Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    --------->DOF5.7(2)  --------->At5g28300 ---------ANAC46 ------->RAP2.6(3) ------>MYB52(1) ------->HVH21 ------->TGA1 ---MYC3 -->MYC3 ----ANAC55(2) --->ANAC46 --->ANAC55(2)                                                                                <------ ----bZIP60(1)                                       --------->ANAC58                         <------ ----O2                                              --------->ANAC55(2)                     <------- ----bZIP60(2)                                       --------->ANAC46                    <---------ARR11(3) --->O2                                              <---------ANAC55(2)                 --------->ARR11(3) --->TGA1a                                         --------->CCA1(2)                 ---------->DOF2 --->bZIP60(1)                                    <---------ARR14(2)                --------->AHL20(2) ----TGA1a               <---------CCA1(2)        --------->ARR14(2)               <XXXXXXXXXXXXXXXXX ------DYT1              --------->GLK1(1)<---------TOE2(3)                   <-----------HVH21     - ----->DYT1 --------->MYB52(1)        <----------DOF2--------->ANAC58        ----------->GT1 <-------   tgacggtaactggctaactgcaatagtatatccaaaacaactttaagaaatggatacgaaatgttttagttttgggaaaatgtcaaataaagatttcgtc  19399200        --------->WOX13(1)      <---------ATHB12    --------->WOX13(1)                                            --------->CCA1(2)               --- -----TGA1                                                     --------->ANAC58          --------->AHL20(2) -----HVH21                                                    --------->ANAC58         --------->AHL20(2) --ANAC58                <----------DOF2                      --------->SPL7            <---------AHL20(2) XXXMIR1886.2   --------->ZAT14       --------->ARR11(3)  <---------------AtSPL8      --------->YAB1 -------->GLK1(1)    <---------ZAT18--------->ICU4        <---------------AtSPL3 ----------->GT1  <-- --ANAC58       <---------ZAT14--------->YAB1      <---------GLK1(2)            ----------->GT1   <--   acaaatccatcaatccagtatagaacacttttatcaaaatgattttgcaaattgattcttagagtacgatacaagttgcaaactggaaaaataattttgc  19399300                    --------->ATHB12                    -------->HAHB4                   <---------ATHB12                <---------AHL20(2)                --------->AHL20(2)               <---------YAB1             --------->YAB1            <---------YAB1          --------->YAB1         --------->AHL20(2)     --------->MYB46(3)                                                             --------->ANAC55(2)   ----------->RAV1(1)                                               --------->CCA1(2)              - ------>At4g35610  <---------YAB1                           <---------REM1(1)     <-----------GT1 <-- -----GAMYB --------->ICU4                  --------->AHL20(2)      <---------ARR11(3)   ----------->GT1 -------At4g35610  --------->ICU4 <---------GLK1(2)<------ZmHOX2a(1)--------->ARR11(3)   <---------YAB1   agttgcaacaaataataataaatgattgtgcaaattgattctcaaattaagtaggaaacaagttgtagtagatatagactgtttttacatgatgttaatt  19399400                                                     --------->MYB52(1)                                                    <---------AHL20(2)                                                    --------->AHL20(2)                                                   <---------ATHB12                                                 --------->WOX13(1)                                                 --------------->AGL15                                                 <---------------AGL15                                        --------->ANAC55(2)                                        --------->ANAC58                       --------->HSFB2a(2)        --------->ATHB12                <---------ANAC55(2)                    <---------HSFB2a(2)       <-------TEIL                     ----------->GT1                   --------->ARR11(3)    <------ZmHOX2a(1)                   --------->ANAC58          <---------MYB46(3)                - --------->DOF2 --------->AtLEC2      <------ZmHOX2a(1) ----------->GT1   <---------ARR11(3)       <- -------HSFB2a(2)             <---------YAB1    <-----------------AGL3    ------------------------>ANAC81   ccaaaaggattcattgccatacaaatggttttctcatagaggacgtaatatcaattaatggaaaatagtagttgaagatttatagaagaaaaaaaaaact  19399500                                                                                                <----                                                                                                <----                                                                                       ------>MYB46(1)                                                                                     ------->GAMYB                                                                                     --------->AtMYB61                               <------ZmHOX2a(2)                                    --------->MYB46(3)                       <---------AHL20(1)                                           <---------MYB55(2)                       --------->ARR11(3)                                          --------->ANAC58                      <---------AHL20(2)                                           --------->ANAC58                  --------->AHL20(2)                                      <---------ANAC46      -----         --------->ZAT6--------->AHL20(1)                                 <---------ANAC58   --------    --------->ANAC58--------->AHL20(2)                                    <---------ANAC58   --------    --------->ANAC58<---------AHL20(2)       ----------->GT1         <---------O2  -------->P<------- --------->LBD16  <---------AHL20(2)     ---------->DOF2            <---------ARR14(2) ------>MYB83<- -------->ANAC46--------->AHL20(2)    --------->AHL20(2)         --------->ANAC46 --------->WOX13(1)- --------LBD16  <---------AHL20(2)  --------->YAB1    ---------->DOF2----------->RAV1(2)    <--------   ttccgcaaacaacactatatatatatatattggatcaaaaataaaaagagttaaatgaaagaaatacacagacctggcctgtatcaaccaactcatatat  19399600        --------->MYB46(3)  ----------->TBP <---------AHL20(2) -----YAB1                                                                 <---------ICU4 -----AHL20(2)                                                             <---------AHL20(2) ---->AHL20(2)           --------->At4g35610                               --------->ATHB51 ->AHL20(2)              <---------ZAT2                                    --------->AHL20(2) ->AHL20(1) --------->MYB46(3)          --------->ARR11(3)                <---------AHL20(2) --AHL20(1)------>MYB46(1)    ------>ZmHOX2a(1)     <----------DOF2       <---------AHL20(1) --------YAB1  <-------TEIL *TSS        <-----------GT1                   --------->AHL20(2) -------- -------->AHL20(2)       <---------At4g35610  <----------DOF2   <---------ICU4               <------- -CCA1(2)  ------>MYB83  --------->ZAT2 <---------ARR11(3)     <---------YAB1                --------   tattatataaaccaacatccatttctcagctcctcatcaaattatcttctttctctttctctctgatcatttccaaattatttctaagctaagaaaatct  19399700                                        --------->ARR14(2)                                        <---------ARR14(2)                                   --------->MYB52(1)                                   ------>MYB83                                   -------->P                                  --------->MYB55(1)                                 --------->MYB46(3)                                 <---------MYB111(1)          <------ZmHOX2a(2)                                 --------->AtMYB61            =========================HOX2a_HOX2a                      --------->YAB1<---------LBD16          --------->ARR11(3)                    --------->AHL20(2)--------->LBD16        <---------ARR11(3)        ---------->DOF2          <---------MYB111(2)   ------>ZmHOX2a(2)             ------>ZmHOX2a(2)  --------->YAB1   --------->YAB1<---------MYB46(2)    ================================HOX2a_HOX2a  - ->GLK1(2)      --------->HSFB2a(2)------>MYB46(1)    --------->At4g35610          <---------ARR11(3) --ARR11(3)<---------HSFC1(2)    <---------MYB59      <---------At4g35610       ------>ZmHOX2a(1)   < ->ARR11(3)--------->HSFC1(2)    <---------MYB55(2)  <---------AGP1    <-----------GT1          -----   ttaaaaataacaaagcttctaaaataataatccgacctaccggattcaaaccattgatctgaagatcatctataaaccagtccttgatctataaactaaa  19399800                                                      <-----------GT1                                                 <---------AHL20(1)          <---------ANAC58                       --------->AHL20(1)          <---------ANAC58                       <---------AHL20(2)       <--------P                                --------->AHL20(2)       <---------MYB52(1)                       <---------AHL20(2)      <-------GAMYB                             --------->AHL20(2)     <------MYB83                               --------->YAB1     <---------DEAR3(2)                      <---------ICU4     <------MYB46(1)                         --------->YAB1     --------->MYB52(2)                     <---------YAB1     <---------MYB46(3)                 <-------GAMYB --------->ARR11(3)        <---------AHL20(2)    <---------DREB2C(2)                ----------->GT1<---------ARR11(3)       <---------YAB1      --    <---------DEAR3(1)                 <---------MYB46(3)                    --------->ATHB12   <----  ------------>AtMYB77                ---------->ID1<---------AHL20(2)      <---------YAB1     <----- -------->MYB59 <---------ICU4  <---------YAB1 <---------YAB1             --------->YAB1--------->YAB1 ---------TOE2(3)     <-----------GT1 <---------TOE2(3)                <----------DOF2 <------ZmHOX2a(2) ---->YAB1<---------ANAC46 <----------DOF2  --------->ICU4         <-----------GT1     ==============   ataaggtcggttgcttaatctttgttacccttttatttttgtggttataattatattatcttcattttgtttccttttatgattaatcgatcatatcagg  19399900                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                =====                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                -----            <---------TOE1(3)                                                                   -----            <---------TOE2(3)                                                                   -----  <---------CCA1(1)                                                                     --------->KAN4(2)  <---------RVE1(1)                                                                    <---------KAN4(1) <---------ARR11(3)                    <---------YAB1                                  --------->KAN4(1) --------->ARR11(3)                 <---------AHL20(2)                                 <----------TaMYB80 --------->ARR10                   --------->AHL20(2)                              <---------YAB1<--- --ZmHOX2a(1)                   <---------GLK1(2)                          <-----------GT1   ------>ZmHOX2a(1) ----YAB1<---------MYB52(1)   --------->LBD16                              <---------DOF5.7(2)<------ ==HOX2a_HOX2a         --------->AHL20(2)      ---------->DOF2        ----------->GT1 ------->TEIL   atagatatttcgttaagtttatagtttaaatccagaattttatgtttagaaaagagaatgggaagagttgaagtgtttaacgtctatgaatattcctcac  19400000      ---------->DOF2 ----------->GT1 --------->ANAC58 --------->ANAC58 -----TGA1a -----ANAC55(2) -----bZIP60(1) ---->bZIP60(1) ================bZIP_DOF -----O2----------->GT1 ---->TGA1a ---->O2<----------ID1                                                                             <- ---->ANAC58                                                                                    <---- ---->ANAC46                                                                              --------->YAB1 ---->ANAC58                                 <<<<<<<<<<<<<<<<<LFY                      <----------DOF2 --------TGA1                  ------>ZmHOX2a(1)   <---------MYB46(3)            --------->ANAC46 <-- ---ALFIN1           <---------YAB1         ------>ZmHOX2a(1) <-------GAMYB     <-------TEIL --------   gtcaagaaaaaagaaaaaaaactatgaatggtcctctctcgatgtccttacattggttagagagcgttgcaactacaatacatacatcactttcatcata  19400100  Previous    Next  AGI:  At2g47240.1    Description:  long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein. similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT4G11030.1); similar to long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase [Arabidopsis thaliana] (TAIR:AT4G23850.1); similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT1G64400.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40146.1); similar to long chain acyl-CoA synthetase 1 [Brassica napus] (GB:ABY77761.1); si Range:  from: 19399628    to: 19404901    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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