Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           ---------->ARF1     <---------ANAC55(2)     <---------TGA1a     --------->ANAC55(2)     <---------O2     --------->O2 <-----------TGA1 <-----------HVH21 -------->ANAC58 ---------ANAC55(2) ---------bZIP60(1) -------->ANAC46 ---------TGA1a -------->TGA1a -------->O2 ---------O2 -------->bZIP60(1) -------->bZIP60(2) -------->ANAC55(2)                                                        --------->ANAC58 -------->ANAC55(1)                  ------>ZmHOX2a(1)                     --------->ANAC58 -------->ANAC58                   --------->At4g35610      <---------TOE2(3) ----------STF1                    ----------->RAV1(2)      <---------TOE1(3) ------GT1                 >>>>>>>>>EIN3              <---------ANAC46     --------->ANAC46 --------->TaNAC69(2)     <-------TEIL              <---------ANAC46      <---------LBD16        <---   ccacgtcacttgtctcgcacaatccatatacattgtctcctgcaatattgtatgtggtgttttaggttttttttttcacgcataaacattttttatacat  19273100                                                  <---------AHL20(2)                                                 --------->AHL20(2)                                         --------->ATHB12                                         <---------ICU4                                         --------->YAB1                                         --------->ATHB51                                         <--------ATHB1                                           ---                                         -------->ATHB1                    <------MYB46(1)       <---              <---------AHL20(2)        <---------ATHB51                   <------MYB83         <----              <---------AHL20(1)        <---------YAB1                    --------->MYB59       ----- ----TEIL     --------->AHL20(1)        --------->ICU4                 --------->GLK1(2)      -------   acactaagttaactaaaatatttgtatagataacaaaacacaattattgtataaaattttgtattatttgaagaatttggtaccagagaagacgatgaga  19273200                                                                          ----------->HVH21                                                                        ----------->GT1      <---------HSFB2a(2)                                    <------ZmHOX2a(1)      --------->HSFB2a(2)                                   ----------->GT1      <---------LBD16                                      <---------TOE2(3)   <----------DOF2           ---------->DOF2         --------->At4g35610<---------At4g35610       <-- --->ZmHOX2a(2)          --------->At5g28300         --------->ZAT14    --------->At4g35610   <------ ---ZmHOX2a(2)          ----------->GT1          ===================HOX2a_HOX2a             <-------- -----ARR14(2)        --------->At4g35610        ------>ZmHOX2a(2)    <-----------RAV1(2)   <-------- ---->ARR14(2)      --------->ZAT18             ====================HOX2a_HOX2a             <-------- ---->ARR10         <---------ZAT14             <------ZmHOX2a(2)--------->GLK1(2)          <--------   tcgggcttctcggaagcgatagttcgctgtaaaaaggaggtagtattgagatcggagcagtaaggaaattctgcaggtgaaacgtctgagcattgcgtct  19273300                                                                                                  ---                                                                                                <----                                                --------->AtMYB61                               -----                                               --------->MYB46(3)                               <----                                              ------>MYB46(1)        ------>NtERF2              -----                                              ------>MYB83         --------->ATERF1(1)          =====                                             --------->ORA47(1)   <---------ZAT2                <----  ----------------->AG----------->HVH21     --------->DEAR3(1)    --------->At4g35610           -----  ----------------->AGL1           <---------ARR11(3)             --------->ZAT2                ----- --------DOF2      <---------ARR14(2)      --------->MYB46(3)     <---------At4g35610          <----- ---CCA1(2)        --------->ARR14(2)      --------->DEAR3(2)     <---------ATERF1(1)        -------- -ANAC55(2)       <---------GLK1(1)--------->GLK1(2)             --------->ARR14(2)          <------- -ANAC58          <---------CCA1(2)--------->ARR11(3)            <---------ARR14(2)         <------NtERF2 -ANAC58       <---------ZAT18     --------->ARR14(2)          --------->LBD16             --------->LBD16 -ANAC46 --------->TOE2(3)         <---------ARR14(2)        <---------LBD16             <---------LBD16   ctttgccaaaaccgtagtgcatatctgacacttgcagtatcttgaaccgaccatcagtattaaaccggagctgccttctaccgaagtcgaaggcggaaac  19273400      --------->ETT(2) <---------bZIP60(2) -------->HVH21 -----O2 ---->O2 -----TGA1a ---->TGA1a                                                                                  -------- ===================================bZIP_DOF                                  --------->AHL20(2) -----ANAC55(2)                                               ------>ZmHOX2a(1)         <---------TOE1(3) ------>GT1                                     --------->CCA1(2)            <---------MYB52(1) ---->ANAC55(2)          ---------->DOF2       <---------ARR14(2)        ------>ZmHOX2a(1) <--------P ------------------TaNAC69(2)                  --------->ARR14(2)    <---------ARR14(2) <---------TOE2(3) ->ARR14(2)            ==============================HOX2a_HOX2a     --------->ARR14(2) --------->MYB59 --ARR14(2)            <------ZmHOX2a(2)      <------ZmHOX2a(1)  --------->LBD16    <----------DOF2   gtgacatgtcgaaagacataagtagatcaaagaaacacttagaacagaggatatgacaaacctcctccgagtttcctccattaattcttttaggttagtg  19273500                                             --------->ANAC55(2)                                             <------MYB83                                             <------MYB46(1)                                             <---------ANAC55(2)                                            --------->MYB59                                       --------->AHL20(1)             <---------RVE1(1)                                       --------->AHL20(2)            <---------GLK1(2)                                       <---------AHL20(1)     <---------AHL20(2)                                       <---------AHL20(2)     <---------YAB1        --------->ARR11(3)                                    <---------AHL20(2)        --------->AHL20(2)    <---------GLK1(2)                                    --------->AHL20(2)       <---------AHL20(2)   <---------ATHB12                                 --------->AHL20(2)          --------->AHL20(2) ---------->DOF2                                 --------->YAB1  <-----------TBP     <---------ARR11(3)             -    ------->TEIL     --------->YAB1 <---------AHL20(1)      --------->YAB1    --------->LBD16       < <---------YAB1*TSS --------->ICU4  --------->AHL20(1) ------------>CBF   <-----------GT1--------->YAB1 ->MYB52(2)<---------At4g35610--------->YAB1--------->MYB111(1)      --------->ARR11(3) <---------YAB1   actatgaaactggagatgagaaatgataacgagaataatattttattaggtatttatagcaattttaattagattttttccccaaagattatgatagcat  19273600                                              <-----------------AG                                              <-----------------AGL1                                    <---------YAB1                                   <-----------GT1                                 <---------AHL20(2)                --------->ATHB12                          <-----------GT1    <-----------GT1      <---------YAB1          <---------AHL20(2)                     --------->KAN4(1)     <---------MYB59     <----------DOF2          <---------AHL20(2)                     <---------KAN4(1)   <---------ARR11(3)------->MYC2                <---------AHL20(1)     <----------DOF2 <----------TaMYB80  <-----------ARR10 <-------MYC2                --------->AHL20(1) ------->GAMYB   ----------->GT1--------->AHL20(2)         <-------MYC3              <---------AHL20(1) -------->MYB46(3)  <---------KAN4(2)--------->ZAT6      ---------->TaMYB80          --------->AHL20(1) ---------MYB52(2)  ---------->TaMYB80   --------->GLK1(2) ------->MYC3             --------->AHL20(2)   caacaaacttttattctaatggtatattctacaattttatcagtatctaaccattttggcatatgcttttgatttgttcttgacaaatatatatttttgt  19273700                                                                                 <---------bZIP60(2)                                                                                 <---------TGA1a                                                                                 <---------O2                                                                                 --------->O2                                                                                 <---------ANAC46                              <---------AHL20(2)                                 --------->TGA1a                             --------->AHL20(2)                               ----------->HVH21                             <---------AHL20(2)                              <-------TEIL                    --------->YAB1                                          --------->ARR14(1)                   <-------TEIL                     --------->YAB1          --------->CCA1(2)              <---------AHL20(2)    <---------HSFB2a(2)                    <---------ARR14(2)              --------->AHL20(2)    --------->HSFB2a(2)                    --------->ARR11(1)    --------->HSFB2a(2)    --------->TOE2(3)       <---------YAB1          --------->ARR14(2)    <---------HSFB2a(2)  --------->ICU4  --------->AHL20(2)         --------->ICU4 --------->ALFIN1   gattttctgaaacaatataaattcataaatattaatttctagataaaataactatgattttaaaaaaacacttattagatacgacgtggacgagcccaaa  19273800                                                                                                 ----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                --------->YAB1 <-----                                                                                -------->HAHB4 <-----                                                                ------->GAMYB  <---------YAB1  ------                                                               <---------MYB52(2)              ------                             --------->ANAC46               <----------ID1   --------->YAB1   <------ZmHOX2a(1)                  --------->YAB1       <----------ID1<------ZmHOX2a(1)      <---------YAB1  <--------             <---------AHL20(2)    ---------->DOF2--------->At4g35610     --------->YAB1    <--------             --------->AHL20(2) ------------------------>ANAC81--------->MYB46(3)   --------->ANAC46   tagacaaaaacccattttaatgctaatttacacagaccaaagaaacaaaatcagaggaagaaacaacaaacaatgctcataataatacacaattaaggat  19273900      --------->ZAT6    <-----------GT1 -->ZmHOX2a(2) -----GLK1(1) ---->GLK1(1) --ZmHOX2a(2) ----ARR11(3)                                                          ----------->RAV1(1)          - ----ARR14(2)                          <---------GLK1(2)             <---------At4g35610            - --->ARR14(2)                         <---------At4g35610         --------->At4g35610               - --->ARR11(3)                         <---------ZAT2       <----------DOF2      --------->CCA1(2) --- -TOE1(3)                         <-----------GT1    <---------ANAC58--------->At4g35610          <-- -TOE2(3)                         --------->YAB1     <---------ANAC58--------->ZAT2          --------   ctctagtaaccctattgaaagtttgaaacaaactaatcacagcttcttcaagtgttcttgtctttagtagcagcagcatgagatttgaaccatggaatcc  19274000  Previous    Next  AGI:  At2g46880.1    Description:  ATPAP14/PAP14; acid phosphatase/ protein serine/threonine phosphatase. similar to ATPAP29/PAP29 (purple acid phosphatase 29), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G63140.1); similar to unknown [Populus trichocarpa] (GB:ABK93944.1); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843); contains InterPro domain Phosphoesterase At2g46880 (InterPro:IPR011230) Range:  from: 19271642    to: 19273515    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g46890.1    Description:  oxidoreductase, acting on the CH-CH group of donors. similar to oxidoreductase, acting on the CH-CH group of donors [Arabidopsis thaliana] (TAIR:AT1G18180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24356.1); contains InterPro domain Protein of unknown function DUF1295 (InterPro:IPR010721); contains InterPro domain 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; (InterPro:IPR001104) Range:  from: 19273802    to: 19275239    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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