Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               --------->LBD16                             <---------ICU4 --MYB52(2)                             --------->At4g35610                             --------->ICU4 >ANAC55(1)                             <---------At4g35610                             <---------ATHB12 >ANAC58                         <---------ARR11(3)  ---------->DOF2                    --------->AHL20(2) >ANAC58             ---------->DOF2 <-------TEIL   <---------AHL20(2)              <---------------- >ANAC46      <---------YAB1     --------->ARR11(3) --------->AHL20(2)       --------->MYB52(1)   <--   caaaaatttgaagattatacttaaaaagagagagagatattcatctccccaaatttaaagagacatttcaaaattgaactagcgaatgcaataaatacta  19204100                                   <---------YAB1                 <---------DAG2  <---------AHL20(2)   --------->ARR11(3)            --------->AHL20(2)   --------->AHL20(1)         <---------ICU4   <---------ARR11(3)        <---------YAB1                              <---------YAB1   <---------AHL20(2)        --------->ICU4                           <---------YAB1              ---   --------->AHL20(2)      --------->YAB1                      <----------DOF2                    ---   <---------AHL20(1)     <---------YAB1                   <----------DOF2--------->YAB1       ------ -----WRI1  <---------At4g35610 --------->ICU4          <-----------GT1--------->YAB1          <----- ----ZmHOX2a(1)  <----------DOF2<---------YAB1<---------At4g35610  <---------YAB1           ---------   ggaaatatattcgtagctcctttaccctatgataattaatattcagtcatctactattctactttctttgttattataagaagaagtagaattacattaa  19204200                                                 ------>MYB83                                                --------->MYB55(1)                                               <---------MYB59                                               <---------MYB46(2)                        --------->DAG2         <---------MYB111(2)                       ---------->DOF2      <-----------GT1               <---------ZAT6           <---------TOE2(3) ------>ARR11(3)----------->GT1         <---------TOE1(3) ------>GLK1(2)----------->GT1       <---------MYB52(1)  ------>ZmHOX2a(1) --->AHL20(2)<---------ANAC46     <-------TEIL <---------MYB111(1)      <---------AtLEC2 ----AHL20(2)<---------ANAC58  --------->HSFC1(2)-------->P    <----------DOF2    <-----------GT1   - >TOE2(3)    <---------ANAC58  <---------HSFC1(2)------>MYB46(1)        --------->YAB1             --   aatctgtgaacatttgagtgttaaataaagtgaagcttcgttaagtttacctaccattcctatttctttgtttttcatgacattttactagttgaatgct  19204300                              --------->AHL20(2)                              <---------AHL20(1)                              --------->AHL20(1)                             --------->YAB1          <---------AHL20(2)                          <---                         --------->AHL20(2)         --------->AHL20(2)                          -----                   ------>ZmHOX2a(2)         --------->At5g28300                                <----                  <------ZmHOX2a(2)         ------->GAMYB           <---------ZAT14 --------->AHL20(1)                 --------->AGP1  <---------AHL20(2) <---------AHL20(2)              <---------AHL20(2)                 <---------AGP1 --------->YAB1      <---------AHL20(1)              <---------ARR11(3)                 --------->ARR11(3)         --------->TOE2(3)     --------->ZAT18   --------->ARR11(3)                 <-----------ARR10          --------->TOE1(3)     <---------ZAT14   <---------AHL20(1)                 <---------ARR11(3)         ----------->GT1       --------->ZAT14   --------->AHL20(2)                <---------CCA1(2)<---------AHL20(1) --------->AHL20(1)       ----------->GT1   ------ -------->TOE2(3)--------->ARR14(2)       <---------At5g28300   <---------------AtSPL8   --------->YAB1 ------->MYB46(3)<---------ARR14(2)      <-----------GT1        <---------------AtSPL3  <-------TEIL   aaccaaaattctttgatcagatctaaactaaatataatatttgtaaccgtaaaatataatgtgaagagagtactgtacatagtgaatatattcatattcc  19204400                                                                                                  ---                                                                                                <----                                                                                                <----                                                        --------->TGA1a                     <--------               <<<<<<<ZML2                              <---------TGA1a   --------->ANAC58  ---------            <---------HSFB2a(2)===================================bZIP_DOF--------->ANAC58<---------ICU4     --------->AHL20(2)        <----------DOF2 --------->GLK1(2) --------->ANAC58        <---------AHL20(2) -------DOF2--------->HSFB2a(2)--------->TOE2(3)        --------->O2      ------>MYB46(1)<---------ATHB51 ---------->AGL15    --------->YAB1           <---------GLK1(2)  --------->ANAC46        <---------ATHB12 -----------AGL15   <-------TEIL        <-----------GT1 <---------O2      ------>MYB83   --------->ICU4 ----------->AGL1--------->KAN4(1)   <---------ICU4  *TSS        --------->ANAC58        --------->AHL20(2)   ttttcaagaaaatactagaacattcatacacatctttaaaaattactagattctagtcacttggcataagcaaaccaagctatccagccaaataattagt  19204500                        <---------ARR14(2)                   --------->AtLEC2              --------->ANAC46              --------->ANAC58             ------->TEIL ------>ALFIN1--------->ANAC58    <---------GLK1(1) -------RAV1(1)<-----------HVH21  --------->GLK1(1)                                             <---- -----ZAT6  <---------DOF5.7(2)  <---------ARR14(2)                                          <------- -YAB1     <---------WRKY38(1)   --------->ARR14(2)                                    --------->TOE2(3) >ICU4 <---------ZAT6   --------->ARR14(2)                   ----------->GT1         <-------TEIL   gttgggctagtggtgaacgtcatgcgaatagtctggataccctagtttgagtttaagttgagagggtttctaaacgatttttggaaatacattaactttg  19204600                         --------->YAB1                        --------->AHL20(2)<-----------RAV1(1)                  <-----------GT1      <---------WRKY12                                     <--------               <---------ICU4          <---------WRKY38(1)                          ----------->GT1              --------->AHL20(2)      --------->WRKY18(1)                          <---------------AtSPL8     <----------DOF2<---------YAB1 --------->DAG2                              <---------ZAT14 -----MYB46(3)<---------AHL20(2) ---------->DOF2          ---------->DOF2     <<<<<<<<<<<<<<<<<LFY  - ---DOF2 --------->HSFB2a(2)   --------->YAB1         ----------->GT1       ----------->GT1<---------ATHB12   gttcagactttctcgattaattaccattaaaaatcaaaaggtcaatgttgtcgaaaatgtaaaagtataggcttcaaatagtacaatggtacaatcaatg  19204700         --------->MYB52(1)        --------->TOE1(2)     --------->MYB52(1)                                                                            --   ------->GAMYB                                                                                   <-  --------->ANAC58                        <-------TEIL                               <-----------GT1  --------->ANAC46                       --------->CCA1(2)--------->ATHB12        --------->AHL20(2)  --------->ANAC58                   <--------P          <---------YAB1           --------->ATHB51 -- -ICU4 <---------MYB52(2)         <---------ZAT6   ------>ZmHOX2a(2)              <---------AHL20(2) -------->MYB52(1)           --------->YAB1    ----------->HVH21                  <---------ICU4   <-   cccaacgaaacgaacgaagcatatgaaacaaatatagtggtagatacatgtgatcgtgtatgattagaatttgctactctcgaattatttctgtttagtt  19204800             <------MYB83             <------MYB46(1)             <---------MYB46(3)            <---------AtMYB61           <--------P          <-------GAMYB         <------MYB83         <------MYB46(1)         <---------MYB46(3)        <---------AtMYB61                                                              <---------ICU4        --------->MYB59           <------ZmHOX2a(2)                                    --------->YAB1 ------->HSFC1(1)                --------->ARR11(3)                                   <---------ATHB12 --------HSFB2a(2)  <---------------AGL15                                  <---------ARR14(2) ------->HSFB2a(2)  --------------->AGL15                       <---------LBD16     --------->YAB1 --------HSFC1(1)<-----------GT1 <---------ARR11(3)     --------->TOE2(3)  --------->ARR14(2)   tctagagagtttggttggtttactatttgcagatagatcatggagaatgctacttcgacctcaatctctgggaaccatatactcactaatcatcttcaaa  19204900                                                           ----------->GT1                                                          <---------TOE1(3)                                                          --------->DAG2                                                          <---------TOE2(3)                                                       >>>>>>>>>>GATA-3                               <---------ANAC58        >>>>>>>>>>GATA-1                  ---------->DOF2                          --------->MYB52(1)           >>>>>>>>>>GATA-2           <---------GLK1(2) -                      <-----------GT1<---------TOE2(3) >>>>>>>>>>GATA-4           <---------ARR11(3)<             --------->MYB52(1)<---------ANAC58       --------->YAB1              --------->ARR11(3)<    ---------->ID1------->TEIL <---------ANAC46      <---------YAB1        <---------ANAC46       <--   cgatttgtcccaaaacaacgtatattactaactgcgtttgatgttttgaatatgtatgataaggttaaacatatagagcgtatagattttcaaaagcatg  19205000  Previous    Next  AGI:  At2g46720.1    Description:  HIC (HIGH CARBON DIOXIDE); acyltransferase. Identical to 3-ketoacyl-CoA synthase 13 precursor (HIC) [Arabidopsis Thaliana] (GB:Q9ZUZ0;GB:Q9FR50); similar to fatty acid elongase 3-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT3G10280.1); similar to fatty acid elongase 3-ketoacyl-CoA synthase [Brassica napus] (GB:AAT65207.1); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392); contains InterPro domain Thiolase-like; (InterPro:IPR016039); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328); contains InterPro domain FAE1/Type III polyketide synthase-like p Range:  from: 19204453    to: 19207291    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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