Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          --------->LBD16                                                       <---------ANAC58                                                       <---------ANAC46                                                       <---------ANAC58                                                    ------>ZmHOX2a(2)                                                    ==============================HOX2a_HOX2a                                                   <---------At4g35610                            <--                                <---------WRKY18(1)--------->At4g35610                       --------                      <---------ZAT2              --------->ARR14(2)                         <-------                      --------->ZAT2       <---------HSFC1(2)                               <--------    --------->DAG2    --------->At4g35610  --------->HSFC1(2)                               <--------   ---------->DOF2    <---------STY1(2)    --------->HSFB2a(1)                              <-------- ---------ID1    --------->ANAC58     --------->HSFB2a(2)                   <---------ARR14(2)   <--- ------>DOF2     --------->ANAC58     <---------HSFB2a(2)                  ==============HOX2a_HOX2a ------------->ANAC81 <---------At4g35610  <---------HSFB2a(1)     ---------->DOF2<------ZmHOX2a(2) >GT1     ----------->GT1      ----------->HVH21  <---------ARR14(2)       <------ZmHOX2a(1)<--------   aaagaaaaagggaagtaagaagccagctagggtttgactgcgagaaatttctgatctgcgtgaatttctcaaagagaggaatcgatcatcgattccgtgg  18930000                                                 <-----------ARR10                                                 <---------ARR11(3)                                                 <---------AGP1                  <----------DOF2                                                 <---------ARR14(2)         ------>NtERF2 <---------ANAC58                                --------->ARR11(3)         --------->LBD16 <---------ANAC58              <---------HSFB2a(2)<------ZmHOX2a(2)        --------->ANAC58 -------GLK1(1)                --------->HSFB2a(2)--------->At4g35610      --------->ANAC46 ->LBD16               <---------AHL20(2)       <------ZmHOX2a(1)          --------->ANAC58 --LBD16              <---------YAB1        ---------->DOF2      <---------MYB52(1) -ANAC55(1)          <---------AHL20(2) --------->At4g35610     <-------GAMYB ------>NtERF2 -ANAC46           <---------YAB1  --------->ANAC58         <-----------GT1--------->LBD16    <------ -ANAC58     <---------DAG2    <---------HSFC1(1)--------->GLK1(2)        <---------LBD16     ------- ------ARR14(2)  <---------AHL20(2)--------->ANAC58------>ZmHOX2a(2)<---------ANAC58<---------ANAC58 -ANAC58     <----------DOF2   --------->HSFC1(1)--------->ARR14(2) <---------ANAC58<---------ANAC58-   atttcgtttccctccctttttatttttatttttcgagaagccatctcaaaggatctgagtttataccgttgcatcccccgcgactttcgttttccgattt  18930100                                                         --------->DEAR3(1)                                                         ------->GAMYB                                               <---------ZAT18                                               <---------ZAT14                                               --------->ZAT18               <---------ARR14(2)           <---------ANAC58          --------->AtLEC2                  --------->ALFIN1    --------->ARR14(2)                      <---------ANAC58    <---------ARR14(2)                    <---------ANAC46 ------>MYB83 ---GLK1(1)    --------->GLK1(2)          --------->ALFIN1 ------>MYB46(1) -->GLK1(1)   <---------CCA1(2)        --------->DAG2   --------->DEAR3(2)                        <-- -------->LBD16<-----------ARR10     ---------->DOF2    --------->MYB46(3)                       <---   cccccaaattcgatgcaaatctaagaagagagagaaatagaaaggtgtgtgcgcttcaaccgactcagtgtctctctctctctctctctctctctctctc  18930200                                                                         <------MYB46(1)                                                                         <------MYB83                                                                       <--------P                                                                     <---------ANAC58                               <---------ATERF1(1)                   <---------ANAC58         <---------TOE1(3)    <---------DEAR3(1)                     <---------ANAC46         <---------TOE2(3)    <---------RAP2.3(3)               --------->ATHB12   <---------------AGL15     --------->LBD16                    <---------AHL20(2)   <----------DOF2   --------------->AGL15   <---------LBD16                    <-----------TBP   <-----------GT1  <-----------------AGL2  <---------LBD16          <----------DOF2  <---------MYB46(3) -----GAMYB         <----------DOF2      <---------SPL7       <----------DOF2  <-----------GT1 ------ --------RAV1(1)<-----------GT1------>NtERF2   --------->ARR14(2)<------------CBF    <---------DAG2   tgttgctatttgaggttttttcctttgcctcgggggctctcgctgtccgaattcttttgtagggatttattgggtagggtttttccactttttttttgtc  18930300                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                                  ---                                                                                                -----                                                                                                -----                                                                        <---------ANAC58       <-----                                                                        <---------ANAC58       ------                                                        --------->ARR14(2)                    <------                              <------------CBF          <---------ARR14(2) ------------>CBF  <-------                            <---------AHL20(2)         <---------At4g35610--------->AtLEC2   <-------                        <---------ANAC46           <-----------HVH21    <---------AtLEC2     <-------                    <------------CBF      <---------ZAT14           <------------CBF         <-------                  --------->ZAT18         --------->REM1(2)      ------------>CBF     <------NtERF2--              <---------MYB52(1)    >>>>>>>>>>>>>>>>>LFY<---------GLK1(2) --------->ANAC58  <-------- ---->ID1  <-------TEIL ----------->GT1   --------->ZAT14--------->GLK1(2)--------->ANAC58--------->ALFIN1   ttcttctactagcttcgttgtgcattgggtttaattgtttccagtgtagtgactgtcagattcttcgaccaattgcatgcaatctggaggcagtggcgga  18930400      --------->ANAC58      --------->ANAC58                                   <---------At4g35610   <------NtERF2                                      --------->LBD16  --------->ANAC58                                    <---------At4g35610  --------->ANAC58                                    --------->At4g35610 ------->PCF2                                        --------->ANAC46 --------PCF5                                       --------->MYB46(3)                           ---- ------->PCF5                                  <-----------HVH21                               ------ --------PCF2                     <---------SPL7--------->TGA2(2)                             ------- -------->TCP11(1)       <---------RAP2.6(2)  --------->TGA1a                               <-------- ------>ATERF1(1)       --------->ATERF1(1)   --------->ANAC58                              --------- ---->SPL7              <---------LBD16       --------->bZIP60(2)                          ---------- ---->ALFIN1            --------->SPL7        --------->O2                               <---------At4g35610 -NtERF2              --------->TCP20  --------->At4g35610                               --------->At4g35610 --->ATERF1(1)        <---------ARR14(2)      <---------O2                               <---------ZAT2 ---SPL7       ------>NtERF2     --------->ETT(1)  <---------At4g35610                   --------->ZAT2 --ANAC58     --------->LBD16 <------MYB83    --------->ANAC58                          ----------->RAV1(1) --ANAC46 --------->GLK1(2)<---------ZAT2   <---------ALFIN1                     --------->At4g35610 --DEAR3(1) <---------LBD16<---------MYB52(1) --------->ANAC46                   <---------At4g35610- --ANAC58 <---------ARR14(2)  <------MYB46(1)<-----------STF1              ------>ZmHOX2a(1)--------- ------->TCP16(1)     <---------PCF2   <---------At4g35610           <<<<<<<<<TBF1    --------->ZAT14 -LBD16   --------->ARR14(2) <---------MYB46(3)<-----------TGA1  ------>ZmHOX2a(1)    <---------ZAT14   gggcccgctcggaatccggccatgggtccggctggtcggactgcttccacgtcatccgctgcttctccttcttcttcctcttcatctgtgcagcagcagc  18930500                               --------->ZAT2                               <---------At4g35610                               --------->At4g35610                               <---------ZAT2                            <---------At4g35610                           ------->GAMYB      --------->At4g35610                        ----------->RAV1(1)   --------->ANAC58                  ----------->RAV1(1) <------NtERF2                              <---------YAB1         ----------->RAV1(1)--------->At4g35610                                <---------ICU4   ----------->RAV1(1)  ===================RAV--------->ANAC58                <---------MYB52(1) ------->RAV1(1)  =========================RAV<------MYB83                   <-------GAMYB --->At4g35610  --------->At4g35610 <---------ANAC46  <---------GLK1(2)     --------->MYB52(2) -->RAP2.6(2)  --------->RAP2.6(2)  <---------ANAC58  <---------ARR14(2)   <-------TEIL -At4g35610  --------->At4g35610    <---------ANAC58  --------->ARR14(2)<------MYB46(1) >At4g35610 ------->GAMYB --------->MYB46(3)  <------MYB46(1)           <---------MYB46(3)      ----- ->RAV1(1) --------->MYB46(3)  ----------->RAV1(2)   <------ZmHOX2a(1)  <------MYB83         -------- ------>GAMYB<---------At4g35610--------->ATERF1(1)<---------TOE2(3)   --------->MYB59      --------- >ZAT2------->GAMYB  ------->GAMYB <------NtERF2 ---------->DOF2     <---------MYB52(1)  <------ZmHOX2a(1)   aacagcaacagcaacagcagcaacagcaacagcagctggcgtctaggcaggtaaaggattctcaagtctctgtttggttcgttatgacttaggagggata  18930600      <---------ANAC46  <---------ANAC58                      --------->LBD16                                      --------  <---------ANAC58                     <---------ANAC46                                      -------- ---->AHL20(2)                         <---------RAP2.6(2)      <---------WRKY18(1)   ---------->DOF2 --->GT1                     <-------GAMYB     <---------AHL20(2)       <-----------GT1    ---------- -->GT1            <---------TOE2(3)  <---------LBD16          ----------->HVH21<---------ANAC46  ---   aaatgcttgtttgtagtggctaatgtttgtctgttaaacttgcggctattcaattttagtgggacttgactgtttatcaattctgtgtaaaaggaaagta  18930700        <---------AHL20(2)        --------->AHL20(2)      --------->TOE2(3)   <---------AHL20(1)   --------->ARR11(3)   <---------ARR11(3)  <---------CCA1(2) ->ANAC58      <---------TOE2(3) ->ANAC58<---------AHL20(2)        --------->O2                      <---------AHL20(2) >DOF2<----------DOF2              <---------O2                      --------->AHL20(2)         <---- ------>MYB46(3)     <---------ANAC46  --------->HSFB2a(2)         --------->AHL20(2)        <-------   accaatatctttaaattgaagttgtgtaatggtagccacttggagaacatgttttgttcatttccacatatatatatagttgctctgaattgtggattat  18930800                                                       <---------At4g35610                                                       --------->At4g35610                                                      ----------->RAV1(1)                         <---------ANAC58           <---------At4g35610                         <---------ANAC58           --------->At4g35610                   --------->YAB1                   --------->ZAT2                   -------->HAHB4                --------->ZAT2                   <--------HAHB4                --------->At4g35610                   -------->ATHB1                <---------At4g35610                   <---------ICU4               ----------->RAV1(1)                   <---------AHL20(2)         --------->ZAT2                  <---------ATHB12            --------->At4g35610                  --------->ICU4              <---------At4g35610                  <---------YAB1             ----------->RAV1(1)            --------->ANAC58                  <---------ATHB51         <------NtERF2                    --------->ANAC58                <---------ICU4             <---------At4g35610            --------->MYB52(1)         <---------MYB46(3)                --------->At4g35610         <-------TEIL        <---------WOX13(1)                 --------->ZAT2            --------->ARR14(2)          ----     <---------YAB1--------->ATHB51        <---------ZAT2    <---------GLK1(2)      <---------YAB1--- -----YAB1  <-----------GT1    <---------At4g35610 ----------->RAV1(1)--------->CCA1(2)          ---- --YAB1>>>>>>>>>ARR2 <---------YAB1      XXXXXXXXXXXXXXXXXXXX>MIR834 <---------ARR14(2)   <---------AtLEC2   tgttcatttgattgttactaattattatcgtgcttctgatatggcagcagcagcagcagcacagaaactcagatacaaacgaaaatatgtttgcatatca  18930900  Previous    Next  AGI:  At2g46020.1    Description:  ATBRM/BRM/CHR2 (ARABIDOPSIS THALIANA BRAHMA); ATP binding / DNA binding / helicase/ transcription regulator. similar to SYD (SPLAYED) [Arabidopsis thaliana] (TAIR:AT2G28290.2); similar to SYD (SPLAYED) [Arabidopsis thaliana] (TAIR:AT2G28290.1); similar to SYD (SPLAYED) [Arabidopsis thaliana] (TAIR:AT2G28290.3); similar to hypothetical protein [Vitis vinifera] (GB:CAN74059.1); similar to hypothetical protein OsJ_004964 [Oryza sativa (japonica cultivar-group)] (GB:EAZ21481.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39636.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Bromodomain (In Range:  from: 18930377    to: 18938842    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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