Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                             <-------                                                                                           <------ZmHOX2a(2)                                                                                          <---------ARR14(2)                                                                                          --------->ARR11(3)                                                                                          <---------ARR11(3)                             ---------->DOF2                                              --------->ARR14(2)                           <------ZmHOX2a(2)                                         --------->LBD16                  --------->ARR11(3)         ---------->DOF2                        <---------HSFB2a(2)                  <---------ARR11(3)   ------>MYB83                                 --------->HSFB2a(2) ------>DOF2     <---------CCA1(2)     ------>MYB46(1)                       <---------AHL20(2) ----- --->AtMYB61  --------->TOE2(3)       ----------->RAV1(1)      --------->ANAC55(2) <---------LBD16   aaagtcagactccaaatctaaatctttggatcaaagttaccaacaaaaaaagatgaaattggtttatgtattcaaacatataatctccagaagatcgaga  19049700                  --------->ANAC55(1)                  --------->ANAC58                  <---------ANAC55(2)                  --------->ANAC55(2)                  --------->ANAC58                 <---------LBD16               <---------ARR14(2)             --------->ANAC46           <------NtERF2     --------->YAB1   --------->ANAC58       --------->WOX13(1)  <---------HSFC1(2)        <-------TEIL      --------->ANAC58  ------>ZmHOX2a(1)  --------->HSFC1(2)  <------ZmHOX2a(2)      ------->GAMYB    ----------->RAV1(2) ->HSFB2a(2)   --------->ARR14(2)   <----------DOF2           --------->YAB1 --HSFB2a(2) ----------->HVH21     --------->TOE1(3) --------->MYB52(1)             <---------YAB1 ----->DOF2----------->RAV1(2)     --------->TOE2(3) ---------->DOF2------>ZmHOX2a(2) ---------->DOF2   aagaagcttagtcgcctgatacggatcaaattcataacctttatcaacacacaaataaaggcaatcctgatccatcaacgaagactatgaaagaacacaa  19049800                                                                                                    -                      <---------ANAC46                                                             --                   <----------DOF2                                                                 --                  <---------ANAC58                                                                ---                  <---------ANAC58                                                              -----             <---------MYB46(3)                                                          ---------->DOF2         <---------TOE1(3)                                                             ==============         <---------TOE2(3)                                                             <------ZmHOX2a(2)       ---------->DOF2<---------ANAC58            <-----------GT1              --------->LBD16  <----      --------->AHL20(2)                  <----------ID1                     ========================      <---------AHL20(2)                 --------->DAG2                      ------>ZmHOX2a(2)-------   --------->WOX13(1) <---------ANAC58 ---------->DOF2              <---------ARR14(2)--------->ARR11(3)   <---------------AGL15 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->ARR14(2)<---------ARR11(3)   attttcaattaaaggttgttcctttcgtgcctcaatgtttcaaaaggccaaattactaactcatcaagagtatttgtgatccgaataagatcaaaggagg  19049900                                                                 <---------MYB59                                                                 --------->AtMYB61                                                                 --------->MYB46(3)                                                              ------->GAMYB                                                         ------>ZmHOX2a(2)                                                         ==================================HOX2a_HOX2a                                                        <------ZmHOX2a(2)                                                        ===================================HOX2a_HOX2a    <---------ALFIN1                                   <---------ARR11(3)  ----------->RAV1(1)                                  <---------AGP1 -------->ZAT18                                        --------->AGP1 ------->ANAC58                                        --------->ARR11(3) ------->ANAC58                                   --------->CCA1(2)                        --------->ANAC55(2) ------>At4g35610                                <---------ARR14(2)                     --------->GLK1(2) ---->ATERF1(1)                              --------->YAB1--------->MYB52(1)           --------->ARR14(2) ==HOX2a_HOX2a                    --------->DAG2 --------->ARR11(3)------>MYB83         <---------ARR14(2) --ZmHOX2a(1)                    ---------->DOF2 <---------ARR11(3)------>MYB46(1)  <------ZmHOX2a(1) ==HOX2a_HOX2a            <------ZmHOX2a(1) <---------ATHB12 --------->MYB46(3)    ----------->GT1<-- -->ALFIN1                =====================================HOX2a_HOX2a ---------->DOF2 <---------ANAC55(2)   agcgcaacacatgaaaaattgtgaagaaggagagaaaaagcagccaatgaagatatagatctaacgaccaaacaagagaaagagaaggagaatacgtttt  19050000                       <------NtERF2                      --------->RAP2.6(2)                    <------NtERF2                   ------>NtERF2                   <---------ATERF1(1)                  <---------bZIP60(1)                  --------->O2                  --------->ANAC58                  <---------ATERF1(2)                  --------->ATERF1(2)                  <---------DEAR3(1)                 <------NtERF2                 --------->ATERF1(1)                ------>NtERF2                <---------ATERF1(1)               ----------->HVH21               --------->DEAR3(1)               <---------DEAR3(1)                              --------->At4g35610              <------NtERF2                               <------NtERF2              --------->ATERF1(1)       ------>NtERF2     ----------->HVH21             <---------RAP2.3(1)        --------->LBD16<---------PCF2             <---------ATERF1(1)       --------->DEAR3(1) <---------SPL7             ------>NtERF2           ------>NtERF2    <---------SPL7            <---------DEAR3(1)       --------->LBD16--------->ALFIN1           --------->At5g28300           --------->SPL7       <---------At4g35610<-----------HVH21  <-----------------AGL1         ----------->HVH21   <---------At5g28300   <---------MYB52(1) <-----------------AG      ------->TEIL--------->ANAC58  --------->DEAR3(1)----------->TCP11(1)    ----------->GT1    ----      <---------ARR14(2)    <-----------GT1   <---------ARR14(2)    --------->ANAC46         <-------      --------->ARR14(2) --------->WOX13(1)  <---------GLK1(1) <---------At4g35610   --------->YAB1      --------->GLK1(2)<---------At4g35610 <------ZmHOX2a(1)--------->SPL7<----------DOF2<----------DOF2 -------AtLEC2--------->RAP2.3(1) <---------ATERF1(1)<---------MYB46(3)<---------ALFIN1 <---------ICU4   gcaagacgaatccgacggcgacggcagcaattaccgctccgccgaggataaccggtgggccggacagcaaactccactttcggtaaatcatcttttctcc  19050100                                                                                                  <--                                                                                           --------->At4g35610                       <---------ANAC58                                                    --------->ZAT2                   --------->HSFC1(2)                         --------->ICU4               <---------At4g35610             <---------LBD16     *TSS                       --------->YAB1                 <---------ZAT2            --------------------->WRI1                     <---------YAB1             --------->HSFB2a(2)       <<<<<<<<<TBF1<----------DOF2                  --------->GLK1(2)                <---------HSFB2a(2)    <<<<<<<<<TBF1  <---------HSFC1(2)               <---------GLK1(2)                 --------->HSFC1(1) <<<<<<<<<TBF1     --------->HSFB2a(1)              <---------ARR11(3)                <---------HSFC1(1) -->ZmHOX2a(1)     <---------HSFB2a(1)     <---------ARR14(2) <---------YAB1    <-----------ARR10<--- ----GT1  <<<<<<<<<TBF1<---------ANAC58------>NtERF2--------->ARR11(3)       <---------GLK1(2)   <---   ttcttcttcttcttcttcggaactttcgttttcgtcttctccgactatctgaaagattcttatgatgatgaaatcgacagagtctcttctcgaagctggg  19050200                                                                              <---------AHL20(1)                                                                              --------->AHL20(1)                                    --------->ARR14(2)                        <---------AHL20(2)                                    <---------ARR14(2)                       --------->YAB1                                --------->YAB1                               <---------AHL20(2)                               ----------->TGA1                          --------->ICU4 --------DOF2                --------->YAB1               --------->DAG2 --------->AHL20(2)       <-- ------ANAC58                <---------ICU4              ---------->DOF2 <---------AHL20(2)      ---- ------ANAC58               --------->ICU4  <----------DOF2   ----------->GT1--------->AHL20(2)  <---   cttgatagtttttatctgggctcatggcccataatgacgatatgttcttttcttagacaaaaagttgtaaatgaaaaaattatattcttttgactggaat  19050300                                                                             <----------DOF2                                                                             <---------DAG2                                                                  <---------ICU4                                                                  --------->YAB1           <---------ANAC58                                       --------->ATHB12           <---------ANAC46                                       --------->ATHB51           <---------ANAC58                                       <--------ATHB1      --------->ZAT6                                             <---------ATHB51    <-----------GT1                                              <---------ATHB12 <---------ICU4                                                  --------->ICU4 -------AHL20(2)                                <---------AHL20(2)-------->HAHB4             -------- ----->AHL20(2)                             <----------DOF2      <---------YAB1             <-------- ------AHL20(2)                             <---------DAG2    ------>ZmHOX2a(1)    ---------->DOF2   taatttttacactgcttgaaaatttgaaagatggaagagttttccactttttaatctgttcatcctaataattgcatcacttttacaaagcgttttcata  19050400                                                        <-----------GT1                                          --------->AHL20(2)                                          <---------AHL20(2)    --------->YAB1                       <---------AHL20(2)                                   ------>ZmHOX2a(1)   <---------ATHB12           <----------DOF2 <---------ICU4   --------->DOF5.7(2)     --------->AHL20(2) --------->WOX13(1)        <---------ARR11(3) --------->YAB1  <----------DOF2<-----------GT1  <------ ->YAB1                    --------->ARR11(3)<---------ATHB12 --------->TOE2(3) --------->TOE1(3) -YAB1        ----------->HVH21          --------->AHL20(2)   --------->TOE1(3) --------->TOE2(3) <--   agtcaatcatactaatgtgacatttgaaatgtctttctatcaatttaatcataagaattaacaactttaactcacaaataaaccttatataaaatccttt  19050500                                                --------->YAB1                                            <---------ICU4                                           <---------YAB1              <---------------AtSPL8       --------->ICU4              --------->DAG2             --------->YAB1                                       <------          --------->YAB1                <---------ATHB12               --------->YAB1   --------->ANAC55(2)   --------->AHL20(2)                 --------->GLK1(1)   --------->ZAT2                ----------->GT1   <---------AHL20(2)                 <---------GLK1(1)   --------->At4g35610           <---------ANAC55(2) ----DOF2<---------YAB1     --------------->AGL15         <---------ZAT2  ---------->DOF2     ------- --------DOF2---------->DOF2<---------------AGL15         <---------At4g35610<----------ID1------->TEIL   ctttattaattgtcataaagtacaatccaacttcatagggaaatcataattcataaaccctgctgaaaaacaatgaaaaaggccaaaatcatgtaacttt  19050600  Previous    Next  AGI:  At2g46390.1    Description:  unknown protein Range:  from: 19049374    to: 19050133    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g46400.1    Description:  WRKY46 (WRKY DNA-binding protein 46); transcription factor. Identical to Probable WRKY transcription factor 46 (WRKY46) [Arabidopsis Thaliana] (GB:Q9SKD9); similar to WRKY53 (WRKY DNA-binding protein 53), DNA binding / protein binding / transcription activator/ transcription factor [Arabidopsis thaliana] (TAIR:AT4G23810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39738.1); similar to putative WRKY transcription factor 30 [Vitis aestivalis] (GB:AAR92477.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) Range:  from: 19050487    to: 19051899    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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