Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <---------AHL20(2)                                                                             --------->ARR11(3)                                                                             --------->AHL20(1)                                                                             <---------ARR11(3)                                                                             <---------AHL20(1)                                                                        <---------YAB1            ------>ZmHOX2a(1)                                           --------->ICU4    --------->YAB1                                                    <---------ICU4    --------->AHL20(2)    <----------DOF2                            --------->ICU4 ------TOE2(3)           <---------ANAC58                            <---------YAB1 ----->DOF2<---------MYB59<---------DAG2                           --------->YAB1 ----AHL20(2)            <---------ANAC58  --------->MYB52(1)     <------ZmHOX2a(2)   --------->ZAT6 --->AHL20(2)  --------->ZAT6 <---------ANAC46               ------->TEIL  ------->TEIL          ----   aagaaataatattcctaacacaagttggcttttcgtaaactaaacttacggtattgttttatgcatcgatcataatgaatattttaaaacactaaaacat  19040500                                              --------->AHL20(2)                                           <----------DOF2                    <-------MYC3           ------>ZmHOX2a(1)                   --------->ANAC58                    ------->MYC2        ---------->ID1                         --------->ANAC58                    <-------MYC2      <------MYB46(1)               <------NtERF2   --------->ICU4         --------->DAG2               <------MYB83 --------->AHL20(2)          ----------->GT1        ---------->DOF2              <---------AtMYB61   <---------TOE2(3)<---------ARR14(2)        < ------->GT1        ------->MYC3    <---------WOX13(1)  ---------->DOF2  <------ZmHOX2a(1)  <--------   ggttaaaaaaaaaagtaatccacatgcgattgttttggattggtccttttaaataaactaaagttttggcagagaggaaccaagtaaaaatgggcattat  19040600                       --------->ARR11(3)                                                    --------                       <---------ARR14(2)                                                   ---------           <---------ICU4                                                    --------->AHL20(2)  ----          ------>ZmHOX2a(1)       <----------DOF2                       --------->AHL20(2)<---------- ---------TOE2(3)      <---------ARR11(3)                           ----------->GT1     ------------- --DOF2  <---------MYB59   <-----------GT1                       --------->ICU4    <---------TOE2(3)   ctaagaatggtcctaattccaagaagatattacactcttttacagattggacccaaacactcatgtgaagatgaaaaaataaactaagaatacaaaaaga  19040700                                 ---------->DOF2                 --------->RAP2.6(3)                              <------NtERF2                     <-----------GT1                            <---------DEAR3(1)                  --------->MYB52(1)                       ------>ZmHOX2a(2)                       ----------->HVH21                     <---------ARR14(2)                       <---------MYB52(2)     ---------->DOF2 --------->ARR11(3)                      --------->ANAC58    --------->AHL20(2)<------ZmHOX2a(2)                      --------->ANAC55(1) ---------------->ANAC81  <-----------HVH21                  --------->ANAC58 ->DOF2              <---------ARR11(3)                      --------->ANAC46 ------->GT1         --------->ARR14(2)                   <-------TEIL   --------->ZAT6             < -----AGL15         --------->GLK1(1)            --------->CCA1(2)<------------MYB.PH3(1)          <- ----------->ANAC81 <---------GLK1(1)  ---------->DOF2   --------->CCA1(2)                         <-   agaaaataaaagaaaaaatcagagatcccgtcggagaaagaaaaagagaagatagagagatacaagtaacggcttccactaatctttcgccttctacatt  19040800           ------------>ATHB5          ------------>CBF       --------->DEAR3(1)   <---------ZAT2   <---------At4g35610                 <---------GLK1(2)          --------->ANAC58   --------->ZAT2                     <---------At4g35610         --------->ANAC46   --------->At4g35610                <---------ZAT2              --------->ANAC58         <--------- ---------At4g35610        --------->AHL20(2)         <----------DOF2                <----------DOF2 ----------RAV1(1)        ----------->TBP  <----------DOF2      <-----------GT1      <---------DAG2 ----------GT1<---------DAG2          --------->At4g35610      *TSS     <----------DOF2  <-----------GT1   tttgctgctccgtccaatttttgtgtctataaaataagacagcttctttctcttgactttccaaattcactcaactttctctcactccttttttctctct  19040900                    --------->ANAC58 --------->ARR14(2)                    --------->ANAC58 <---------ARR14(2)                 --------->ZAT2    <---------TOE1(2)                                      <---------ARR11(3)                 <---------ZAT2    <---------TOE2(2)                    ---------->DOF2   --------->ARR11(3)            <---------ZAT14        ----------->ARR10      ------>ZmHOX2a(1)      <---------ICU4            --------->ZAT14       <-----------RAV1(2)     <---------------AGL15 <---------YAB1     --------->ARR14(2) <---------At4g35610              --------->TOE2(3) <---------At4g35610 --GT1   ------>ZmHOX2a(1)  <---------MYB52(2) <----------DOF2     <---------ARR11(3)    <---------CCA1(2)   ctctctctatcctctacagagctcgcagcaactagcgcaggtactctctctttctcactccttaatctagatactaaagctgatcattttcatatctctc  19041000                                                              <---------DAG2                                                          --------->WRKY38(1)                   ----------->GT1               <---------ETT(1)                 ------>ZmHOX2a(2)              --------->DEAR3(2)                               <---             ----------->HVH21                --------->ARR14(2)                                <----         <---------ANAC46                     <---------ARR14(2)                         <---------ARR11(3)         <---------ANAC58                   --------->LBD16   <----------DOF2            --------->ARR11(3)         <---------ANAC58                 <---------LBD16 --------->WRKY45            --------->DAG2      <---------MYB52(1)             <---------ATHB12     --------->WRKY12           ---------->DOF2   agtaatccgtttcgtctgatcgggtaaaacacacttccaattactccggttccgacctcgttgactttttcttcagatagattccaaaaaagttctcatc  19041100                                        <-----------GT1                                            --                                 <---------YAB1                  ================================HOX2a_HOX2a                        --------->ARR14(2)                   --------->ARR14(2)                    --                        <---------ARR14(2)                   <---------ARR14(2)                 -----                     ----------------->AGL1                <---------ANAC58               =========== <---------ANAC58    <-----------------AGL1           --------->ATHB51                    ------>ZmHOX2a(2) <---------ANAC58    <-----------------AGL2     --------->ANAC46 ------>ZmHOX2a(1)        =========== -------DOF2       --------->GLK1(2) <---------MYB46(3)    <---------ANAC58         <---------ANAC58 -----ICU4        <---------GLK1(2) <---------WOX13(1)--------->ATHB12              <---------ANAC58-   tttacttgttcaatctcatagattccgatttgggtctgattgttacctctccacaactattgggttcctctcaaaacccttcgatttcttgatccatcct  19041200                                                                    ------>ZmHOX2a(2)                                                                   --------->GLK1(1)                                                                   <------ZmHOX2a(2)                                                                   <---------GLK1(1)                                                                  --------->ARR11(3)                                                                  <---------ARR11(3)               <-                                                                  <---------AGP1                   <-              <---------HSFC1(1)                                 --------->RVE1(1)               ----          <---------GLK1(2)                                   ---------->DOF2                    <---      <-----------GT1                                 --------->ARR14(2)                        <---- ------->TOE2(3)                                      <---------ARR14(2)                        <---- ------->TOE1(3)                                      --------->ARR11(3)                        <---- ->ZmHOX2a(1) --------->HSFB2a(2) <----------DOF2     <---------ARR11(3)                        ----- ==HOX2a_HOX2a<---------HSFB2a(2) <---------DAG2      --------->GLK1(2)                         ----- ======HOX2a_HOX2a          <-----------GT1          --------->RVE1(1)                          <---- ----->ZmHOX2a(1)       <---------MYB52(1)         --------->AHL20(2)     --------->YAB1     <-------   tccttaattttcgattctcgaaaaccgttttcacaacttttttttataaaaaaaaaaatctgcaaaaagatctctctgataagaatttttaaaaactttc  19041300   <---------TOE2(3) ---------DOF2 --------DAG2                                                                <-----------ARR10 ----------->AGL15                                                           --------->GLK1(2) ------------AGL15                                                           --------->ARR14(2) -------------AGL3                                                           <---------ARR14(2) -------------AG                                                            <---------GLK1(2) -------------AGL2          <----------DOF2                              --------->YAB1 ------------>AGL3       --------->ARR11(3) ------>MYB46(1)            <-----------HVH21 ------------>AGL2       <---------ARR11(3) ------>MYB83           --------->ARR14(2)              <- -------------AGL1   ---------->DOF2   <-----------GT1             <---------ARR14(2)         <------ ---DOF2         --------->YAB1  <---------TOE2(3)                 --------->GLK1(2)     <----------DOF2   cctttatggatgctctgaaacataaaagagcttttaagtttataccttcccttatattctctgttttcaaatctgtcagaatctgatcactcttttcttt  19041400  Previous    Next  AGI:  At2g46370.1    Description:  JAR1 (JASMONATE RESISTANT 1). similar to DFL2 (DWARF IN LIGHT 2) [Arabidopsis thaliana] (TAIR:AT4G03400.1); similar to jasmonic acid-amino acid-conjugating enzyme [Nicotiana attenuata] (GB:ABC87760.1); similar to putative auxin-regulated protein [Nicotiana glutinosa] (GB:BAE46566.1); similar to unknown [Populus trichocarpa] (GB:ABK95237.1); contains InterPro domain GH3 auxin-responsive promoter (InterPro:IPR004993) Range:  from: 19040863    to: 19043732    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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