Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->CCA1(2)         <------ZmHOX2a(2)        --------->AGP1        <---------ARR11(3)        --------->ARR14(2)        <---------ARR14(2)       --------->GLK1(1)   --------->HSFB2a(2)                                                                   --------->TOE2(3)   <---------HSFB2a(2)                          <---------ANAC46                        ------------- --------GLK1(1)                       <-------GAMYB                                    <------------ >At4g35610                     <---------TOE2(1)                                       <------------ -At4g35610                     <---------TOE1(1)                                <----------DOF2 <--- ->RAV1(1)          <---------REM1(1) <---------MYB46(3)               ----------->RAV1(2)    <------   gatttcgcgagatccaaactagttgtagccaagaacgaggtcgttgaattgcctagacatgggatggagtcaaacctggacgactttgcaacctcattag  19092400                                              <------ZmHOX2a(2)                                             <---------ARR14(2)                  ----------->HVH21          <---------ARR11(3)                <---------At4g35610          --------->ARR14(2)            --------->ALFIN1                 --------->ARR11(3)            <---------REM1(1)                <---------ARR14(3)           ------->MYC3                      --------->ARR14(3) --------->At4g35610                         --------->AGP1 <---------ZAT2 --------->ZAT2              --------->GLK1(1)                    --------->AtLEC2 <---------At4g35610            --------->At4g35610                              --------->ANAC58 ---->AGL1 <-------MYC2         <---------ZAT14------>ZmHOX2a(2)          <---------ANAC58 -----AGL1 <-------MYC3--------->ANAC58     <---------GLK1(1)             <---------ANAC58    <------ -----AG   ------->MYC2--------->ANAC58    ----------->ARR10           <----------DOF2    <---------LBD16 ---ZmHOX2a(1)  --------->At4g35610   ---------->DOF2             ---------->DOF2--------->ANAC46 ---ICU4  <---------ANAC46      <---------At4g35610          ----------->GT1     --------->ANAC58   gacagctcaagaacgtgtagctgacaaggtagagagcagagaaaggagatcttgatatgtcgaaggtcaaaagctttcttgccaagcaattttcagggtc  19092500                                                               <---------ANAC58                                                               <---------ANAC58                                                       --------->ICU4                                                   --------->LBD16                                                  --------------->AGL15                <---------ANAC46                  <---------HSFB2a(2)                <---------ANAC58                  --------->ANAC55(2)              ------>NtERF2                       --------->HSFB2a(2)           <---------ZAT2                         <---------ANAC46         <---------ANAC58           <---------At4g35610                    ===================================================           --------->At4g35610                    <---------ANAC55(2) --------->ZAT2          <-----------RAV1(1)                    <---------LBD16      --------->At4g35610       --------->GLK1(2)                     --------->HSFB2a(1)      <---------At4g35610       --------->ARR14(2)                    <---------HSFB2a(1)      <---------ZAT2      <---------ZAT14       <---------ARR14(2)               --------->ANAC58   <------ZmHOX2a(1)              --------->ZAT14       ------->TEIL           ------>ZmHOX2a(2)  ----------------->AGL2    <---------ANAC46 <----------ID1 <---------ANAC58        --------->ANAC58 --------->MYB59   <---------ANAC58 -----HVH21--------->ZAT2     ====================================HOX2a_HOX2a        --------->ZAT2   atagagacgaatctgctggcttaaatagtcgatctctcggacaagaaatgttccggaattaggaagcttgagagctgtcttgggactagctgtgcattgg  19092600                =====================RAV               --------->MYB52(1)                ----------->RAV1(1)             ---------->DOF2          <---------AtLEC2                   --------------->AGL15        --------->LBD16                      <---------------AGL15       --------->ANAC46  <-----------RAV1(2)----------------->AGL1      <---------LBD16 --------->ZAT2        <-----------------AGL2    --------->ARR14(2)<---------ZAT2        <-----------------AGL1         --------->ANAC58    <---------ARR14(2)<---------At4g35610   ----------------->AGL3         --------->ANAC58 --------->AHL20(2)   --------->At4g35610   ----------------->AGL2       <---------ICU4   <------ZmHOX2a(1) ============================================================MADS_MADS<---------ICU4   <------ZmHOX2a(1)   agattaaatccggcatggccacagagctcaggctgttttgagagtaaccagaaagggaaacggacatggacatcatcacgaccgcatgaggaggaagagc  19092700                  --------->REM1(2)                 --------->ALFIN1               <---------ANAC58               <---------ANAC58               <---------ANAC46                                               <---------MYB46(3)          ----------->HVH21                                                <------MYB83      <---------ANAC58                                                     <------MYB46(1)      <---------ANAC58                         <---------TOE2(3)          --------->MYB55(2)     <---------MYB46(3)           <------ZmHOX2a(1)                       <---------MYB46(3)    <---------ANAC46            ------------------------>ANAC81           <---------AtMYB61       <--  <-----------RAV1(1) <------ZmHOX2a(1)      ---------->DOF2     ---------->DOF2           --------->MYB52(1)   attgttgtgggtgtgaagcgtgtaggagagggaagaggaagaagaggtaaaggaagagttgttttgagaaagtcatttggtggttttttgtactaaggga  19092800                                                                  <---------ANAC58  ------------>CBF                                 <-----------TBP                  <---------ANAC58 --------->YAB1                                 <---------AHL20(2)        <---------CCA1(2)       <-----------GT1                                 --------->AHL20(2)     ------>ZmHOX2a(2)       --------->YAB1                        --------->ANAC55(2)            <------ZmHOX2a(2)      --------->AHL20(2)                      <-----------GT1                  --------->GLK1(1)     --------->YAB1                --------->ICU4 --------->AHL20(2)     <---------ARR11(3)    --------->AHL20(2)                <---------YAB1 ----------->TBP        --------->ARR11(3)--------->AHL20(2)       <---           ----------->GT1    <---------AHL20(1)     <---------GLK1(1)  <---------AHL20(2) <-------TEIL --------ID1 <---------YAB1   --------->AHL20(1)     --------->GLK1(1)<----------DOF2    --------->YAB1   gggacaagaagacttgttattatttcacttaatatatatatagttcaaacttaagagatctctatctttcgtctttaaataaaaataacaatattcattt  19092900            <------ZmHOX2a(1)      <---------At4g35610      --------->At4g35610                           --------------->AtSPL8               --------->ARR11(3)  <-------GAMYB                                  <---------AtMYB61              --------------->AGL15 <------MYB46(1)                                 --------->DAG2                 <---------------AGL15 <------MYB83                          ------->TEIL --------------->AtSPL3    <-------TEIL <--------- --------->MYB55(2)               --------->At4g35610        ---------->ID1  --------->CCA1(2) <---------MYB46(3)     <------------CBF       ---------->DOF2    <----------DOF2      <---------TOE2(3) --------RAV1(1)--------->YAB1    <---------At4g35610 <---------SPL7        <---------ARR11(3)   tgttggttagatgaggaataatagaatattgtagtctgatgaatctatggaaaggtcgtacttgttctctttagtcaagatacatttttaagaaattgaa  19093000                                                  <---------YAB1                                                  <---------TOE2(3)                                                  <---------TOE1(3)      <-------GAMYB                                              <----------DOF2           <------MYB46(1)                      <---------YAB1      <----------DOF2               <---------MYB46(3)                    <---------ICU4     <---------ALFIN1                 <------MYB83                   <---------ATHB12  --------->ANAC58               <-----------RAV1(1)             <          <---------YAB1             --------->ANAC58          --------->AHL20(2)                 <--     ----------->GT1--------->YAB1  --------->ZAT18            <---------AHL20(2)       <---------YAB1 ---CBF   --------->ICU4            <---------ZAT18    ------------>CBF --------->MYB55(2)       <---   tggagacatgttataattcaaatcatgagaaccctaagcacacactttctttaagataacaatatttattttgttggttagactaagaacattatagtcg  19093100   ------>ZmHOX2a(2)  <------ZmHOX2a(2) --------->ARR11(3) <---------ARR14(2)                                                                            ------ <---------ARR11(3)                                                                    ------->PIF5 --------->ARR14(2)                                                                    <-------PIF5 --------->GLK1(2)                       --------->ANAC58                             --------->ATERF1(1) <---------AGP1                          --------->ANAC58                             ----------->RAV1(2) ------ZmHOX2a(1)               <---------At4g35610       ----------->GT1      --------->TOE2(3) -------TOE1(2)             <----------DOF2    --------->MYB46(3)   <---------AHL20(2)<------NtERF2 ---NtERF2             ---------->ID1<---------YAB1<---------MYB52(2)   --------->ANAC46     <-------   gaggatctatagaaagattgtatttgttctctttagatgatgctcgctaacaaacaaaccttgttaatatttaaacgaaaaccttggcccctgcgatggt  19093200           <-------MYC2           <-------MYC3              <---------REM1(1)                     <----------DOF2           ------->MYC2         <---------ANAC58                     <---------ANAC46         ------->TEIL           <---------ANAC58              <---------At4g35610 <---------ANAC58          ---------->DOF2       --------->GLK1(2)  <---------LBD16            ------ <---------ANAC58--------->ANAC58  <------MYB46(1)   <-----------HVH21--------->LBD16       --------- <---------ANAC46--------->ANAC58  <------MYB83 <---------ARR14(2) ------->TEIL      <---------ANAC58 --->ARR11(3)  <--------P------->GAMYB          <---------GLK1(2)<---------SPL7      <---------ANAC58 --AtMYB61 ------->MYC3--------->At4g35610 <----------DOF2    --------->At4g35610    ----------->RAV1(2)   cttgcgttttgaacgtggtaagcacaactgaaaggcttggtgaagctttggattctgtcatggaagctgtaccgggtctttggaatcgcctgcgatgcaa  19093300  Previous    Next  AGI:  At2g46495.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G28040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39757.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 19087326    to: 19092776    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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