -------->P                      --------->MYB46(3)                   --------->YAB1 --ZmHOX2a(1)        <-----------GT1      ------->TEIL<---------MYB52(2)               <---------WRKY38(1) ----HSFC1(2)      <---------MYB52(2)   --------->ZAT14                      <---------ARR11(3)------ --->HSFC1(2)  --------->MYB46(3)     --------------->AtSPL8                 --------->ARR11(3)------   atcttccataacatcgaacaaactaaccttccgttttctctctgtacccattacgaacgaacaaaacgagagacagatagattttaggctcaacgataag  19410100     <------NtERF2    ------>NtERF2<---------TOE2(3)   <---------ANAC46  <------NtERF2  <---------TOE1(3) <---------DEAR4(2) <---------RAP2.3(1)                                                                            ----- <---------ATERF1(1)                                                                   ------>NtERF2 ---------RAP2.3(2)                                                                    <---------RAP2.6(3) -------->DEAR3(1)                                                                     --------->ORA47(1) ---------DEAR3(1)                                                                    ----------->HVH21 --------At4g35610                                                                   --------->DEAR3(2) ------->At4g35610               ---------->ID1                                      --------->ATERF1(1) ---->At4g35610 <-----------RAV1(2)                                                 --------->PCF5 -->DOF2 <------ZmHOX2a(1)  <----------DOF2                         <---------MYB52(1)--------->DEAR3(1) --->ANAC58   *TSS    <-----------GT1<----------DOF2               <-------GAMYB    <---------PCF2  - --->ANAC58 <----------DOF2<---------DAG2                 <------NtERF2            ----------->TCP11(1)   cagcggcgcgaggacttttcaggttaaccccttttgtctcttttgatatttgttttaggcaccaaggcccgttaagttcccttgtgggccgacctatgta  19410200                           <-----------GT1                      <---------AHL20(2)                     <---------ARR11(3)                     --------->ARR11(3)                       ----------->GT1                       -                     --------->AHL20(1)                      --------->DAG2          --------->ATHB12                     <---------AHL20(1)               <---------MYB46(3)            --------->ICU4 -- -->TEIL             <---------AHL20(2)               ----------->GT1 --------->ZAT6<---------YAB1 <- --------->DOF2      --------->AHL20(2)     <----------DOF2 ---------->DOF2      <---------YAB1------   tgtaaagcccatgtttctctgaatatatttttctgactctctcattctttttttgtttgttaaaaagtaaaaacactagcattttgattattgatcacaa  19410300                                       ----------->GT1                                      <---------------AtSPL8                                   <---------ARR14(2) ------>TEIL                --------->ANAC58                           <---------ALFIN1 ------->ARR14(2)           --------->ANAC58     ---------->DOF2    --------->REM1(1)              -- --------GLK1(2)     <----------DOF2--------->CCA1(2)<----------ID1 --------->ANAC46   ----------->RAV1(1) ---->DOF2     ------>ZmHOX2a(1)   --------->ARR14(2)----------->GT1--------->ZAT6    <----------ID1-   agaacctctccagcctcctcttactttgacaaggatggatatggtacaatagaaagagaaaaaaacacttacaccacttaaacaaaatacaacaaaaaaa  19410400                                       <---------ICU4           --------->ANAC58       ------>ZmHOX2a(1)           --------->ANAC46      --------->TOE2(3)           --------->ANAC58      --------->TOE1(3)        ----------->HVH21     <---------ARR14(2)                                                  ---        ----------->TGA1      --------->ARR14(2)                                                  <--    <---------ZAT14          <---------GLK1(1)                                                <------    --------->ZAT14          --------->GLK1(1)                                               ------>ZmHOX2a(2)    --------->ZAT18      <---------TOE2(3)                         ---------->DOF2    --------->GLK1(2) -------->DOF2           <---------TOE1(3)                   --------->ZAT18          --------->ARR14(2) -------->DAG2          --------->MYB52(1)                   <-------TEIL             <---------ARR14(2)   aaaaagtggactgacgcaaatagaattaagggtatccttaagcattgcatttgcaatacgaagtgcatagaaagcatttgagactgcgaatttgatcgtc  19410500                                                                  <<<<<<<<<TBF1                                                    --------->TOE2(3)            <-----------GT1                       --------->ARR11(3) ------>ANAC55(2)                                 <---------ARR11(3) -------ANAC55(2)                  <---------bZIP60(1)   <---------WOX13(1)          ---------->ID1 -----HVH21--------->AHL20(2)      --------->bZIP60(1) --------->ATHB12<----------DOF2     <---------YAB1   acttaattcgaaatttactaccccaaggttgagtttgacatcagggtttgaataccttcattgacttcttcttctttagtagctattgtcgttttgattc  19410600  Previous    Next  AGI:  At2g47250.1    Description:  RNA helicase, putative. Identical to Probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis Thaliana] (GB:O22899); similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G62310.1); similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733), ATP-dependent RNA helicase [Arabidopsis thaliana] (TAIR:AT1G32490.1); similar to Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95605.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64445.1); similar to predicted Range:  from: 19406764    to: 19410114    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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