Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   ---------->DOF2                                                                    --------->LBD16                                                                   --------->RAP2.3(2)                                                                   --------->RAP2.6(2)             <-         ----------->HVH21--------->ANAC58                         ----------->RAV1(1)           <--- ------->MYB52(1)         --------->ANAC58             <----------DOF2      <-----------GT1  <------- ---->ANAC46             --------->DAG2    <-----------GT1        --------->RAP2.3(1)   <----------DOF2 ---->ANAC58            ---------->DOF2  <----------DOF2        --------->ARR14(2)   <---------ARR11(3) ---->ANAC58 ---------->DOF2   --------->AtLEC2  <----------DOF2<---------ARR14(2)   --------->ARR11(3)   gaaaccgatgtatgacaaagtcttgataaagccatgaacaattctttacctctttctcttttagtagagccgcataatttactgaaagagctttgatttc  18978000                                   <---------ARR11(3)                              <----------DOF2                             ----------->GT1                              <---------DAG2                      --------->YAB1                        ------>ZmHOX2a(2)                         <---------ICU4                       <---------GLK1(1)                         --------->ICU4--------->ARR14(2)   <---------YAB1     --------->ARR11(3)                         <---------ATHB51                   x --------GLK1(2)      <---------ARR11(3)                         <---------AHL20(2)               >>> ------YAB1    <---------ANAC58    --------->ARR11(3)            --------->AHL20(2)            >>>>>> --GLK1(1)     <---------ANAC58   <---------CCA1(2)            --------->YAB1  <---------ARR14(2)xxxx   tgattctgatttttgaagcttgttgatctctgctttatatctctcaatctacaaaatttgagcataaataattatccagtgaatccagtaactggaagaa  18978100       >>>>>>>>>TBF1     ------------------------>ANAC81                                                              ---    >>>>>>>>>TBF1                                                                       --------->ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                --------->ANAC58 >>>>>>>>>TBF1  >>>>>>>>>TBF1                                                         ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                               --------->TOE2(3) >>>>>>TBF1  >>>>>>>>>TBF1                       <---------ARR14(2)                 <---------MYB59 >>>TBF1  >>>>>>>>>TBF1              <------ZmHOX2a(1)                   --------->ARR11(3)       <-- xxxxxxxxxxxxxxxxxxx>smallRNA(se3)<-----------RAV1(2)     --------->ATHB12         <---------ANAC55(2)   gaagaagaagaagaagaagaagaagagaaatagacctcaggattaacaggcgattcgaaaccattggccattggagacctcgaatacctaaagccattag  18978200                              <---------------AGL15                             ----------------->AGL2                           --------->PCF5                           --------->TCP16(1)                           --------->PCF2                           --------->TCP11(2)                          <---------TCP16(2)                      <---------MYB46(3)                 <------NtERF2--------------->AGL15                <---------RAP2.6(3)                ------>NtERF2<-----------------AGL2               <---------bZIP60(1)               --------->RAP2.3(2)               --------->RAP2.6(2)               >>>>>>>>>AtERF-3              ------>ZmHOX2a(2)               --------->ATERF1(2)          <------ZmHOX2a(2)               <---------ATERF1(2)         --------->ARR11(3)               --------->RRTF1(3)          <---------ARR11(3)               --------->RAP2.3(3)         --------->AGP1                         --------->ANAC58              --------->RAP2.3(1)          --------->ARR14(2)                     --------->ANAC58              --------->ERF1 <-----------------AGL3<---------ICU4                <---------ZAT18             <---------ZAT18 ----------------->AGL3--------->YAB1         ------->TEIL             <---------ATERF1(1)           --------->ARR14(3)          --------->AtLEC2        <------ZmHOX2a(2)<---------ZAT18   <---------ARR14(3)      <-----------HVH21   ------>ZmHOX2a(1) <---------AtMYB61     <---------ARR14(2)      <-----------TGA1 ------>GLK1(1)>>>>>>>>>AtERF-4          ----------->ARR10       <------NtERF2 <---------SPL7 -------GLK1(1)--------->DEAR3(1)    ----------->GT1           <---------DEAR3(1)--------->ZAT18 <---   aattcctccgatcagtgccgccattggtggacccataaatggtgagatcttcatcatcatcttcgtcgtcgtcatgcacatcgtgcgcaatcttgttcaa  18978300                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              <------                                                                       --------->HSFB2a(2)    -------                                                                       --------->LBD16     --------->ANAC58                           --------->ANAC46                   ------>ZmHOX2a(1)        --------->CCA1(2)                    ------>MYB83                          --------->GLK1(2)           <----------ID1                    ------>MYB46(1)                       --------->ARR14(2)    <---------YAB1<------                  ------->GAMYB                           <---------ARR14(2) <---------AHL20(2)<-----                  <---------MYB59                        <---------GLK1(2) --------->GLK1(2) <-------    ------>ZmHOX2a(1)--------->GLK1(1)            <-----------HVH21    <---------HSFB2a(2) --------->ANAC58 ------GLK1(2)   --------->MYB46(3)             <------ZmHOX2a(1)------>ZmHOX2a(1)---------->DOF2   attctccttcaaattggcaaccgaactccacatagctcaactcgcccgaaggagtcagagattcctcctactccgagaatttatcaaagagacaagaatc  18978400 ------>ZmHOX2a(1) ==============================HOX2a_HOX2a --->HSFB2a(1)                                                      <---------ANAC58 ----HSFB2a(1)                                                      <---------ANAC46 --->HSFC1(2)                                                       --------->ETT(1) -->GLK1(2)            *TSS                                       <-----------HVH21              <--- -----ARR10           --------->ARR14(2)                       <------------CBF   ----------->HVH21<- -->ARR14(2)          <---------AGP1                    --------->ATHB12          <---------SPL7 ---- ---ARR14(2)          <---------ARR14(2)               <---------YAB1    <---------WRKY12        <--- -->ARR11(3)    <---------YAB1                         --------->ICU4<---------MYB46(3)   <---------ANAC46 ---ARR11(3)    <---------TOE2(3)       ------------>CBF<---------ICU4   <---------WRKY38(1)     <--- ----HSFC1(2)<---------YAB1        --------->MYB46(3)--------->YAB1 <---------ANAC58    <-----------HVH21 --GLK1(2)<---------YAB1------>ZmHOX2a(2)     <---------YAB1------------>CBF   --------->MYB52(1)<---   ttcctctgtaagattattatcgtagatcggagtaacaacaacaccaatatgattttcatgatttcaattgtcgggtcaacttatcggacgggtcgggtta  18978500           <---------AHL20(2)          --------->AHL20(2)                                                          --------->YAB1 ------ANAC58                                        ---------->DOF2             <------ZmHOX2a(2) ----------RAV1(1)                               --------->ZAT14             <---------HSFB2a(2) ------->RAV1(2)                                 <---------ZAT18             --------->HSFB2a(2) ------ANAC46                                --------->ATHB12          <---------DOF5.7(2) ------ANAC58                               <-------TEIL        <----------DOF2 --------->AGP1 ------ANAC55(1)                 XXXXXXXXXXXXXXXXXXXXX>MIR777  <----------DOF2  <---------ARR11(3)   cctgtggctctattttataactaaggcccaatctcactcactgagattcattgcacaaagatgggcctttagtaaacgtccagatcaaacatatgggcct  18978600                                                                                                  <--                                                                                                  ---                                      <---------ANAC58                                <---------ZAT2                                      <---------ANAC55(1)                            --------->MYB52(2)                                      --------->ANAC55(2)                          <---------MYB52(1)                                      <---------ANAC55(2)                          --------->DOF5.7(2)         <---------MYB52(1)           <---------ANAC58                            --------->TOE2(3)    <---------ARR11(1)              <---------TGA2(2)                             --------->TOE1(3)    <---------ARR14(2)           --------->ATHB12                                <---------ANAC55(2)    --------->ARR14(2)           <---------ICU4                                  --------->ANAC55(2)   <---------CCA1(2)             --------->YAB1                                 <-------TEIL   <----- <---------ANAC55(2)            <---------YAB1    <<<<<<<<<<ABI3       --------->ANAC58<---------ANAC58 --------->ANAC55(2)            --------->ICU4    <<<<<<<<<<FUS3       --------->ANAC58<---------ANAC58 <---------ANAC58        --------->RAP2.6(3)  <---------ICU4           --------->ANAC46<---------ANAC46 <---------ANAC58       --------->MYB52(1)   <---------YAB1            --------->ANAC55(2)    -------   agtccgtatccgttgatttagaattctaacggctatgattacgtctcattaatgcatgctctatctaaacttcacgaaatgatacgttagcttggagatc  18978700        ------>NtERF2            --------->YAB1   <---------WOX13(1)           <---------YAB1  <------------CBF           <---------------AGL15                         <---------ANAC46 --------->ATHB12            ------>ZmHOX2a(1)                  <---------bZIP60(1)       <---------YAB1 -------ANAC55(2)        <-----------GT1                        ----------->HVH21       --------->YAB1 ------>ANAC55(2)  <----------DOF2                              --------->bZIP60(1)    <---------AHL20(2) -ZmHOX2a(2)    <---------ARR11(3)                       <---------YAB1    <---------ANAC58<---------ICU4 -->ARR11(3)    --------->ARR11(3)                  --------->ZAT6         <---------ANAC58--------->YAB1   aagtgattgcagccctaaaatcttttgtttccttatgatagaaattcaacttcaacactataagtgatgacatgttggcttggaactaaataatcataag  18978800                                                                --------->ORA47(1)                                                                ------>NtERF2                                                               ----------->HVH21                                                               --------->DEAR3(1)                                                               <---------ETT(1)                                                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                            ------->GAMYB         --------->AHL20(2)                               xxxxxxxxxxxxxxxx>smallRNA(i)      <--------         <---------AHL20(2)                              --------->WOX13(1)          <-----------RAV1(2)     <---------AHL20(2)                                ------------>CBF          <------MYB83 <------     --------->AHL20(2)                    <---------ANAC46--------->MYB46(3)    <------MYB46(1) <---------AHL20(2)           ---------->DOF2          <---------ATHB12         <---------MYB46(3)  - ----------->TBP           --------->TOE2(3)         --------->GLK1(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->AHL20(2)        --------->TOE1(3)      xxxxxxxxxxxxxxxx>smallRNA(i)XXXXXXXXXXXXXXXXXXXX>MIR168A/B   aatataaatatttatttggaactaaaaaaccttaaaactccattttcgtagagagaaatcaatcgccgaccatggttttcgcttggtgcaggtcagcatc  18978900  Previous    Next  AGI:  At2g46180.1    Description:  GC4 (GOLGIN CANDIDATE 4). similar to GC3/GDAP1 (GRIP-RELATED ARF-BINDING DOMAIN-CONTAINING ARABIDOPSIS PROTEIN 1), oxidoreductase/ transition metal ion binding [Arabidopsis thaliana] (TAIR:AT3G61570.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39688.1) Range:  from: 18974432    to: 18978423    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g46190.1    Description:  similar to mitochondrial glycoprotein family protein / MAM33 family protein [Arabidopsis thaliana] (TAIR:AT2G39790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69135.1); contains InterPro domain Mitochondrial glycoprotein; (InterPro:IPR003428) Range:  from: 18978872    to: 18979877    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version