Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       --------->MYB52(1)                                                                                    <---------AHL20(2)                                                                                 -------->HAHB4                                                                                 <--------HAHB4                                                                                 --------->ATHB51                                                                                 <---------ICU4                                                                                 --------->YAB1                          <----------DOF2                                        <--------ATHB1                          <---------DAG2                                        --------->AHL20(2)            <-----------GT1                                                     <---------YAB1         --------->ANAC55(2)                                                    --------->ICU4         <---------ANAC55(2)                                                    <---------ATHB51    --------->YAB1     <---------ARR11(3)      <------ZmHOX2a(1)              --------->YAB1    -------->HAHB4     --------->ARR11(3)     <----------ID1                --------->AHL20(1)    <---------ICU4 --------->ZAT14            ----------->GT1               --------->AHL20(2)   <---------ATHB12---------->DOF2    --------->YAB1               ----------->GT1 <---------YAB1<---   --------->ICU4  <---------ZAT14   --------->ICU4     <---------YAB1     --------->YAB1       -----   tgcaaatgattatgtaaccagtaaagagctttatgtgaaataatcaataggaaaaattcttatagagtttagttaaaaaataataattaatggagacatt  19068500                         <---------MYB55(2)                         --------->MYB46(3)                      --------->MYB46(3)                    <---------ALFIN1                    --------->AtMYB61                  ----------->RAV1(1)                 --------->ANAC46                 <---------ALFIN1          --------->GLK1(2)          <-----------ARR10   --------->At5g28300                                 <---------CCA1(2)         <---------GLK1(2)<---------ALFIN1                                  ---------->DOF2         < ------AHL20(2)  --------->AtMYB61                                 ------>ZmHOX2a(1)        <-------- ---->AHL20(2)  --------->MYB46(3)      <-----------GT1 <----------DOF2 <----------DOF2   --------->AHL20(2)   aattttagcgagaatctcaccaccacaaccactgtaaatgttttgctatccaaaaacactttctaagtcctaagctttaaaagcatctctcattaaacaa  19068600                                                                      <---------ANAC58                                                                      <---------ANAC58                                                                --------->ZAT2                          --------->STY1(2)                 --------->PCF5                        <--                          <---------STY1(2)               <---------MYB46(3)                  -------                    <---------ZAT14                      <---------AtMYB61                    <------ -----------GT1     --------->ZAT18                   <---------AtMYB61               ----------->HVH21 ---GT1       <------ZmHOX2a(1)              <---------CCA1(2)  <---------ZAT2  --------->HSFB2a(2)   tttttccacatagttaggagagtttactagctagagacggtagacttatctctctattggtggtccagcttggcttcactctctcgaattgacgagttta  19068700                                                                                      --------->ANAC58                                                                                      --------->ANAC58                                                                                     --------->SPL7                                                           --------->ATHB12        <---------SPL7                                                          --------->ICU4         <---------------AtSPL3                      <---------ANAC58                    <---------YAB1         <---------------AtSPL8                      <---------ANAC58                  --------->YAB1 <---------AHL20(2) -------ZAT6         --------->MYB59                    <---------ICU4--------->ARR11(3) -->ZAT14    <----------DOF2                           --------->ICU4 <---------AHL20(1)            - ---ZAT14 ------>NtERF2              ---------->DOF2 --------->YAB1   <---------ARR11(3)            <   gtcttattacgacgactttcaattgggtctgtattgactaaaagatggccaactaaaataatgatttaagtatatatttgaagatggtacgaaatgggca  19068800                                                                                      ------>NtERF2                                                                                     <---------ALFIN1                                                                                    <------NtERF2                                                                                    --------->MYB46(3)                                                                                    <---------MYB55(2)                                                                                    <---------ABI4(2)                                                                                   <---------ATERF1(1)                                                                                  --------->RAP2.3(3)                                                                                  --------->PCF2                                            <---------YAB1                     <---------ARR14(2)                                           <------------CBF                    --------->ARR14(2)                                         <---------YAB1                    --------->At4g35610      <     ---------->DOF2                     <---------AHL20(2)                <---------At4g35610     <- ---------->GT1                       --------->ICU4        ---------->DOF2--------->ZAT14         -- ---------ANAC46 <--------P      ----------->GT1    <---------REM1(1)      <---------ZAT14        <--   tgttgtgaaaagaagacaggtagagaaattggattttgtgaatattattgtaagttgtagggcaaagagagtgagactgcagagcccccaccgtagacga  19068900                           -------->P                        <---------ANAC58 -----------GT1         <---------ANAC58 --------ZAT14         <---------At4g35610 ------->ZAT14         --------->At4g35610                                          --------->ANAC46 --------DOF2   <-------TEIL      *TSS       <-------TEIL   ---------->DOF2        --------->MYB46(3)   ctttactgtctcttcaagtccatttagcttaccactctgcatccacatacatgagtctgtgttaaagctggagaacatcgatttgcccaccatttctcac  19069000                                                                                   <---------HSFC1(1)                                                                                   --------->HSFC1(1)                                                                                   --------->HSFB2a(2)                                                                                   <---------HSFB2a(2)                                                                                 <-------------------                                                                            <---------MYB52(1)                                                                           <----------DOF2   --------->ANAC58                                                   <---------ALFIN1   --------->ANAC58                                                 <---------ALFIN1             ---- ---------->DOF2  <---------AHL20(2)    --------->HSFB2a(2)         ----------->RAV1(1)          <---   tgccaaagccatacccatatttattctctctcggtctctcttctcggtctctcttctcagtctctcactcccacagcctttagttcgagaagaccgaagg  19069100                                                                                       <---------ANAC46                                                                                   --------->HSFC1(2)                                                                               <------MYB46(1)                                                                               <------MYB83                          <---------AHL20(1)                                  --------->MYB111(1)                       --------->AHL20(2)                                     --------->MYB59                       <---------AHL20(2)                                     --------->MYB46(2)                      --------->AHL20(2)                                      --------->MYB111(2)          <---------------AtSPL3          ----------->GT1                    <---------MYB55(1)         <---------ANAC58 <---------AHL20(2)                                <<<<<<<<<MYB98         <---------ANAC58 --------->ARR11(3)                      ----------->GT1  <---------HSFC1(2) --WRI1  <---------ANAC46 --------->AHL20(1)                     <------ZmHOX2a(1) <---------At4g35610 ----->ZAT18          --------->YAB1<---------WOX13(1)        <---------At4g35610<--------P     <---- ------ZAT18  <---------LBD16    <---------YAB1        ------->TEIL         <---------MYB52(1)-------   ggacttcattttcttgtacgggaattaaaatattgaagattgacagataaaaacatgaatcttcagaggagaaaatttgttaggtagcttcttggaattt  19069200                                                               <---------ARR14(2)                                                               --------->ARR14(2)                                                               --------->ARR11(3)             <------                                                               <---------ARR11(1)             <------                                            <---------DAG2     <---------ARR11(3)        <---------ANAC55(2)                                            <----------DOF2   <---------CCA1(2)         <---------LBD16            <---------TOE2(3)            <-----------GT1    --------->YAB1            <---------SPL7            >>>>>>>>>MYB98               <---------AHL20(2)<---------YAB1           <---------------AtSPL3 -----AHL20(2)                   --------->AHL20(2)     <---------ZAT6         <---------ANAC58 -->ICU4   <-----------GT1       <---------AHL20(2)     --------->ICU4         <---------ANAC58     -   ttatgaacaagtttaacatagcttcaatctagtatttttatatttacttttggcagtagtgatcatatcttgttgatacaggcttgatagtacgggagtt  19069300                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                 <---                                                                                                <----                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                               --------->At4g35610                      xxxxxxxxxxxxx                                          --------->HSFB2a(2)                           <---------ANAC58           --------->DAG2                 <---------HSFB2a(2)                          <---------At4g35610 -GAMYB   ---------->DOF2                <---------ANAC46                              --------->At4g35610 ---At4g35610 <---------ZAT6             <---------LBD16    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <----- ---------->GT1       <------ZmHOX2a(1) <---------LBD16  <<<<<<<<<TAC1 <------ZmHOX2a(1)<---------ANAC58   gatggaaaattgaaaagtgttagaggacgcttgaagaaggtttacgggaagatgaaaacactcgaaaactggaggaagaccgtcttgttagcttgcgtgg  19069400  Previous    Next  AGI:  At2g46430.1    Description:  ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3); calmodulin binding / cyclic nucleotide binding / ion channel. Identical to Probable cyclic nucleotide-gated ion channel 3 (CNGC3) [Arabidopsis Thaliana] (GB:Q9SKD7;GB:Q9XFS1;GB:Q9ZPK1); similar to ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT1G01340.1); similar to CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1), calmodulin binding / cation channel/ cyclic nucleotide binding / inward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT5G53130.1); similar to ATCNGC13 (cyclic nucleotide gated channel 13), c Range:  from: 19065367    to: 19068509    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g46440.1    Description:  ATCNGC11 (cyclic nucleotide gated channel 11); calmodulin binding / cyclic nucleotide binding / ion channel. Identical to Cyclic nucleotide-gated ion channel 11 (CNGC11) [Arabidopsis Thaliana] (GB:Q9SKD6;GB:Q682T0); similar to ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3) [Arabidopsis thaliana] (TAIR:AT2G46430.2); similar to ATCNGC12 (cyclic nucleotide gated channel 12), cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G46450.1); similar to ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G46430.1); similar to unnamed protein product Range:  from: 19068934    to: 19071954    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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