Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 <---------------AGL15                                               --------------->AGL15                                              ----------------->AGL2                                              ----------------->AGL3                                              <-----------------AGL3                                     --------->ZAT6         --------->ICU4             <---------YAB1   --------->DAG2                 <---------ICU4                         <---------AHL20(2)        --  ---------->DOF2                 --------->YAB1                 ---------->DOF2        <---------REM1(1) ----->AHL20(2)           ----------->GT1--------->YAB1    ----------->GT1           <-----------RAV1(1)   aaaataaagtaattgttgggaatggagcatgtaaaattatcactcataactaaaattagcaatgttataaagtatttaagtaagaaaatgttgtagataa  18917000                                                                                 <-------TEIL                                  --------->At5g28300                          <-------GAMYB                                 <---------ANAC46      <-----------HVH21    <---------MYB52(1)                                <---------DEAR3(1)    ----------->HVH21   ------->GAMYB                               --------->ZAT18 <---------ANAC58          --------->MYB46(3)                               <-------TEIL <-------MYC2   <---------At4g35610<---------DEAR3(2)           --------->ALFIN1    <---------ABI4(1)      ------>ZmHOX2a(1)  <---------LBD16         <---------bZIP60(2)  --------->ALFIN1 <---------ANAC58--------->PCF5<---------DEAR3(1)         <---------ANAC58   <---------ANAC58------->MYC3   --------->At4g35610<---------MYB46(3)         <---------ANAC58   <---------ANAC58<-------MYC3<<<<<<<GRF7      --------->DEAR3(2) --------->GT1         <----------DOF2      ------->MYC2---------->DOF2--------->MYB52(1)  ----------   tttgttaaatgaggtgtccctatgtcttttaggtgcggtgagtccatgtgcttatcctgacagcggtccaacttaaccggcggttcatctcgaccacata  18917100                                                                                              -------                                                                                              <------                                                                                        --------->AHL20(1)                                           --------->ICU4                               <---------AHL20(1)                                         --------->YAB1                             <---------AHL20(2)                                       <-----------HVH21               --------->ZAT18  <---------AHL20(2)                                    <---------ANAC58                   <---------ETT(2) --------->AHL20(2)                                   -------->P              --------->TOE1(3)        --------->AHL20(2)                <---------YAB1    <-----------GT1          ----------->GT1         <---------AHL20(2)          <---------AHL20(2)    <---------ANAC58           --------->TOE2(3)   <---------AHL20(1)      <---------DAG2            <---------ANAC58          ----------->GT1      <---------AHL20(2)      <----------DOF2         <---------AHL20(2)         <---------TOE2(3)     --------->AHL20(2) <---------At4g35610 <-----------GT1<---------ANAC58  <---------AHL20(2)       --------->AHL20(1) ->RAV1(1)--------->AHL20(2)  <-----------GT1         --------->AHL20(2)      --------->AHL20(2)  <--   ttcaactgcttttttaatatgattttctgtattttcttacctgtcataatctacatttaaacgttaaaaaatgtccacaattttatttattttattaggg  18917200                                                                                  ------------>CBF                                                                                --------->WOX13(1)                                                                              <---------YAB1                                                                             --------->TOE2(3)                                                                         --------->YAB1                                                                         <---------ICU4                                                                        --------->ICU4                                                                      --------->YAB1                                                                     --------->AHL20(2)                                                                     <---------AHL20(2)   --------->MYB52(1)                                      <---------ETT(2) <--------HAHB4   --------   <---------ICU4         --------->AHL20(2)               --------->ETT(2) --------->YAB1 --------->ANAC58   --------->YAB1       ----------->GT1            XXXXXXXXXXXXXXXXXXX>MIR394A/B--------->YAB1     -- -------->AtSPL8      ---------->DOF2        <---------ARR14(2)    --------->TOE2(3)   --------->YAB1 ---------AtSPL8   <---------ZAT6            --------->ARR14(2)    <----------DOF2<---------ATHB12<-- -----TEIL   --------->ATHB12        ---------->DOF2       <---------ZAT18 <---------YAB1  --------->ANAC58   tacaataacgacatttgattagagtaaagaaaatagttgcaaagcgggatttgaaactctgtccacatactttaattatcattaatcaataacaagcatt  18917300                             --------->DOF5.7(2)                            --------->TOE2(3)                          <---------TOE2(3)                          <---------TOE1(3)                      --------->YAB1                     <---------YAB1                   --------->YAB1                  --------->ICU4                ---------->DOF2           <---------At4g35610           --------->ZAT2<---------DOF5.7(2)--------->AtLEC2           --------->At4g35610              --------->ANAC58          ----------->RAV1(1)<---------MYB52(1)                     *TSS        <---------At4g35610 --------->TOE1(3)------------>CBF   <-----------GT1 ->YAB1 --------->At4g35610----------->GT1  --------->ANAC58   <---------AHL20(2) ------->ZAT6 --------->At4g35610         --------->YAB1       --------->AHL20(2) -------YAB1 ----------->RAV1(1)  --------->YAB1    <---------TOE2(3) --------->YAB1  <---------AHL20(2)   atcagtattcagcagcagcaaagatgataacgttaattatactatcatgcaattaagttaactaattaactatcatcttgtttatgttttaattttgttt  18917400                                         <---------ALFIN1                                         --------->AtMYB61                                        --------->MYB46(3)                                       ------>NtERF2                     ------>MYB46(1)                                      --------->RAP2.6(2)        --------->ANAC55(2)                                   --------->ANAC58              --------->ANAC46            --------->TOE2(3)      --------->ANAC46              --------->ANAC55(1)          ------>MYB83             --------->ANAC58              <---------ANAC55(2)          -------->P             ---------->DOF2               <---------ALFIN1          ------>MYB46(1)      --------->YAB1                ----------->RAV1(1)               ------   --------->At4g35610      <---------------AGL15    <----------DOF2     ------>MYB83      ---------- --------->YAB1             --------------->AGL15  <---------At4g35610 ------->GAMYB   --------->TOE1(2)   ccatcatcttccaaccttgagtttcggtcactataaaaagccaccactctctctgcttctctgcaacacataacccactcacagaaaaacctagaaagct  18917500                                                                                     --------->HSFC1(2)                                                                                     --------->HSFB2a(1)                                                                                     <---------HSFC1(2)                                                                                     <---------HSFB2a(1)                                                                                <------ZmHOX2a(2)                                                                               --------->MYB52(1)                                                                               --------->ARR14(2)                                                                            --------->MYB46(3)                                                                 <---------ANAC46------>ZmHOX2a(2)                                                                 <---------HSFB2a(2)--------->ARR14(2)                                                    --------->ZAT2        --------->MYB52(1)  -------                                                    <---------At4g35610--------->ANAC58    --------->At4g35610                            ---------->DOF2         --------->At4g35610--------->ANAC58    <---------At4g35610                         ----------->GT1          <------NtERF2  --------->HSFB2a(2)<---------ARR14(2)     ---------->DOF2     <------MYB83 --------->ARR11(3)        <---------LBD16<---------ARR14(2)  -- --->ARR11(3)            <------MYB46(1)        <---------DEAR3(1)--------->LBD16==================== >DOF2            --------->CCA1(2)   <---------ARR11(3)      <---------ARR14(2)=====================   ctagagagaaagagagagagagatggaaggtaaagaagaagatgttagagtcggagctaacaagtttccggagaggcaaccgatcggaacttcggctcag  18917600                                  <---------MYB46(3)                                <-------GAMYB                               --------->DEAR3(1)                              <------NtERF2                             <---------RAP2.3(1)                          <---------ATERF1(1)                         ------->PIF5                         <-------PIF5                      <---------ALFIN1                   <-------TEIL                      --------->DEAR3(1)          --------->ZAT2                    <---------At4g35610                      --------->AtMYB61           --------->STY1(2)        --------->At4g35610      <------ZmHOX2a(1) --------->ZAT2            <---------ZAT2           <---------At4g35610    --------->ANAC58 --------->MYB46(3)           <---------STY1(2)        <---------ZAT2    --------->ANAC58------>NtERF2<---------MYB52(1)     <----------DOF2    --------->ZAT2 --->CDC5   ---------->DOF2  ------>NtERF2    <------NtERF2          <---------HSFB2a(2) --------->HVH21  --------->MYB46(3)         --------->LBD16         --------->HSFB2a(2) ============HOX2a_HOX2a<---------ZAT2      <---------DEAR3(1)    ------>ZmHOX2a(1) --------->At4g35610 ============HOX2a_HOX2a----------->RAV1(2)<---------LBD16xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       <-   agtgacaaggactacaaagagccaccacctgcgccgttgttcgagcccggcgagctagcttcatggtccttctggagagctgggattgctgagtttatag  18917700                                                                  <---------ANAC58                                                                 <---------At4g35610                                                        ------>MYB83                                                        ------>MYB46(1)                                                     --------->ANAC58                                                  ----------->HVH21                                           <---------ZAT14       --------->At4g35610                                           --------->REM1(2) ------->MYC3                                          ----------->HVH21  <-------MYC3                                      <---------ANAC58--------->DEAR3(1)                         <---                                      <---------ANAC58--------->MYB46(3)                  <---------ANAC46                --------->ANAC46    <---------ANAC46 --------->ANAC58 <---------ANAC58    <---------ANAC58            ------>ZmHOX2a(1)   <-------GAMYB    <-----------HVH21<---------ANAC58<---------TOE1(2) ------TEIL--------------->AtSPL8<---------MYB52(1)<---------WRKY38(1)<---------ANAC58    <---------ANAC58   ctacgtttttgttcctgtacatcactgttttgactgttatgggtgtgaagaggtcaccgaacatgtgtgcttccgtcggaatccaaggtatcgcttgggc  18917800                                                                                                    <                                                                                             ------>ZmHOX2a(1)                                       <---------CCA1(2)                                 --------->AGP1                                  <---------At4g35610                                    <---------ARR11(3)                                 --------->DEAR3(1)  --------->ZAT14                     <---------GLK1(2)          <-----------ARR10   <---------ALFIN1       <---------ZAT14                     --------->ARR14(2)          <---------ARR11(3) --------->ZAT14         --------->ZAT18                     <---------ARR14(2)          --------->ARR11(3) <---------ZAT14    <--------P               <---------TOE2(3) ------>ZmHOX2a(2)        ----------->ARR10  --------->ANAC46    <---------MYB52(1)       --------->MYB52(1)<------ZmHOX2a(2)    <---------MYB46(3)    --------->At4g35610 --------->LBD16        <------ZmHOX2a(2)   --------->ARR11(3) -------DOF2------>ZmHOX2a(2)--------->ZAT18<---------LBD16          ===============================HOX2a_HOX2a   tttcggtggtatgatcttcgctctcgtctactgcaccgctggtatctccggtaagttcactggtttctccgatctaacgatttcgaatatagatcctgtg  18917900  Previous    Next  AGI:  At2g45960.1    Description:  PIP1B (plasma membrane intrinsic protein 1;2); water channel. Identical to Aquaporin PIP1-2 (PIP1-2) [Arabidopsis Thaliana] (GB:Q06611;GB:Q8L5V4); similar to PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) [Arabidopsis thaliana] (TAIR:AT3G61430.2); similar to PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A), water channel [Arabidopsis thaliana] (TAIR:AT3G61430.1); similar to aquaporin PIP1b1 [Brassica oleracea] (GB:AAG23179.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) Range:  from: 18917368    to: 18919055    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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