Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       ----------->GT1                               --------->ANAC58                               --------->ANAC58                       --------->AHL20(2)               <------ZmHOX2a(1)    <---------AtMYB61     <-------GAMYB              --------->DAG2              ----------->GT1  --------->ANAC55(2)       <---------ANAC46   --------->ATHB12             ----------->GT1   --------->ANAC46        ------->GAMYB---------->DOF2---------->DOF2 -------->ZAT6<----------ID1  <---------LBD16        --------->At4g35610   --------->ICU4 ->MYB59 ---------->DOF2     <-----------GT1         <---------At4g35610   <---------YAB1  ------->TEIL   ttacactgggctaaagaggaaaaaaaaaaattcacgcgatggtgattttgaagacaactgcgttgataaaaaaaggcatgatttcaaaaggtgaacccct  19390400                                          <------ZmHOX2a(2)                         <---------ALFIN1 --------->CCA1(2)                        --------->ZAT18  <---------ARR11(3)                        <---------ZAT18  --------->ARR14(2)                       --------->ANAC58  <---------ARR14(2)                       --------->ANAC58  <---------AGP1            --------->ANAC58             --------->AGP1         ----------->GT1            --------->ANAC58             --------->ARR11(3)   <---------WOX13(1)         ----------->HVH21  <----------DOF2------>ZmHOX2a(2)--------->ATHB12     <---------AHL20(2) <---------GLK1(2)    ------->GAMYB    ----------->ARR10   <---------YAB1        --------->AHL20(2)   acagaattgctctcacgctctcaacgcgcactttgtgcgagtagatctgaaatacagccttgtgattggctaaaaaactctaaaaaaatagaaatagtag  19390500                                               <---------MYB52(1)                                            <---------MYB52(1)                                            <------NtERF2                   --------->AHL20(2)      ------>NtERF2                                            -                  --------->ICU4     ---------->DOF2                                        <--------                  <---------YAB1  --------->ANAC46                                         ------>MYB83         <---------ANAC58       <---------HSFB2a(2)                 <---------At4g35610    --------->MYB52(1)         <---------ANAC58       --------->HSFB2a(2)<---------AHL20(2) <----------DOF2      ------>MYB46(1)     <---------ANAC58      <----------DOF2--------->DEAR3(1)      <-----------------AGL1--------->MYB46(3)     <---------ANAC58  <-----------GT1 --------->ANAC46      ------>ZmHOX2a(2)     ------>ZmHOX2a(2)<   acatgttgctagcttatgttattatttagcttttctacaaaacgccgtcgttttttatttcgatcgtttcagcttttggcattgatccgaaccaatcggt  19390600                                                                                <--------HAHB4                                                                                --------->ATHB12                                                                                <---------ICU4                                                                               <---------ATHB12                                                                             <-----------GT1                                                                             --------->WOX13(1)                                                                            <---------AHL20(2)                                                                            --------->AHL20(2)                                                                        --------->AHL20(2)                                           <------MYB46(1)              <---------AHL20(2)                                  --------->ARR11(3)                   <---------AHL20(2)  ------->GAMYB                   <---------ARR11(3)               --------->AHL20(2) -------->At4g35610              --------->RVE1(1)                 <---------AHL20(2)     <---------YAB1 -ATHB12                         --------->CCA1(1)    ---------->DOF2 --------->YAB1<---------AHL20(2) ---------At4g35610     ----------->GT1    <------MYB83          --------->AHL20(2)--------->AHL20(2)   tcaactggctaagtctatccacaggtttgtataaaaaatctcatttggtcatgaaattaagcactaaatttatattaattaatcatttaatgcttataga  19390700                                                  <------------CBF                                                 --------->ATHB51                                                 -------->ATHB1                                                 --------->ATHB12                                                --------->AHL20(2)                                                <---------ATHB51                                                <---------AHL20(2)                                             --------->AHL20(2)                                             <---------AHL20(2)                                             <---------AHL20(1)                                       --------->ANAC46                                  <---------------AtSPL3                                 <------------CBF<---------ICU4                                ------>MYB83--------->AHL20(2)                                ------>MYB46(1) --------->ICU4       <------------CBF     -----------                              <---------MYB59--------->AHL20(1)   ------------>CBF     --------->LBD16                   <---------TOE2(3)   --------->ANAC58   <---------HSFB2a(2)        <---------LBD16 --------->GLK1(2)--------->MYB52(1)   --------->ANAC58   --------->HSFB2a(2)  --------->AHL20(2)   caaattctatttcatatttctaacgaatcagacctaattgtacgaaataaattattggttctgaaaatatcaattgggaaattaaaacccggttcaattt  19390800                                                                      <---------MYB52(2)                                                                     --------->ANAC58                                                             --------->O2                                                             =============================bZIP_DOF                                                             --------->TGA1a                                                          <---------LBD16                                                      <---------HSFC1(2)                                                      --------->ZAT2 --------->ANAC46                        <---------HSFB2a(2)           --------->HSFC1(2)--------->MYB52(1)                        --------->HSFB2a(2)           --------->HSFB2a(1)                      ----------->RAV1(2)             <---------HSFB2a(1)                --------->STY1(2)                     --------->At4g35610   ----------->GT1   ------>NtERF2                    <---------At4g35610       --------->DAG2   --------->LBD16  --------->ANAC58             <------ZmHOX2a(1)   --------->ANAC58      ========== <---------LBD16<---------STY1(2)             <-----------RAV1(2)  <---------AtLEC2        <--------- ->CBF       *TSS   --------->ANAC58      <-----------HVH21 --------->LBD16    ---------->DOF2   gaaaccggaaacaagactagctacgcctggaaactctcacacagagtcacaggagaagctcccgcgtctgcaaggaacggataaagtctctctctttctc  19390900                                                 --------->ZAT6                                   --------->ANAC46                                              <---                           <---------TGA1a ------->TEIL                                        <-----                           <---------O2 --------->ANAC58                                  <----------DOF2                           <---------bZIP60(2)<---------ZAT14                       <---------ZAT2  <                        ----------->HVH21------->GAMYB                              --------->ZAT2  -                        ----------->TGA1--------->ANAC58                          <------NtERF2<-----                      --------->At4g35610<---------ZAT18                         --------->LBD16<----                    --------->ARR11(3)---------->DOF2            <---------ARR14(2) <---------At4g35610              >>>>>>>>>TBF1======================MYC_MYB    <---------ALFIN1    --------->DEAR3(1)  < ====================================bZIP_DOF --------->ZAT14    --------->ARR14(2) --------->At4g35610 -DOF2   <---------ATHB12  ======================bZIP_DOF  <---------ZAT14     <---------LBD16-------   actctctctcaatgaagaagaagatgctgacgagtcccagtaacgcacttcacagtagtactccacagttctggccagttcgccggagcagactttgccg  19391000                                             --------->ALFIN1                                            --------->ATERF1(1)                                          <---------DEAR3(1)                                         --------->ATERF1(1)                                         <------NtERF2      --------->HSFB2a(1)                <---------LBD16      <---------HSFB2a(1)              --------->DEAR3(1)     ---------->TaMYB80                <---------DEAR3(1)    <---------GLK1(2)                  <---------RAP2.3(2)                                 ----------    --------->ARR14(2)             --------->At4g35610                                   <------NtERF2  --------->LBD16                  <---------At4g35610                                  ------>NtERF2 --------->HSFB2a(2)               --------->ZAT2                                       <---------RAP2.3(1) --------->ANAC46                  <---------ZAT2 <------ZmHOX2a(1)                    <---------ANAC46 <---------HSFB2a(2)              ----------->RAV1(1)                                  <---------bZIP60(1) --------->LBD16               --------->ANAC46  ----------->GT1                       <---------PCF2 ------ARR14(2)                --------->ANAC58 ----------->GT1                        --------->bZIP60(1) ----ANAC58                    --------->ANAC58<------ZmHOX2a(1)                      --------->RAP2.3(1) ---------HSFB2a(2)         <---------SPL7<---------ANAC46                          --------->ALFIN1 -------->HSFB2a(2)      ------>NtERF2--------->At4g35610                      --------->LBD16 ----ANAC58              --------->LBD16<---------RAP2.3(1)                   --------->ANAC46 -----SPL7  <---------TOE1(2) --------->SPL7<------NtERF2                     --------->HSFB2a(2) ---------LBD16         <---------DEAR3(1)--------->ALFIN1                    <---------HSFB2a(2) ---------->AGL1       <---------LBD16<---------At4g35610                    <---------LBD16   ttcccggaatttccctcgttttcactccggcgaacgcagcagcggcggaggaggaaaattgtgctcgctctctcttctctccggaagtggcgccagtaaa  19391100                                                                                    --------->GLK1(2)                                                                                    --------->ARR14(2)                                                                                    <---------ARR14(2)                                                     <---------DEAR3(1)          --------->ANAC55(1)                                                   <---------RAP2.3(1)           <---------ANAC55(2)                                                  <---------At1g77200            --------->O2                                                  <---------DEAR3(1)             --------->ANAC58                                                 <---------MYB52(1)              --------->ANAC46                                                 --------->ATERF1(1)             --------->ANAC55(2)                                                <-----------HVH21                --------->ANAC58                                          ------>NtERF2                   <---------MYB59 <<<<<<<<<WRKY18                                          <---------ATERF1(1)       ----------------------->TaNAC69(2)                                       --------->At4g35610         <---------ANAC58 <---------ARR11(1)                                       <---------At4g35610  <---------GLK1(1) --------->MYB46(3)                  --------->MYB59  ----------->TGA1------>NtERF2   <---------ANAC58 ------->TEIL   <-----------HVH21               ----------->HVH21<------NtERF2  <---------ANAC46<---------CCA1(2) ->GT1   --------->GLK1(1)<---------YAB1 --------->WRKY12<---------MYB46(3)------>ZmHOX2a(1)   ttcagtgtcagagctctagttaggcctgatgataccgatgacgctgactccgtcggcgatgggtctctggcttgttcctaaccacgtatctgtcaaaatt  19391200                                                                                                  ---                                                                                                  <--                                                                                                 <---                                                                                                <----                                        <----------DOF2                                         <----                                       <---------DAG2                                         <------                                    ------->TEIL               <---------At4g35610          <------MYB46(1)                                --------------->AtSPL3  <---------MYB46(3)                  <------MYB83                                --------------->AtSPL8<---------ANAC58                    <---------WOX13(1)                            ---------->DOF2           <---------ANAC58                  --------->ATHB12                       --------------->AGL15         <---------MYB46(3)                <---------YAB1                       <---------------AGL15     --------->ATHB12 ----------->GT1      --------->ICU4              ----------->GT1--------->DAG2<---------YAB1      ----------->RAV1(2)   <---------At4g35610   ccattcggaaatagagaggtaatttcttcataaagctgtacccttttgatttcattggttgtttcatctggtcaaatttgaattcggagatgattggtag  19391300  Previous    Next  AGI:  At2g47220.1    Description:  3' exoribonuclease family domain 1 protein-related. similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G11420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67489.1); contains InterPro domain Protein of unknown function DUF724 (InterPro:IPR007930); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Exoribonuclease, phosphorolytic domain 1; (InterPro:IPR001247) Range:  from: 19390813    to: 19394024    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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