Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                            <--------                                                                                           xxxxxxxxxx                                                                                          --------->GLK1(2)                                                                                          <---------YAB1                                                                                         --------->KAN4(2)                                                                                        <----------TaMYB80                                                                                        --------->GLK1(1)                                                                                        <---------KAN4(1)                                                                                        <---------GLK1(1)                                                                                        --------->KAN4(1)                                                                                       <xxxxxxxxxxxxx                                                                                       --------->ARR11(3)                                                                                       <---------ARR11(3)                                                                                       ---------->TaMYB80                                                                                       <---------ARR14(2)                                                                                       --------->ARR14(2)                                                                                       <xxxxxxxxxxxxx                                                                                       <---------KAN4(2)                                                                                      <------NtERF2                                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                             --------->MYB46(3)     <---------ANAC46 -------AHL20(2)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxx ------>AHL20(2)                                         xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxx -----------AGL15                                  <-------TEIL  ------->GAMYB     <---------LBD16  < ------DOF2                                      xxxxxxxxxxxxxxxx>smallRNA(i)   --------->DEAR3(2) <x ---->TOE2(3)                             xxxxxxxxxxxxxxxx>smallRNA(s)      --------->MYB46(3)<xxxxxx ---------->AGL15          --------->ANAC58      <---------GLK1(2)          xxxxxxxxxxxxxxxx>smallRNA(i) ------------AGL3          --------->ANAC46      --------->ARR14(2) <xxxxxxxxxxxxxxxxsmallRNA(i)   <x ------------AGL2          --------->ANAC58      <---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ->ARR11(3)         --------->ZAT2       <------ZmHOX2a(1)  <------ZmHOX2a(2)  --------->MYB52(1) <xx --ARR11(3)         <---------ZAT2       ==========================HOX2a_HOX2a--------->MYB52(1)xxxxx -GLK1(1)   --------->ARR11(3)        <---------LBD16   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<-------- -CCA1(2)   <---------ARR11(3)--------->MYB52(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------MYB46(3)   ttaattggataagagatgttcaagcttggaagcaacgatttcaggaatgcagattcacatggatcaaccgaaaacagaacaaaccggcggatattcttgc  19079000       <xxxxxxxxxxxxxxxxsmallRNA(i)      <xxxxxxxxxxxxxxxxsmallRNA(s)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxsmallRNA(si3) -ANAC58    <---------LBD16 xxxxxxxxxxxxx>smallRNA(fl3) xxxsmallRNA(s) xxxsmallRNA(i)            --------->AHL20(2) xxxxxxxxxxxxxxxsmallRNA(si3)        --------->ATHB12 xxxxxxxxxxxsmallRNA(i)    <---------AHL20(2)                                                  <<<<<< xxxxxxxxxxxxxxxxsmallRNA(si3)  --------->AHL20(2)                                             ------ xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------ICU4                            xxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->At4g35610 <-------- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->YAB1                     <---------At4g35610 --------- xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------YAB1 --------->YAB1       --------->ZAT2     <---------YAB1 xxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(2)----------->GT1      <---------ZAT2   --------->YAB1 -ANAC58 -------->P       --------->AHL20(2)   <---------YAB1        ---------->DOF2    <---------YAB1   caagagtcacttaccccagaatgaacaatttaaattttatgattacattccgattgtaatttcttcagccttacagctggaaaactcttgatcataataa  19079100             ----------->GT1 ----------->GT1                        <---------TOE2(3) <<<<<<<<<<<LFY             --------->AHL20(2)        ------->MYC3                                  < --->YAB1   ----------->GT1 <---------AHL20(2)        ------->MYC2                                  < x>smallRNA(se3)           --------->AHL20(2)  ---------->DOF2                                   <--- -ICU4     --------->ARR11(3)    --------->AHL20(2)   <-------MYC2       --------->MYB52(1)     <---- >YAB1     <---------ARR11(3)    <---------AHL20(2)   <-------MYC3   <---------YAB1       <----------DOF2   caatggaaaataagatgttaaaaaaaaaaaaaaatttatatataggttttaaagcacgttttagttttgttgtgataacgaaataagtctctcttttttt  19079200                                                            <---------AHL20(2)                                                     <---------At4g35610                                                     <------NtERF2                                                    ------>NtERF2                                                    <---------RAP2.3(1)                                                    <<<<<<<<<AtERF-5                                                    <---------ERF1                                                    <<<<<<<<<AtERF-1                                                    <<<<<<<<<AtERF-2                                                    <<<<<<<<<AtERF-3                                                    <<<<<<<<<AtERF-4                                                   <---------ATERF1(2)                                                   <---------DEAR3(1)                                                   <---------RAP2.6(2)                                                   --------->ATERF1(2)                                                   <---------RAP2.3(2)                                                   <---------RAP2.3(3)                                                   <---------ANAC46                                                  --------->ATERF1(1)                                                  --------->RAP2.6(3)                           -----   --------->MYB59                                <------NtERF2                                 ----- <---------MYB52(1)                       <---------HSFB2a(2)                                 ------- -------GAMYB                             --------->HSFB2a(2)<---------AHL20(2)               ------- -----------HVH21          <---------At4g35610  --------->ALFIN1    <---------ANAC58      --------->AtLEC2 ------At5g28300           --------->At4g35610  <---------DEAR3(1)  <---------ANAC58      ------>ZmHOX2a(1) -------GT1               ----------->HVH21    <--------P   --------->AHL20(2)     <----------DOF2   accgttaggcctatagaaagttttaggcctgatgcccaagtcttctcgagttggcggctaatttaaattgacttgttttgtttttctttgtcctgcaagc  19079300                                                <----------DOF2                                              ------>NtERF2                                              --------->LBD16                         <---------ANAC46                                              <------NtERF2                           <---------ANAC58                                             --------->DEAR3(1)           --------->At4g35610   <-----------GT1                   --------->ANAC58                     <---------At4g35610   --------->MYB52(1)                --------->ANAC58                 <-----------HVH21      ========  --------->AHL20(2)                 --------->ANAC46              <---------MYB52(1) <---------ANAC58  <---------AHL20(2)     <---------TOE1(3)--------->ANAC58       <---------ANAC58    <-------TEIL ---->YAB1               <---------TOE2(3)--------->ANAC46       <---------ANAC58    *TSS<----------DOF2 ---->TOE2(3)     <-----------------AG    --------->ANAC58 <---------ANAC58          --------->ABI4(2) -->ANAC58        <-----------------AGL1---------->DOF2    <---------ANAC58    --------->MYB52(1) -->ANAC58 <----------DOF2       --------->CCA1(2)      <----------DOF2 <-----------RAV1(2)  <-------   ttaattaactgggttttaaggcccattaaggttagatagacgaaacgccgcgttttgtctttcgttttcgtttgtcagatgaaacggtgcgttttttgtt  19079400           <-----------RAV1(2)          <---------MYB52(1)         <-----------HVH21                                                          --------->ARR14(2)         <-----------TGA1                                                           <---------ARR14(2)        --------->ETT(2)                                                           <---------RAP2.6(3)       <------NtERF2                                                              --------->RAP2.6(2)     <---------DEAR3(1)                ------>ZmHOX2a(2)                        --------->At4g35610  <---------MYB46(3)     --------->ANAC58                                       <---------At4g35610 <---------AtMYB61     --------->CCA1(2)                                 <---------ZAT18 ======================RAV         ------>ZmHOX2a(1)           --------->ZAT6 <-----------RAV1(2) ----RAV1(1)   <--------P--------->ANAC58       <---------TOE1(2)        --------->ZAT18--------->At5g28300   gcgatggtcgtcgtcaggtagagagagacgcgaagtcctgatcgctctctcaggtcttagccctaagactacgagtcgactcagccgaactgtgaatgca  19079500                               <----------DOF2                      --------->ICU4                              --------->ANAC58                  -                 <---------ANAC55(2)                              --------->ANAC58              -----                 --------->ANAC55(2)                     <---------ZAT18                       ------              <---------MYB52(1)                         --------->ZAT14                       ------ <---------YAB1  ----------->GT1     --------->ARR14(2)  --------->ZAT18   <---------ANAC46 ------->TEIL   gttttgatttcaatcccttaggtaattttgaaactttcggtttctcactcttctcgttgtgctctctcaagaaaatgttgtgaagcttgaaatgaatcct  19079600                                        --------->ICU4           ---------->DOF2          <------ZmHOX2a(1)       --------->ANAC58           <---------TOE2(3)                                              ----       --------->ANAC58       <----------DOF2                                                    <---       --------->ANAC46      ------>ZmHOX2a(2)                                       <---------MYB46(3) -------------->AtSPL8       ==============HOX2a_HOX2a             <-----------GT1<-----------RAV1(1) ->ZmHOX2a(1)               <---------YAB1                        <---------AHL20(2) <-----------RAV1(1) --->TOE1(3)               --------->ARR11(3)                    --------->AHL20(2)  <---------REM1(1) --->TOE2(3)               <---------ARR11(3)          <---------YAB1       <---------ANAC46  -------   tatctgtacaagtaaaagcagaaattgatgatctttgaggaacttattagactggttttgattcgaattttatctcttgtgtatttgttgttgctataag  19079700                          <---------ICU4                    ------>ZmHOX2a(2)                  <---------ARR14(3)                  --------->ARR14(3)                  <---------ARR14(2)                  <-----------ARR10        --------->LBD16                  --------->ARR11(3)      <---------ANAC46                  --------->ARR14(2)      <---------ANAC58    <----------DOF2<------ZmHOX2a(2)      <---------AtLEC2    <---------DAG2<---------ARR11(3)      <---------ANAC58 ----->ARR11(3)  <------ZmHOX2a(1)    <---------ANAC46 ------ARR11(3)<---------TOE1(2)      <---------ANAC58     <---------ZAT6            <-----------GT1 -->YAB1     --------->At4g35610      <---------ANAC58     ----------->GT1  --------->CCA1(2)  <-----   aactctctttttgttagcaggatcttagttatggctacttgcttgcgtggaatcacgaagagagttaatcttctacagagacgagtttatccatcgtgtg  19079800                                                        <---------ANAC46                                                    <--------ATHB1                                                    --------->ATHB12   --------->ANAC55(1)                                             <---------ARR14(2)        --------->ANAC58                                             --------->ARR14(2)        --------->ANAC55(2)                                         <---------LBD16<---------ANAC58           --------->YAB1        <---------ANAC58       --------->ARR14(2)  <---------YAB1      <---------ANAC55(2)        <---------ANAC58       <---------ARR14(2)  <---------ATHB12    --------->ANAC58 <---------At4g35610     ------->TEIL--------->ARR14(2) <---------ANAC58      <----------ID1       <- ----AtMYB61 <---------YAB1<-----------------AGL3  --------->ICU4      --------->ANAC46  --------->TOE1(3)   gtcatctaattcgtgatgatagagatgaaactaaatctggttcttcggatacaatgattcgtgaagtcttagcacgtaatgggactaataagcttagctc  19079900  Previous    Next  AGI:  At2g46460.1    Description:  nucleic acid binding. similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G47497.1); similar to 52O08_2 [Brassica rapa subsp. pekinensis] (GB:AAZ67547.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) Range:  from: 19078609    to: 19079091    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g46470.1    Description:  OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE). Identical to Inner membrane protein OXA1-like, mitochondrial precursor (OXA1L) [Arabidopsis Thaliana] (GB:Q9SKD3); similar to OXA1 (Oxidase assembly 1), P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] (TAIR:AT5G62050.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69547.1); contains InterPro domain 60 kDa inner membrane insertion protein; (InterPro:IPR001708) Range:  from: 19079385    to: 19082195    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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