Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->DEAR3(1)             <---------O2          <-------TEIL  --------->ATHB12          ----------->HVH21       --------->CCA1(2)     ---------->DOF2     <---------ARR14(2)     <---------YAB1               ------->GAMYB ----------->HVH21       --------->ARR14(2)     <------ZmHOX2a(2)           --------->ANAC58 -------DOF2 <---------DEAR3(1)  --------->ARR14(2)                         --------->ANAC46 ---->TOE2(3)<---------bZIP60(2) <---------ARR14(2)   <---------ANAC46      --------->ANAC58       --   tttgtgacaaagacgacggggcattcggttttgcagatacagcatcgacgatcattgagtatgaaacgaagacgaacaacgcaagtagagcaaacctctc  19351300                    ------>MYB83                    -------->P                    ------>MYB46(1)                  --------->AtMYB61                  ------->GAMYB                 <---------MYB52(2)            --------->RAP2.3(1)             --------->LBD16                 --------->ANAC46            <---------ANAC55(2)            --------->MYB52(1)            --------->ANAC55(2)         --------->LBD16            --------->ANAC46           --------->ANAC46           ------>ZmHOX2a(2)           --------->ANAC58           <-------TEIL                --------->ANAC58          <------ZmHOX2a(2)           --------->LBD16          --------->CCA1(2)           ------>NtERF2         --------->ARR14(2)           <---------LBD16         <---------ARR11(3)     <-----------ARR10         <---------ARR14(2)     --------->GLK1(2)        --------->YAB1                    <------ZmHOX2a(1)         --------->AGP1        --------->ARR14(2) <------NtERF2                           --------->LBD16         --------->ARR11(3)    <---------GLK1(2)--------->ANAC46                        <-----------RAV1(2)       ----------->ARR10       <---------ARR14(2)------>NtERF2                  *TSS    <---------LBD16 --------->HVH21 --------->MYB46(3) <---------LBD16  <---------MYB52(2)        <---------ATHB12------   tgtgaccacaagatccgtaaccaacccattcgagattctccgcgcaaacggcgcaactatcatccatggtttctaactccaacgattttctcaggagaaa  19351400                                                                                                   xx                                                                                                  xxx                                                                                                  <--                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                 <---------YAB1                  xxxx                                                                <---------AHL20(2)               xxxx                                                              <---------YAB1                     xxxx                                                            --------->YAB1                       xxxx                          <---------YAB1                    <--------HAHB4                       xxxx                       <---------------AGL15               <---------YAB1                        xxxx                       --------------->AGL15             ------>ZmHOX2a(1)                       xxxx                   <---------ZAT18                    <<<<<<<<<ARR2                             xxxxx                 --------->ANAC58                     <<<<<<<<<ARR2 <---------AHL20(2)       <-------                 --------->ANAC46                     <<<<<<<<<ARR1 <---------YAB1        <----------                 --------->ANAC58                     <<<<<<<<<ARR1--------->AHL20(2)   --------->ARR11(3)                ------->GAMYB        <----------ID1--------->MYB46(3)            --------->ANAC58xxxx        <------------CBF--------->YAB1--------->CCA1(2)--------->YAB1            --------->ANAC58*TSS --->GLK1(1) ----------->RAV1(1) ---------->DOF2  ------------>CBF <---------AHL20(2)  --------->YAB1   cccagagagagattgcaacaggccacttataagagaaaagagacgaaggaacaacaatcctattattattttaattcagacacaagtaaacatattgggg  19351500  --------->At4g35610  <---------At4g35610   <----------DOF2 ------->TEIL   <---------ZAT18 xxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxx>smallRNA(fl3) -------REM1(1) --------->ZAT18 xxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxx>smallRNA(le3)                                 --------->At4g35610 xxxxxxxxxxxx>smallRNA(i)                                   --------->GLK1(1) xxxxxxxxxxxx>smallRNA(s)                                  ------->TEIL xxxxxxxxxxxxx>smallRNA(le3)                              <---------ALFIN1 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      --------->LBD16 xxxxxxxxxxxxxxx>smallRNA(le3)                          --------->ANAC58 xxxxxxxxxxxx>smallRNA(fl3)                             <---------ALFIN1 xxxxxxxxxxxxxxxxxx>smallRNA(si3)                       --------->ANAC46 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <-------PIF5  --------->ANAC58 xxxxxxxxxxxxxxxxxx>smallRNA(se3)         ------->PIF5 <---------LBD16 xxxxxxxxxxxxxxx>smallRNA(si3)          <---------LBD16--------->ANAC46 xxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxx>smallRNA(si3)                            --------- xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(se3)                          ---------- xxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxx>smallRNA(s)                            <-------TEIL xxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxx>smallRNA(le3)                          --------->GLK1(2) xxxxxxxxxxx>smallRNA(fl3)  <---------ANAC58           --------->LBD16                   --------->ARR14(1) --LBD16     ---------->DOF2<---------ANAC58       <------ZmHOX2a(2)                    <---------GLK1(2) --CBF       xxxxxxxxxxxxxxxx>smallRNA(se3)       --------->ARR14(2)        <---------AHL20(2) xxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->AHL20(2)  -----   atgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccaactcattttttaattttctgagattcgttaa  19351600                                                              --------->DAG2                                                   <---------ANAC58                                                   <---------ANAC55(1)                                                   --------->ANAC58                                                   --------->ANAC46 <---------At4g35610                                                   <---------ANAC55(2)                                                   <---------ANAC46 <---------ZAT2                                                   --------->ANAC55(2)                                                   <---------ANAC58 --------->ZAT2                                                   --------->ANAC58 --------->At4g35610                                                   --------->ANAC55(1)   <----------DOF2                               <-----------GT1  <---------ZAT18 >TOE2(3)            --------->AHL20(2)    ----------->GT1   ---------->DOF2                --------- ->GT1---------->DOF2<---------AHL20(2)   ----------->GT1--------->YAB1                    --------->MYB46(3) ----->DOF2         --------->ICU4    ---------->DOF2  <------------CBF       --------->TOE2(3)     <   aaggcctttgaagcccaatgtaattaataaaacccattttcaaaggggtaattacgtaattgtaaaagcgagctccaaaaccctagtttctcaaccacta  19351700                                                                           ------>ZmHOX2a(2)                                                                          <------ZmHOX2a(2)                                                                         <---------ARR14(3)                                                                         --------->AGP1--------->TOE1(3)                                                                         --------->ARR11(3)                                                        --------->ANAC58 <---------ARR11(3)                                                        --------->ANAC58 --------->ARR14(3)                                                      ---------->DOF2    <---------AGP1--------->TOE2(3)                                                   --------->At5g28300   --------->ARR14(2)                                  --------->LBD16  --------->LBD16       <---------ARR14(2)  <-------                                --------->LBD16   <---------ANAC46       <-----------ARR10  <--------      <-----------GT1       <---------ARR14(2)    --------->RAP2.3(2)   <---------CCA1(2) --------->MYB52(1)  <---------AHL20(2) ---------->DOF2  *TSS        --------->RAP2.6(2)  ----------->ARR10 ----------->HVH21 >AtMYB61    <-----------GT1--------->ARR14(2)  ------>NtERF2        <-------TEIL     --------------- ----------DOF2 <---------ALFIN1<---------LBD16 --------->LBD16---------->DOF2<---------ANAC46   ctcttttatttcttctcaccacttaaagagtttccccagaaattttcttccgccgtaaaagcaaaaaaagatgcagatcttcgtgaaaaccctaacgggg  19351800                                                                                      <---------ZAT2                                                                                      <---------At4g35610                                                                                      --------->At4g35610                                                                                      --------->ZAT2                                   <---------ETT(2)             --------->ANAC58    <-----------RAV1(2)                             --------->bZIP60(1)                --------->ANAC58<---------SPL7                          ----------->HVH21            <------ZmHOX2a(2)        --------->LBD16                        ----------->RAV1(2)            --------->CCA1(2)        ----------->HVH21                        --------->At4g35610           --------->ARR14(2)       --------->MYB46(3)    <------ZmHOX2a(2)   <---------At4g35610           --------->AGP1   <---------GLK1(1)    ===========================HOX2a_HOX2a            <---------ARR11(3)       --------->DEAR3(1) --LBD16                ------>ZmHOX2a(1)             <---------ARR14(2)     --------->MYB52(1) -ANAC46              --------->ZAT18                 --------->ARR11(3)--------->GLK1(1) -->AGL1              <---------ZAT14     <-----------HVH21--------->ANAC46 <---------ALFIN1 <-------   aagacgatcactctcgaggtcgagtcctctgacaccatcgacaatgtcaaggccaagatccaagacaaggaaggaatcccaccggaccagcagcgattga  19351900                               --------->TOE1(3)                               --------->TOE2(3)             <---------At4g35610             <---------ZAT2  ------->TEIL             --------->ZAT2<---------SPL7       ---------->DOF2    --------->ANAC58      <------NtERF2       <---------ANAC58                                                 <---------AtMYB61     --------->LBD16      --------->ANAC58                          <---------ALFIN1    --------->ALFIN1    --------->LBD16       <---------ANAC58                          --------->REM1(1)  --------->LBD16   <---------LBD16       ------->TEIL             <---------HSFB2a(2)                 <---------ANAC46 --WOX13(1)  --------->At4g35610                  --------->HSFB2a(2)         ------>ZmHOX2a(1)  ----   ttttcgccggaaagcagctcgaagacggacgtaccttagccgattacaacatccagaaggaatcaacgcttcaccttgtccttcgtctccgtggaggtgc  19352000                          ------>MYB46(1)                          ------>MYB83                          --------->ANAC58                     --------->ANAC46                     --------->REM1(1)                    ------>MYB83               --------->ANAC58                                    <-                    ------>MYB46(1)      --------->ANAC58        --------->ZAT18          <-------TEIL                    -------->P           --------->ANAC58      --------->ZAT2            <--------P<-                <---------ARR11(3)    <------ZmHOX2a(2)       --------->ANAC58     <---------REM1(2)                --------->ARR11(3)   --------->ARR11(3)       --------->ANAC58    <---------HSFB2a(2)          >>>>>>>>>TBF1   --------->ANAC58     --------->ANAC58<---------ZAT2     --------->HSFB2a(2)      <------ZmHOX2a(1)--------->ANAC46---------->DOF2xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <-- ----------->AGL15--------->AtMYB61  <---------ARR11(3)    --------->WRKY18(1) --------->AGP1 <------   taagaagaggaagaagaagacctacaccaagcctaagaagatcaagcacaagcacaagaaggtcaagctcgctgttcttcagttctacaaggttgatggt  19352100                                        ================RAV                                        ----------->RAV1(2)                                   --------->ANAC46                                   --------->ANAC58        <-------TEIL             --------->MYB52(1)    --------->MYB59              ---------->DOF2<---------ZAT2    <---------TOE2(3)           ----------->HVH21          <---------AtLEC2    <---------TOE1(3)       <---------ZAT18     --------->ZAT2    --------->DAG2          --------->ZAT18    --------->ALFIN1                                   <--  <--------P             <---------ANAC58   <---------AtMYB61   <---------ANAC58            <--------P --------TOE2(3)         <---------ANAC58   <-----------RAV1(1) <---------ANAC46       <-----------RAV1(1) --------TOE1(3)        <------ZmHOX2a(1)   --------->ALFIN1    <---------ANAC58     --------->ZAT14 ---------RAV1(2)   <------ZmHOX2a(1)  -------->P<---------ANAC46                    <---------ZAT14x ---MYB46(3)      <---------TOE2(3)--------->ANAC58     <----------DOF2       ------>ZmHOX2a(2) -----   tcaggtaaggttcagcgtttgaggaaggagtgccctaacgcaacctgtggtgctgggactttcatggcgagtcatttcgatcgtcactactgtggtaagt  19352200  Previous    Next  AGI:  At2g47090.1    Description:  nucleic acid binding. similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT3G62240.1); similar to Os05g0279400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055084.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40185.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 19348376    to: 19351380    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g47100.1    Description:  pre-tRNA. tRNA-Ala (anticodon: TGC) Range:  from: 19351497    to: 19351569    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g47110.1    Description:  UBQ6 (ubiquitin 6); protein binding. Identical to 40S ribosomal protein S27a-2 (UBQ6) [Arabidopsis Thaliana] (GB:P59232;GB:O80715;GB:P19233); similar to UBQ5 (UBIQUITIN 5), protein binding [Arabidopsis thaliana] (TAIR:AT3G62250.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71283.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Ribosomal protein S27a; (InterPro:IPR002906) Range:  from: 19351738    to: 19352415    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g47115.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10660.3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10660.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10660.4); similar to unnamed protein product [Vitis vinifera] (GB:CAO40183.1) Range:  from: 19351738    to: 19353991    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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