Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <---------At4g35610    ---                                                                           <---------ZAT2        <---                                                                   <---------bZIP60(1)           <---                                                                   --------->bZIP60(1)          -----                                              --------->At4g35610  <---------ANAC58            <-----                                     ------>MYB46(1)               <---------ANAC58  <---------YAB1                        --------->YAB1 --------->YAB1              <---------ANAC46 <---------AHL20(2)                      --------->AHL20(2)---------->DOF2            <---------ANAC55(2)        -------                   --------->TOE2(3) ------>MYB83     ---------->DOF2 <---------ANAC46    <---------AHL20(2)           ----------->GT1 <-----------GT1   --------->RAP2.6(2)   --------->ANAC55(2)<---------AHL20(2)   agtagattaatacatgttaaaacttaaaataactcgacctatcaaagccgcttacttaaagagagagttacgtcgtgagcttgtatttttatttttttga  18972000         --------->AHL20(1)         <---------AHL20(2)         <---------AHL20(1)                                            <---------ANAC55(2)         --------->AHL20(2)                                            --------->ANAC55(2)       <---         --------->ARR11(3)         <---------HSFB2a(2)                <---------ANAC58          <---         <---------ARR11(3)      <---------YAB1                        <---------ANAC58          ----   ----------->GT1             --------->YAB1                --------->ANAC58                   ----- --->NtERF2                    <---------ICU4                --------->ANAC58                 ------- ------RAP2.6(2)              <---------ATHB12               --------->ANAC46                 <------ ------RAP2.3(3)       ---------->DOF2                   --------->CCA1(2)       <----------DOF2<---- ---->RAP2.6(3)       ---------->DOF2                   <---------ARR14(2)     --------->At4g35610  < ------GT1     ---------->DOF2--------->ICU4            --------->ARR14(2)<---------ANAC46   <------- ---->HVH21   <---------AHL20(2)--------->TOE2(3)     ----------->GT1<-----------GT1       --------->REM1(1)   cggcccagtaatatattaaaagcccaaaggcaaacattatagaaggccctcttaaggggatacaagcgaaattacgtcgtgagctttaatgcttcatcat  18972100                                                 <-----------ARR10                                                 <---------ARR14(2)                                                 ------->TEIL                                                 --------->ARR14(2)                                            ----------->GT1                                            <---------ANAC46                                            <---------ANAC58                                        <-------MYC2                                        -------->ABF1                                        ------->MYC4                                        ------->MYC2                                        <-------MYC4                                        ------->MYC3                                        <-------MYC3                                       --------->TGA1a  <---------YAB1                       <---------TGA1a  <---------TOE2(3)    ==========================bZIP_DOF ------ICU4 --------->LBD16            <---------ANAC55(2) -----HAHB4 <---------RAP2.6(3)        --------->O2                             --------->DAG2 ----->ATHB51<---------MYB52(1)        <--------ABF1                          ---------->DOF2 ---->ICU4  --------->At5g28300        --------->ANAC55(2)                  --------->YAB1 -->YAB1   --------->RAP2.3(2)         ==================================================bZIP_DOF ---ICU4   --------->RAP2.6(2)    ----------->HVH21                   <---------ANAC55(2) -----YAB1 <---------ANAC46   --------->CCA1(2) <---------CCA1(2)     --------->ANAC55(2) ---------AHL20(2)     <----------DOF2 <---------O2                <---------MYB52(1) --YAB1    ----------->GT1 --------->ANAC46 <---------ANAC58     <---------MYB46(3)  <------NtERF2   aattaagtttgagccgtaaatttcgctatacgatatgggacacgtgtcgtgaatctactcgtggtatcggttacttaatgaaaaggcaccattcaacgtt  18972200                 <---------ALFIN1               --------->MYB52(1)                -------->P                      <---------DOF5.7(2)                <---------REM1(2)               <-----------GT1             <---------ANAC46                 <---------MYB52(2)             <---------ANAC58               --------->WOX13(1)             <---------ANAC58             <---------MYB52(1)       <---------YAB1                    <-----------HVH21                                --------->TOE2(3)    ------>ZmHOX2a(1)                    --------->LBD16                                  <---------MYB59   <---------ANAC58 <-------MYC3        --------->ANAC46     <-----------TGA1     <---------MYB52(1)   <---------ANAC58--------->ANAC46<----------DOF2      <---------MYB52(1) --------->MYB52(1)   <----   --------->TOE2(3)------->MYC3 <---------At4g35610 <-------TEIL --------->YAB1 <-------GAMYB  -----   ttcttccttatcgttgcctacacgtttcaaggctctgcttctccgtcaattaacgtccgttttcgtcatcaaaatactaacgccgttgatgaccttattt  18972300                                               <---------MYB46(3)            <---------YAB1                                               ----------->GT1              <---------AHL20(2)                                             <-------PIF5                   --------->AHL20(1)                              <---------HSFB2a(2)     ---------->DOF2       <---------AHL20(1)             --------->MYB46(3)              ------->PIF5      <---------ANAC46          <---------ANAC58            --------->SPL7    --------->HSFB2a(2)   ----------->TBP        --------->AHL20(2)   --------->AHL20(2) <-------TEIL         <-------TEIL        <---------ANAC58       *TSS       ---- -----AHL20(2)      <---------SPL7    <-----------RAV1(2)      <---------ANAC58      <------------CBF ---->AHL20(2)  --------->ANAC46 --------->ARR14(2) <---------YAB1         --------->YAB1<---------ANAC58   aaaaattaactccgaaccacgacgttcgggttttggaacctcaggctcgtggttataaaagtcttgtgtgaaacctattatatttgccattgcttaatcc  18972400                                                                                             --------                                                                                         --------->ARR11(3)                   <---------CCA1(1)                                                 <------NtERF2                  --------->ARR11(3)                                               <---------ANAC58       ------>ZmHOX2a(1)                                                           <---------ANAC46--  ------>ZmHOX2a(1)<---------RVE1(1)                       --------->ARR11(3)      <---------ANAC58-- -->ZmHOX2a(1)    <---------ARR11(3)           <---------LBD16                    <---------LBD16  <-   tctcctctccttcacgttgagatatttttgagttttctgtgttgaattttggggaatcgaagaaattgaatttcaaaaatcaatggcggaagaaattgaa  18972500                                             --------->ARR14(2)                                             <---------ARR14(2)                                           ----------->ARR10                <---------ARR14(2)     <---------HSFB2a(2)                --------->ARR14(2)     --------->HSFB2a(2)               ==========================HOX2a_HOX2a               <------ZmHOX2a(1)   ------>ZmHOX2a(2)               ===========================HOX2a_HOX2a        <---------RAP2.6(3)       <---------GLK1(1)        ----------->RAV1(1)       --------->GLK1(1)       --------->ATERF1(2)       --------->ARR14(3)       ----------->HVH21         --------->ARR14(2)       --------->RAP2.3(3)       <---------ARR14(2)       <---------ETT(1)          <---------AGP1<-------TEIL                                  --------       <---------ATERF1(2)       <-----------ARR10                                     --------->HSFB2a(2)       --------->ETT(2)          --------->ARR11(3)              <-----------TGA1      <---------HSFB2a(2)      --------->DEAR3(2)         <---------ARR14(3)         <-------TEIL              <---------TOE2(1) --->GT1------>NtERF2          ----------->ARR10<-----------GT1---------->ID1         <---------TOE1(1) ------->ARR11(3)     ----------->HVH21--------->LBD16    --------->ARR14(2)     --------->LBD16 ------->GLK1(2)<---------GLK1(2)<---------ARR11(3)     <---------YAB1       --------->ARR14(2) --------ARR11(3)--------->GLK1(2)<------ZmHOX2a(2)--------->AtMYB61         <---------ARR14(2)  <---   aaatctgtgccgacagaggaatctctgatggagaagatctccgagaagattcaccatcacgattcgtcgtcatcgtctgaatccgagtacgagaaacctg  18972600                         ------>ZmHOX2a(2)                        <------ZmHOX2a(2)                       --------->AGP1                       <---------AGP1                       <-----------ARR10                       <---------ARR11(3)                       --------->ARR11(3)                       <---------ARR14(2)             --------->REM1(2)                                              ---------->DOF2         <---------DEAR3(1)       --------->ATHB12                       <---------ANAC46        <---------At4g35610      <---------YAB1                        --------->MYB55(2)        --------->At4g35610     <---------TOE1(2)                      <---------MYB46(3)    ===========================HOX2a_HOX2a                            --------->ALFIN1    ------>ZmHOX2a(1)  --------->ARR14(2)                             <---------DEAR3(1)    ============================HOX2a_HOX2a                           <---------AtMYB61       ------- --->RAV1(2)----------->HVH21   <---------TOE2(2)                 <---------HSFB2a(2)         <------ ------GLK1(2)       ----------->ARR10    <------NtERF2       <---------GLK1(2)    --------->MYB52(1)   attctccttcggctgtgaaggcgaagatctatcgtatgtttggcagagagaagcctgttcacaaggttctcggtggtggaaagcgtaagggttttatata  18972700                                                                         --------->At4g35610                                                                         <---------At4g35610                                                                    <---------ANAC58                                                                    <---------ANAC58                                                            <---------ANAC58                                                            <---------ANAC58                                                           <-------TEIL <---------ARR11(3)                         --------->YAB1                  --------->TOE1(2)                      -----           <----------DOF2   <---------AHL20(2)          --------->TOE2(2)------>ZmHOX2a(2)   <------ -->ARR11(3)            <---------ATHB12                <---------HSFB2a(1)                ---------- ---AHL20(1)    <----------DOF2               ------>ZmHOX2a(2)   <---------YAB1<XXXXXXXXXXXXXXXXXXXXMIR4240   ttcagtgtctcgtcttttctttttctatcatttttttctctggtttgatcgatttggaacatgcgttgatgcttgatctgcaatgttagggtctagttac  18972800                     <---------ICU4                     --------->ATHB12                    <---------YAB1                    --------->ICU4               <------MYB83                                 --------->CCA1(2)               <------MYB46(1)                             <---------ARR14(2)            <---------ANAC58 --------->ATHB12              --------->ARR11(3)            <---------ANAC58 <---------ICU4                --------->ARR11(1)        --------->ARR11(3)   --------->ATHB51            ----------->ARR10 ---->ZAT6------>ZmHOX2a(2) <---------YAB1               <---------YAB1 -----GT1<------ZmHOX2a(2)--------->ANAC55(2)            <---------TOE2(3)                       <--- ->GT1  <---------ARR11(3)<---------ANAC55(2)     <------ZmHOX2a(2)     ---------->DOF2<----------DOF2   actcgtataagatcgcttggtgatgattacataattgcattttcttgaatcgatccattaagatttgggcatccaaaagaagacttgaactttagggata  18972900  Previous    Next  AGI:  At2g46170.1    Description:  reticulon family protein (RTNLB5). similar to reticulon family protein (RTNLB6) [Arabidopsis thaliana] (TAIR:AT3G61560.1); similar to unknown [Populus trichocarpa] (GB:ABK92738.1); similar to unknown [Populus trichocarpa] (GB:ABK94480.1); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 18972386    to: 18974286    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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