Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      <---------AHL20(2)    --------->AHL20(2)                                                  <---------ANAC58 ---------YAB1                                                          <---------ANAC58 ------->AHL20(1)                                                  <---------ANAC58 --------AHL20(2)   >>>>>>>>>ARR1                       <---------AtMYB61 --------AHL20(1)   >>>>>>>>>ARR2            <------MYB83          <---------ANAC58                 < ------>AHL20(2)  <---------YAB1             <------MYB46(1)      <---------STY1(2)                 - ---TOE2(3)       <---------TOE2(3)         --------->MYB59<---------AtMYB61                 <------ZmHOX2a(1)   ttatatttaaacacatagctaagattgtttactagagagacttaattaggtctctctattggtggtctagcttggcttcactctcgaattgaagaggaac  19072400                                                                        --------->ATHB12                                                                       <---------YAB1                                                                       --------->ICU4                                        <-------GAMYB                <---------ICU4                                 --------->ANAC55(2)                 --------->YAB1                                 <---------ANAC58                  --------->AHL20(1)                                 <---------ANAC55(1)            --------->AHL20(2)             <-----                                 <---------ANAC58 --------->MYB52(1)--------->ICU4             ------                           <---------YAB1<---------MYB52(1)    --------->YAB1                  <----- -------MYC3         <------ZmHOX2a(1) <-----------RAV1(1)    --------->AHL20(2)               ------ ------>MYC3  <----------DOF2    <---------ANAC55(2)--------->ICU4--------->YAB1<---------AHL20(1)   aacgtgtttgtttagtctttttaggacttacaattacgtctctgttgtttagtaacgatggcaaataaaaataatgatttagtatatttgaacatggtcc  19072500                                                              <---------YAB1                                                           <---------YAB1                                                           <---------AHL20(2)                                                        --------->ARR14(2)                                                        <---------ARR14(2)          ----------->GT1                           <---------LBD16             ---------->DOF2   --- ------------AGL1                                  <---------ANAC58        ----------->GT1       <--- ----------->AGL1                                  <---------ANAC46     <---------ANAC46        ----- ------------AG---------->DOF2----------->GT1      <---------ANAC58     <---------AtLEC2      ------- ----------->AGL2   <----------ID1              <---------GLK1(1)  --------->MYB52(2)        --------   caaatgggcaagttgtaaaaagaagacaagtagagaaaattcaaaattggatttcgtggatattattgtaagttgcagggaaaaaagagtgagactgccc  19072600                                                                                 <---------YAB1                                                                              --------->ICU4                                                         <-----------GT1    <---------ICU4                                                        <-----------GT1     <--------HAHB4                                                     --------->ATHB51       --------->YAB1                                                     <--------HAHB4        <---------ATHB12                                                     -------->HAHB4        --------->ICU4                                                     <--------ATHB1        <---------YAB1                       -------->P                    <---------ICU4    <---------AHL20(2)                    <---------ANAC58                 --------->YAB1 --------->AHL20(2)                    <---------ANAC58                --------->AHL20(2) --------->AHL20(2) --->NtERF2        --------->At4g35610              --------->ICU4  <---------AHL20(1) ------ALFIN1--------->ATHB12                       <---------YAB1  --------->AHL20(1) ---->MYB46(3)     <---------At4g35610              <---------ATHB51<---------AHL20(2) -->PCF2    --------->ICU4                        --------->YAB1 --------->YAB1<---------ICU4 ->ZAT18  --------->YAB1                 --------->MYB46(3)   <----------DOF2 <---------YAB1---------   caccgtagactaaaatgatttagcttaccactctcactctgcatccacagtttaataattacccctttaatattttaatcattattttagtagaccaaaa  19072700                                         <---------TOE2(3)                                         <---------TOE1(3)                                       ---------->DOF2                                    <-------GAMYB                    <---------ARR11(3)                                   <------MYB46(1)                   <---------ARR11(1)   <---------YAB1                                   <------MYB83                      --------->ARR14(2)  --------->AHL20(2)                                   <---------MYB46(3)               <---------CCA1(2)    *TSS     <---------ZAT6               <---------AtMYB61               --------->YAB1       --------->ICU4   <---------ANAC46              <--------P                      <---------ATHB12--------->MYB46(3) --------->ZAT14               <---------ZAT6                   ------>MYB46(1)<---------ALFIN1 <---------ZAT14               --------->ALFIN1                 ------>MYB83   ----------->RAV1(1) >AtMYB61                      <-----------RAV1(1)              -------->P  --------->ANAC46   ctgtttagtgttgaaacttgtgcatccacatgagtgttggttaaaggttgagaacatcgatttgccaaccatatctcacagccacagccatttttattct  19072800                                                                                                    -                                                                                                    -                                                                                                    -                                                                                      --------->ARR11(3)                                           --------->HSFB2a(2)                     --------->AHL20(2)                                           <---------HSFB2a(2)                     <---------AHL20(2)                                           <---------HSFC1(1)                     --------->AHL20(2)<                                           --------->HSFC1(1)         <---------------AtSPL3   <-----                                  --------->TOE1(3)                  <---------ANAC46 <---------AHL20(1)                                  --------->TOE2(3)                  <---------ANAC58 <---------AHL20(2)                            <---------ALFIN1             <---------ZAT18          --------->YAB1<----                            --------->AtMYB61            --------->ZAT18  <---------LBD16      ------                      --------->ZAT6     <---------------------WRI1  <---------ANAC58 --------->AHL20(1)   ctctcggtctctcttctcagtctctcactaccacagccttaagttcgagaagaccgaagtggacttcattttcttgtacgggaattaaaatattgcagat  19072900                                                                                                  --- -------->bZIP60(1)                                                                           <------ -------->ETT(2)             ----------->GT1                                            <---------YAB1 -------->ANAC46            <------ZmHOX2a(1)                                       <---------ANAC58 ---------bZIP60(1)   --------->At4g35610                                           <---------ANAC58< ----ARR14(2)       --------->ATHB12         <-------TEIL        <-----------GT1    <-------GAMYB---- -----WOX13(1)      --------->YAB1       --------------->AtSPL8<---------WOX13(1)  <------MYB83  <--- --->ARR14(2)     ------->TEIL          <-----------RAV1(2) <---------YAB1         <------MYB46(1)<--   tgacgacatatactaacatgaatcatcggaggagtaaatttgccaggtacttcttcgaagttttgattaactactatttcatatttggttgtgatagtga  19073000 ------>ATHB12                                                                   --------->At4g35610 ---ZAT6                                                                    --------->HSFB2a(2) ---------YAB1                               --------->DAG2                 <---------HSFB2a(2) ----->ICU4                 <-------GAMYB   ---------->DOF2                <---------LBD16 ------YAB1                 <---------At4g35610 <---------ZAT6             <---------ANAC46   xxxxxxx -------ICU4<------ZmHOX2a(1)     ----------->GT1       <------ZmHOX2a(1) <---------LBD16  <<<<<<<<<TAC1   tcattgttgatacaggatagatagtatgggagttgatggaaaattgaaaagtgttagaggacgcttgaagaaggtttacgggaagatgaaaacactcgaa  19073100                                   <----------DOF2                                  <---------ANAC58                                  <---------ANAC58                                  <---------ANAC46                               <--------P                              <-------GAMYB                          <---------ANAC46                          <---------AtLEC2                          <---------ANAC58                                  <---------GLK1(2)                          <---------ANAC58                               <---------WOX13(1)       <--                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     ---------->ID1        --------->ARR11(3)                      <---------ANAC58                         <-----------GT1        <---------GLK1(2)                     --------->At4g35610                     <------------------------ANAC81<--------                     <---------At4g35610          <----------DOF2      --------->ATHB12     <--------     <------ZmHOX2a(1)<---------ANAC58            ------>ZmHOX2a(1)   <---------YAB1  <---------ARR11(3) xxxxxxxxxxxxx>smallRNA(si3) <---------MYB46(3) ------>ZmHOX2a(2)   <----------DOF2  <---------RVE1(1)   aactggaggaagaccgtcttgttagcttgcgtggttgctttggctattgatcctttgtttctgtttatccctttgattgattctcagagattttgcttca  19073200                                                    <-------MYC3                                                    ------->MYC3                                                    <-------MYC2                                                    ------->MYC2                                                   --------->ANAC58      --------->ANAC58                    <---------YAB1                      <---------ARR11(3)      --------->ANAC58                  <----------DOF2                       --------->ARR11(3)      --------->ANAC46                 <-----------------AGL3             --------->YAB1 <---------ETT(2)                     <---------TOE1(2)                  <---------AHL20(2) --------DOF2                     --------------->AtSPL8                 --------->AHL20(2) -ANAC58                          --------------->AtSPL3         <-----------GT1 -ANAC58                     <-----------HVH21     --------->ANAC58--------->ANAC46     ------->GAMYB   ctttcgacaagacacttgtagcagtagtttgtgtcattcgtacttttattgacacgttctatgtgattcacatcatttattatcttataaccgagaccat  19073300  Previous    Next  AGI:  At2g46450.1    Description:  ATCNGC12 (cyclic nucleotide gated channel 12); cyclic nucleotide binding / ion channel. Identical to Probable cyclic nucleotide-gated ion channel 12 (CNGC12) [Arabidopsis Thaliana] (GB:Q8GWD2;GB:Q9SKD5); similar to ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3) [Arabidopsis thaliana] (TAIR:AT2G46430.2); similar to ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G46430.1); similar to ATCNGC11 (cyclic nucleotide gated channel 11), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G46440.1); similar to unnamed protei Range:  from: 19072789    to: 19075437    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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