Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          ------->TEIL                     --------->ANAC58                <---------------AtSPL3                <---------------AtSPL8                       --------->ANAC58                       -           <---------MYB52(1)                           <---------ZAT6                              -           ------>ZmHOX2a(1)--------->LBD16    <---------AHL20(2)                                   -   <---------LBD16   --------->ANAC58       ----------->GT1  --------->ANAC58       --------->MYB46(3)   caaacctcgggtccttagttagtacgaaccccgagccaagagtgtttagtaaattgtagtgggaagccttgaattactcaaatgtaaccaaaacgaatat  18969800                                            --------->MYB46(3)                                          --------->PCF2                                   ---------->DOF2                                 <---------ANAC46                             <---------AHL20(1)                          --------->ANAC46                             <---------ARR11(3)                         <---------TOE1(3)     --------->YAB1          --------->AHL20(1)                        <---------DOF5.7(2)     <---------ICU4          --------->ARR11(3)                       <---------WRKY12 ------->GAMYB             <---------AHL20(1)                         <---------WRKY45 -------->ANAC58           --------->AHL20(1)                         <---------WRKY38(1) -------->ANAC46           <---------AHL20(2)   --------->MYB46(3)   --------->WRKY18(1) -------->ANAC58     ----------->GT1     <------ZmHOX2a(1) ----------->GT1    <---------AtLEC2   caacgaaacatgacaacgaataagtgtaaaatattttcaaagaggacccatcaaacgaatattgttaaacagtcaacgttacatggctcgaacacatttt  18969900                                                      --------->ALFIN1                                                      <--------P                                         <---------AHL20(2)                                         <---------YAB1                                      <---------AHL20(1)                                   <---------ICU4                                      --------->AHL20(1)                                   <---------AHL20(2)                                      --------->ARR11(3)                         >>>>>>>>>MYB98                                      --------->AHL20(2) <---------PCF5         --------->MYB52(1)                      ----------->GT1 <---------ARR11(3)<------MYB46(1)         ------>MYB46(1)                    ---------->DOF2   <---------AHL20(2)<------MYB83            ------>MYB83              <---------ICU4         --------->AHL20(2)--------->ALFIN1       <---------MYB59             --------->AHL20(1)  --------->AHL20(2)  <-------GAMYB      --------->YAB1    --------->AHL20(2)             --------->AHL20(2)--------->ANAC58<---------ANAC58     <---------AHL20(2)  --------->YAB1             <---------AHL20(2)----------->GT1 <---------ANAC46     --------->AHL20(2) --------------            --------->AHL20(2) --------->ANAC58<---------ANAC58 --------->AHL20(2)     <-------------   atacaataaacaaaaaaaattacaaagtaaaacaagaaaatatattattccttggggttgggccacttaattaataaaaacctaacttactaataaatgc  18970000                                               ------>MYB46(1)                                              <---------ALFIN1                                              --------->MYB55(1)                                             <---------MYB46(2)                       --------->AHL20(2)                                             <---------MYB111(2)                      <---------AHL20(1)                                             --------->DEAR3(1)                       <---------AHL20(2)                                             <---------MYB55(2)                       --------->AHL20(1)                                            --------->ANAC58                         --------->AHL20(2)                                            <---------ALFIN1                         <---------AHL20(2)                               <---------At4g35610                               <---------YAB1                               --------->At4g35610  <----------DOF2             <---------AHL20(2)                               <---------ZAT2--------->MYB46(3)                 --------->AHL20(2)                               --------->ZAT2<---------MYB111(1)               --------->YAB1                           <-----------HVH21--------->ANAC58                   --------->AHL20(2)                         <-------TEIL       --------->ANAC46                   <---------AHL20(2)                     <---------AHL20(2)    --------->ANAC46                --------->AHL20(2)                    --------->AHL20(2)    <---------ALFIN1                 --------->AHL20(1)                  --------->YAB1     <---------GLK1(1)                     <---------AHL20(2) ->AGL15     <---------ATHB12<-----------RAV1(2)    <---------DAG2        --------->AHL20(2) --AGL15    --------->ANAC46<---------At4g35610------>MYB83               <---------AHL20(2)     ----   aaatttcagtttccaaacaatattaaatgcatcagctgcaattcccacccacctctttttctcttcccctaactaaattaattaaaattaaattttcaaa  18970100                                                                                                    -                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                -----              <---------ARR11(3)                                                                <----              --------->GLK1(2)                                                                <-----              --------->ARR11(3)                                                             ------>NtERF2             --------->RVE1(1)                                                               <-------          --------->YAB1                                *TSS                                ---------         --------->AHL20(2)                       --------->TCP16(1)                      <---------ATERF1(1)     <---------AHL20(2)                           ------->TEIL                           --------->ANAC58     --------->AHL20(2)                       ------->MYC3                               --------->ANAC58  --------->AHL20(2)                          <-------MYC3           <-----------GT1     --------->ANAC46 --------->AHL20(2)                        ----------->RAV1(1)     <----------DOF2   --------->ZAT6<- ----->AHL20(2)       --------->ZAT6       <---------ALFIN1   <<<<<<<<<TBF1          <---------ALFIN1   aaaataaaaaaataaaaatctctatcactctcttctctctctctcccacatggacccagtcttcttcttctttaccatcaaatgtcaacactcgcctcct  18970200                                                  --------->ANAC58                                                  --------->ANAC46                                               --------->ZAT2                                              --------->ANAC58                                              --------->ANAC46                                          --------->AtMYB61                                        ----------->RAV1(1)  <---------ATERF1(1)                   ------>NtERF2  ------>NtERF2                        <---------ALFIN1 --------->DEAR3(1)                    --------->ANAC46 -------->ATERF1(1)                  ------>NtERF2--------->ANAC58 ---->NtERF2                        --------->DEAR3(1)  --------->AtMYB61 ------>DEAR3(1)                    <---------ETT(2)   --------->MYB46(3) ------>ANAC46       <---------ALFIN1<---------ATERF1(1)<---------ALFIN1 -------ALFIN1      <---------MYB55(2) --------->DEAR3(1) ->ZmHOX2a(1)       --------->MYB46(3)--------->ATERF1(1) -----ATERF1(1)  <---------ALFIN1 <---------ATERF1(1)  <---------MYB55(2) ----ALFIN1     <---------ZAT18   <-----------HVH21   --------->ANAC58 --ATERF1(1)    --------->ZAT18  --------->DEAR3(1)   -------->P >DEAR3(1)  ------>ZmHOX2a(1) <---------ALFIN1--------->ANAC58 --------ATERF1(1)  --------->DEAR3(1)<------NtERF2   --------->ANAC58          <----------DOF2   ccgcctccgtcttcctagtccaccctccccttccaccgtcgccaccacaagcaggcaaccactcttacctcacaactctaggctttggctactccatagc  18970300                                                                                 ------->GAMYB                                                                                 --------->DEAR3(1)                                                                                --------->DEAR3(2)                                                                                <------------AtMYB77                                                                                --------->MYB46(3)                                                                                <---------MYB55(2)                                                                         ----------->RAV1(1)                                                                         --------->RAP2.3(2)                                                                         --------->RAP2.6(2)                                                                         --------->DEAR3(1)                                                                         --------->RRTF1(2)                                                                        --------->RAP2.3(1)                                                                        --------->ATERF1(1)                                                                        --------->ORA47(2)                                                                       ------>NtERF2                                                                       <---------ATERF1(1)                                                                      --------->RAP2.3(2)                                                                      --------->ATERF1(2)                                                                      <---------DEAR3(1)                                                                      --------->ANAC46                                                                      --------->RAP2.3(3)                                                                      <---------ATERF1(2)                                                                     --------->DEAR4(2)                                                                     --------->ERF1 --------->DEAR3(1)                                                                     --------->RAP2.3(1)                                                                     --------->ATERF1(1)                                                                    <---------ATERF1(1)                                                                   --------->ANAC46 <---------ANAC46                                                           --------->At5g28300<---------ALFIN1                                                          <---------ANAC46 <---------ALFIN1                                                          <---------ANAC58------>NtERF2                                                     --------->At4g35610<------NtERF2--------->LBD16                                   ------>ZmHOX2a(1)<-----------RAV1(1)--------->ABI4(1)                          --------->ETT(2) ------>ZmHOX2a(1)----------->HVH21--------->MYB46(3)                          <---------ETT(2)--------->TOE2(3)--------->LBD16<------NtERF2                    ------>ZmHOX2a(1)  <-----------GT1    <---------ANAC58--------->LBD16      <-----                 ---------->ID1    <----------DOF2  <---------MYB46(3)--------->DEAR3(1)  --------->ARR14(2)   catagctctcggttttctcgtccttctctcgaccgtccttttatcctcatacatctgttgccgtgactctcgccgccgcacaaccgccgtggaatccaca  18970400                                                                <---------HSFB2a(2)                                                ======================HOX2a_HOX2a                                      <-----------RAV1(1)       --------->HSFB2a(2)                                    <----------DOF2          --------->ARR14(3)                                   <---------ICU4            --------->ARR14(2)                                 <---------ARR11(3)          <---------ARR14(3)      --------->ALFIN1          <------NtERF2          --------->GLK1(2)           <---------ARR14(2)    <---------MYB46(3)        <---------ANAC58    --------->LBD16     <------ZmHOX2a(1)            --------->bZIP60(1)        <---------ANAC46   --------->ANAC58     =====================HOX2a_HOX2a  --------->ALFIN1        <---------ANAC58   --------->ANAC58  --------->LBD16 --------->ARR11(3) <---------ANAC58       <------NtERF2      --------->LBD16    ------>NtERF2   <---------AGP1  <---------bZIP60(1)       <---------LBD16    <---------LBD16   --------->DEAR3(1) ------>ZmHOX2a(2)<---------ANAC58   ------>ZmHOX2a(2)      --------->ANAC46 --------->ATERF1(1)<------ZmHOX2a(2) <---------ANAC46   ==========================HOX2a_HOX2a   <---------------------WRI1 <-----------RAV1(2)  <------ZmHOX2a(2)     <---------ALFIN1   <------NtERF2     <---------ARR11(3) <---------bZIP60(2)  ===========================HOX2a_HOX2a  ------>NtERF2  --------->YAB1 --------->At4g35610 ------RAV1(2)        ------>ZmHOX2a(1)<-----------HVH21<---------ATHB12<---------At4g35610   ggcgatcgtggcggaagtgtaatcctcccccgcataatctttgtcgccgaggaagacaatgaagatctcgaagcaggtgatgtcgtggtgggacttgatc  18970500                                                                           <------NtERF2                                                           <---------At4g35610                                                        ------>ZmHOX2a(1)  --------->ATERF1(1)                                                   --------->bZIP60(2)    --------->LBD16                                                  --------->LBD16        <---------ANAC58                                                  <---------ATERF1(1)    <---------ANAC46                                                  ------>NtERF2          <---------DEAR3(1)                                                  <------NtERF2          <---------ANAC58                                                 --------->DEAR3(1)     --------->ATERF1(1)                                                --------->ATERF1(1)     <------NtERF2            ----                                               --------->LBD16          <-----------------------TaNAC69(2)                                               ------>NtERF2            <---------LBD16        <-----                                               <---------ATERF1(1)    <---------DEAR3(1)       <-----                                              --------->ANAC46     <---------AtMYB61    <-------MYC2   <------NtERF2                       --------->ARR11(3)  --------->At4g35610<------ZmHOX2a(1)------  <---------RAP2.6(3)                  <---------ARR11(3)<-----------RAV1(2)  =======================  <-----------HVH21          <---------DAG2   --------->DEAR3(1) <----------DOF2        ------->MYC2  <-----------TGA1           <----------DOF2  <---------ALFIN1  <---------ANAC58        ------->MYC3 --------->RAP2.6(2)      <---------ALFIN1 --------->AtMYB61    <---------ANAC58        <-------MYC3   aagccgtcatcaactcataccctaagttccacttttccaaagatacctccgccgcgtcctcagatggctttggtggcggaggagacacaacgtgctcgat  18970600                                                                                                    <                                                                                                   <-                                                                                                   <-                                 <------ZmHOX2a(1)                                                 <-                           --------->At4g35610                                                     --                          --------->GLK1(2)                                          <---------ANAC58                        --------->GLK1(1)     ----------->GT1                        <---------ANAC46                        <---------GLK1(1)     <---------ZAT6                         <---------ANAC58                        <---------At4g35610 <---------ANAC46                    <---------ANAC46   -- -->ZmHOX2a(2)         ----------->ARR10   <------NtERF2                        <---------ANAC58   -- ----AGP1              --------->ARR14(2) --------->LBD16                       <---------ANAC58   <- ----ARR14(2)          <---------ARR14(2)<---------ANAC46                       --------->ALFIN1  <-- --->ARR14(2)---------->DOF2   <---------TOE2(3)    --------->ZAT6      <---------ANAC46      ------- ===HOX2a_HOX2a    --------->At4g35610  <---------LBD16            <-----------RAV1(1)     --------->ANAC46   ctgtttatgtgagtataaagaagcggagatgctgaggatgatgccggagtgtaaacactacttccatttgtgttgccttgatgcgtggcttaaactcaac  18970700  Previous    Next  AGI:  At2g46160.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to RING-H2 finger protein ATL2M (ATL2M) [Arabidopsis Thaliana] (GB:O82353); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G61550.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73279.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39657.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABD28581.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 18970156    to: 18970958    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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