Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->YAB1                                       ----------->RAV1(1)                  <---------ICU4                                      --------->ANAC46   <xxxxxxxxxxxxxxxxsmallRNA(si3)                    <---------At4g35610 --------->ZAT6--------->WOX13(1)    <---------GLK1(1) <----------DOF2<----------ID1             ---- -------->At4g35610             ------>ZmHOX2a(1)    --------->At4g35610        <-----------GT1  ----   tcagcactaccagtgatcaatcttgacgagtctcctaagaaatcactaaacattcagctttgaaagactaagacgacagaattcactcgatactataaac  19012200                                                                                                   --                                                                                                  ---                                                                                                <----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                               ------                                                                                            ---------                                                                                          --------->ANAC46                                                                                     --------->bZIP60(1)                                                                                     <---------bZIP60(1)                                                                              <---------ANAC55(2) ---                               ------->TEIL                                   --------->ANAC55(2) ---                            <---------ATHB12        =================================================             <---------At4g35610      <---------ICU4--------------->AGL15     <---------ANAC46 ------ ----->TOE2(3)      ----------->GT1   --------->YAB1<---------------AGL15    <---------LBD16--------- ----->TOE1(3)  --------->MYB52(1)   <---------ATHB12                       --------->MYB52(1)-------   cctaaacaagcttgtagctaaggggaaacaatgaatctaatcatcgactcgatactatttgaagagaaattgagaaacttacgggagacatcacagcacc  19012300                                                                                                -----                                                                                               <-----                                                                                               <-----                                                                          ------>ZmHOX2a(1)    ------        <---------MYB52(1)                                                ===========================   <---------ALFIN1                                                      <---------ANAC58     <------  <---------ABI4(2)                                                      <---------ANAC58     <------ -------->DOF2                                                      <---------AtMYB61         ------- ------>MYB52(1)                                                --------->ALFIN1              <------ -----MYB111(2)                                               <---------ANAC58                <------ ---->MYB46(3)                                                <------MYB83=========================== -----MYB111(1)                                   --------->ANAC58  --------->ALFIN1          ------- ---->AtMYB61                            --------->DOF5.7(2)  <---------ANAC46                ------- -----MYB46(2)                           <---------MYB52(1)   <---------ANAC58          --------->DAG2 --->ANAC58        --------->At5g28300  <-------GAMYB        <---------DEAR3(1)        ---------->DOF2 >At4g35610      --------->ANAC58     <-----------------AG   <---------MYB46(3)    ================== --->MYB83       --------->ANAC46     <-----------------AGL1 --------->MYB111(2)<-----------RAV1(2) --->MYB46(1)    --------->ANAC58     ----------------->AGL1 --------->MYB55(2) --------->ATERF1(1) =======================================================MADS_MADS --------->ALFIN1 <------ZmHOX2a(1)- --->ANAC58----------->HVH21 --------->ANAC46     --------->ANAC58<---------ANAC46 ================== >ZAT14<-------GAMYB<--------P    --------->ATERF1(1)       --------->ALFIN1    <------NtERF2<------- ---->RAV1(1)   <---------------------WRI1 <---------DOF5.7(2)<------MYB46(1) <---------ANAC46<------   aaacagcaccgttgtgaccacggtaagttccaaggcgctcgccgttatcggcaaaccagagggtgggtgtgtggtccttggcgcaggagaaaagcagatc  19012400      <-------GAMYB     <-----------RAV1(1) ->ZmHOX2a(2) ----GLK1(1) -ZmHOX2a(2) --->GLK1(1) ==HOX2a_HOX2a ---AGP1<---------REM1(1) -----ARR10 -->ARR14(3) ---ARR11(3) ---ARR14(2) =HOX2a_HOX2a -->ARR14(2)                      <-------TEIL                                           ------->TEIL -->ARR11(3)          <-----------HVH21                    <------NtERF2                 <---------ARR11(1) =HOX2a_HOX2a         --------->TOE2(3)               ------>ZmHOX2a(2)                  --------->GLK1(2) ----->ZmHOX2a(1)    --------->ANAC58               <---------ARR14(2)                   <---------ARR14(2) ==HOX2a_HOX2a       --------->ANAC58               --------->ARR14(2)                   --------->ARR14(2) --CCA1(2) ------->TEIL <---------WRKY12           <------ZmHOX2a(1)                    <---------ARR14(1) ---ARR14(3) --------->TOE2(3)------->TEIL   --------->REM1(1)                          <---------CCA1(2)   tccttctctgttgtacctcagaaacgtcaatggacgttcatgtcccttcatcaggatcggcctcatcttcagtttcttagggtttgatgcgaatctttga  19012500                                     --------->ATHB51                                     <---------ICU4                   <---------ATHB12  --------->ATHB12               <---------ATHB12      <--------ATHB1          ------------------------>ANAC81     --------->ANAC55(2)            <---------ATHB51     <---------ANAC55(2)            --------->ICU4     --------->ANAC58               --------->AHL20(2)     --------->ANAC46               <---------AHL20(2)     --------->ANAC58           >>>>>>>>>>GT-3b                  <----------DOF2    <-------TEIL --------->WOX13(1) <---------YAB1         --------->MYB52(1)    <---------ZAT18   --------->ARR14(1)        --------->ANAC58          --------->LBD16           --------->ZAT14   --------->CCA1(2)         ----------->GT1          --------->ANAC55(2)        <---------ZAT14  <---------ARR14(2)         --------->ANAC58         <---------ANAC46      <---------At4g35610  --------->ARR14(2)  ---------->DOF2-------->HAHB4   <---------ANAC55(2)   ----------->RAV1(2)  --------->ARR11(1)--------->YAB1--------->YAB1     <---------LBD16  <<<<<<<<<TBF1                --   aacagatacgaaatcgaatcaatcaaaagacaagaaaaataattgaagaaacgattacggaaaacggctttcttcttcacctgttcacttgaagacgaga  19012600                                                                  <----------DOF2                                                             <-----------GT1    <---------AHL20(2)                                             ------>ZmHOX2a(1)<-----------GT1   --------->AHL20(2)                                      <----------DOF2     <----------DOF2      --------->AHL20(2)         *TSS  ----------->GT1 <---------GLK1(1)     <-----------GT1       --------->AHL20(2)        <------ZmHOX2a(1)    <------ZmHOX2a(1)      ----------->HVH21      <---------AHL20(2) ----------->HVH21       --------->TOE1(2)---------->ID1  <---------DAG2  --------->ICU4        ----- ------->CCA1(2)--------->ZAT18--------->GLK1(1) <----------DOF2 <---------DAG2<---------AHL20(2)   gagacgacgaggaagaagtgcaaaaaccctaggaaatcaactttgtcctctcttttgacacttttacccttttgtaattttttaaattactcgagatgcc  19012700                                                                                            <--------                                 <---------At4g35610                        <------------------------ANAC81                    <----------DOF2                                      ------>NtERF2   <-----------GT1                   <---------ANAC58                                  <---------MYB52(1)  ---------->ID1       ---------->DOF2         <-----------GT1                      <-------GAMYB  ---------->ID1  -- ------>RAV1(1)    <---------ANAC58                        ------->TEIL <---------ANAC46<-----------GT1   acagtttagcaaagctcagtggcttcagcgtttttagcttcttccctatttgatgagttcgaacctcgcccgttgcgcctattttgtttttttcctttct  19012800                                                                                                -----                                                                     --------->YAB1             <----                            <---------ANAC58                        <---------YAB1              <----                            <---------ANAC58                 --------->ANAC58                 <------MYB83                           <---------MYB46(3)                --------->ANAC58    <---------AHL20(1)            <---------TOE1(2)  <-------TEIL           --------->ANAC58   ---------->DOF2      <------MYB46(1)            <---------TOE2(2)<---------PCF2           --------->ANAC58 <---------YAB1 ----------->GT1 --DOF2 <-------TEIL      <---------ANAC46       <----------ID1 <----------DOF2  --------->ARR11(3) -------->DOF2          <-----------RAV1(1)    ---------->DOF2  <---------DAG2----------->GT1--------   caaaagcagtttcatacgttttttttttgtgggtgcatatgtctatttgaaaagacaaacaacaagctttatcatcaaagtagtatattggtaatttggt  19012900                                                 <---------YAB1                                 --------->ARR11(3)                                 <---------ARR11(3)                                 <---------AHL20(1)                 ----------->GT1 --------->ICU4  ----------->GT1                 --------->TOE2(3) --------->AHL20(1)                              <---------ARR11(3) ---------->AtSPL8          ----------->GT1    --------->YAB1                      --------->ARR11(3) -----------AtSPL8        ----------->GT1     --------->ICU4                      <---------CCA1(2) -----------AtSPL3    ---------->DOF2  <---------ANAC46                      --------->GLK1(2) ->MYB59        ----------->GT1  --------->AHL20(1)         ---------->DOF2 <---------GLK1(2)      --   agtacatcaattctgaaaatgttaaaaagagagaaaatattatgtggaatgatgaaaaaatggaaagacatgttcaaagaatctaaatcttgatgttgaa  19013000                                 <---------RAP2.6(3)                                --------->RAP2.6(2)                          <---------O2                          <---------TGA1a                          --------->TGA1a                          --------->ANAC58                          --------->ANAC55(2)                                       ----------->RAV1(1)                          <---------ANAC55(2)                                     --------->At4g35610                          --------->ANAC58              ----------->GT1           <---------At4g35610          --------->ICU4  --------->O2   --------->AtMYB61     <-------TEIL   --------->ANAC46 ------->ATHB12           --------->ANAC46           --------->GLK1(2)  ---------->DOF2---------->DOF2   gtaattggagtcaaaatgatgcagtctcacgtagccgtcttcacctccactagagaaactgaaaatacattccaaaaaacactcagcaacaaagcctaaa  19013100  Previous    Next  AGI:  At2g46280.1    Description:  TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1); nucleotide binding / protein binding. Identical to Eukaryotic translation initiation factor 3 subunit I (TIF3I1) [Arabidopsis Thaliana] (GB:Q38884;GB:O82342;GB:Q94K09;GB:Q9C5Z0); similar to eukaryotic translation initiation factor 3 subunit 2, putative / eIF-3 beta, putative / eIF3i, putative [Arabidopsis thaliana] (TAIR:AT2G46290.1); similar to TGF-beta receptor-interacting protein 1 [Phaseolus vulgaris] (GB:AAK49947.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (In Range:  from: 19010499    to: 19012609    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g46290.1    Description:  eukaryotic translation initiation factor 3 subunit 2, putative / eIF-3 beta, putative / eIF3i, putative. similar to TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1), nucleotide binding / protein binding [Arabidopsis thaliana] (TAIR:AT2G46280.1); similar to TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1), nucleotide binding [Arabidopsis thaliana] (TAIR:AT2G46280.2); similar to TGF-beta receptor-interacting protein 1 [Phaseolus vulgaris] (GB:AAK49947.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 19012844    to: 19014952    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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