Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                  --------->At4g35610                                 <------NtERF2                                                 ------                                 ------>NtERF2                                               ------>NtERF2                               <---------ANAC58                                          --------->ANAC58  --------->AHL20(2)           <---------ANAC58                                          --------->ANAC46 ---------->GT1                <---------ANAC46         <----------DOF2        ------>ZmHOX2a(1) ------->DOF2               <-----------RAV1(1) <-----------RAV1(1)    --------->TOE2(3) --------->ANAC58 --->GT1               <----------DOF2      --------->ARR11(3)       ------->TEIL      --------->MYB52(1)   aaaagaaaatagggctaagaattgacttttatggcgggctgaaattgatattgttgggctttgaagaattgcaccttagtcctgagcccaaacgacacca  18861900                                      <-----------------AGL1                                    --------->DEAR3(1)                                    --------->AtMYB61                                       <--------                                    <---------ALFIN1                                <---------DEAR3(1)                                   <---------MYB55(2)                             <-----------HVH21                                   --------->MYB46(3)                            --------->ANAC46                                 --------->AtMYB61                            ------>ZmHOX2a(2)                                --------->MYB46(3)    <---------GLK1(1)      <---------GLK1(1)                            --------->MYB46(3)        --------->ARR14(2)     <------ZmHOX2a(2)  -----         --------->ANAC46 ----------->RAV1(1)   --------->ARR14(2)           --------->GLK1(1)  <----        --------->SPL7 ------>ZmHOX2a(1) --------->DOF5.7(2)                <---------ARR11(3)  -----        --------->RAP2.6(3)--------->ANAC46<---------DOF5.7(2)        <-----------HVH21   <---------WOX13(1)       --------->MYB52(1)<---------ALFIN1<---------MYB52(1)--------->LBD16  --------->ARR14(2)  ----- --->AtMYB61 ---------->DOF2--------->AtMYB61   <---------ARR14(2)   --------->ANAC46<---------At4g35610   tctctaatcttacggcaaagcagtcctccaccagaccaccaccgttatcggaaacgaattccccagtctctccgtcgcgatctccgtcgctgattgtcac  18862000                                                                               --------->ARR14(2)                                                                 <---------GLK1(2)                                                                 --------->ARR11(3)            <-----                                                                 --------->ARR14(2)            <-----                                                                 <---------ARR11(3)     ------>NtERF2                                                                 --------->AGP1<---------ARR11(3)                                                                 <---------ARR14(2)    --------->ANAC46                                                      ------->GAMYB------>ZmHOX2a(2)   --------->DEAR3(1)                         <---------YAB1               --------->RAP2.6(2)      --------->GLK1(2)   <---------YAB1        <---------AHL20(2)           --------->DEAR3(1)       <-----------ARR10 <-----------GT1        <---------AHL20(2)            --------->DREB2C(2)      --------->ARR11(3) ---HVH21 --------->ANAC46         <-----------GT1   --------->DEAR3(2)        <---------ARR14(2) <-- ---->ANAC55(2)      <---------AHL20(1)              --------->MYB46(3)       <---------CCA1(2)<----- -----ANAC55(2)      --------->ARR11(3)            <---------ARR14(2) ---------->DOF2  --------->DREB2C(2) ---->ANAC58         <---------ARR11(3)            --------->ARR14(2)------>ZmHOX2a(1)--------->MYB46(3) ---->ANAC58         --------->AHL20(1)          ----------->ARR10<------ZmHOX2a(2)  <---------At5g28300   gaattacgattcacgaagccgaatatttttattgaaataaccattagaacttagaaccgccaaaacagatcctagagcgagtatcttcaccgccatagcg  18862100                                  ----------->HVH21                                  --------->DEAR3(1)                                  --------->RAP2.3(2)                                  --------->At1g77200                                  --------->RAP2.3(3)                                  --------->DREB2C(2)                                 --------->DEAR3(2)                                 --------->RAP2.3(1)                                 --------->ATERF1(1)                      ------>ZmHOX2a(2)                     --------->GLK1(1)                     <------ZmHOX2a(2)                    --------->ARR14(2)                    <---------ARR14(2)                    --------->ARR11(3)                    <---------ARR14(3)                    --------->ARR14(3)                    <-----------ARR10     --------->AHL20(2)                    <---------ARR11(1)    <---------AHL20(2)                            <------MYB83                    <---------ARR11(3)    <---------YAB1                    <---------At4g35610                <---------LBD16  --------->RRTF1(1)        <---------ARR14(2)           ----------->GT1 --------->ANAC58  <---------ARR14(1)    --------->AHL20(2)--------->MYB52(1)           <------MYB46(1) --------->AtLEC2  <---------CCA1(2)<------NtERF2          --------->ARR14(2) ----------->HVH21 --------->ANAC58 --------->LBD16--------->ORA47(2)     --------->TOE2(3)   --------->At4g35610 ----ANAC46     <---------At4g35610------>NtERF2        --------->TOE1(3) --------->MYB46(3)      --- ----ANAC58 <-----------TGA1     --------->ERF1----------->GT1  <---------MYB52(1)------>ZmHOX2a(2) -----TEIL  <-----------HVH21    <------NtERF2--------->YAB1 <------------MYB.PH3(1)   <---------TOE2(3) ----ANAC58--------->ANAC46     <---------RAP2.3(1)     --------->YAB1   ------->TEIL  --------->MYB59   ttcatgcaagtcttcgtcaccggatcttcactagcgccgacgatataattagaaaaaaccataaccgtttctctgaaccgctgatcgattaggttatata  18862200                          ---------->DOF2                   ------>ZmHOX2a(1)                  --------->TOE2(3)                 ------>ZmHOX2a(2)                 ======================HOX2a_HOX2a                <------ZmHOX2a(2)                =======================HOX2a_HOX2a               --------->ARR14(2)               <---------ARR14(2)               --------->ARR14(3)                                                        <---------ICU4               <---------ARR14(3)                                                       --------->ICU4               <---------GLK1(2)                                       <---------ARR11(3)--------->YAB1               --------->ARR11(3)<---------ARR14(2)          ------>ZmHOX2a(1)  <---------CCA1(2)               <---------ARR11(3)--------->ARR14(2)         --------->TOE2(3) <---------CCA1(2)       <----------DOF2 --------->ANAC46                   *TSS         --------->ARR11(3)-------->HAHB4 ------->DOF2----------->ARR10  <------ZmHOX2a(1)   <-----------GT1    <---------GLK1(2)<---------ATHB12   caaagaagacttttgaagatcctcaacgtaaagaggattcgattctagggtttttttcttctccttagtgcgagattttcttatctcttaatgatgaagt  18862300                  <---------ANAC58                  <---------ANAC58                                     <---------ANAC55(2)                  <---------ANAC46                             <---------MYB52(1)                <------MYB83             <-----------TBP      <-------GAMYB              <-------GAMYB                <------MYB46(1)      <----------DOF2       <---------At5g28300        <---------At5g28300              <---------WOX13(1)     --------------->AGL15<-----------GT1          <----------DOF2             <------------CBF    <-----------GT1          ------------>MYB.PH3(1)--------->LBD16            --------->ATHB12  <---------AHL20(2)       <---------ICU4  --------->ANAC55(2)<---------MYB52(1)        <---------AHL20(2)   --------->AHL20(2)       --------->AHL20(1)       <---------LBD16      <-----------TBP        <---------AHL20(2)       <---------AHL20(1)  --------->ARR14(2)  --------->ANAC55(2)        <---------AHL20(1)       <---------ARR11(3)  <---------GLK1(2)  <-------  <---------ANAC55(2)    <---------AHL20(2)           --------->AHL20(2)  <---------ARR14(2) <-------   aagtccgtatttatagattggtgtgagttaattaatttcctttttttataaaacaaaatattaccgttacattacatattctccggtttaccgttgcata  18862400                                                           --------->ANAC58                                                           --------->ANAC46                                                           --------->ANAC58                                                          <---------ZAT18                                                          --------->ZAT18                                                        --------->ZAT18                                                        <---------ZAT18                                                        --------->ZAT14                                                     <---------ANAC46                                                   <---------ZAT14                                                   --------->ZAT14                 <---------ANAC46                   <---------ANAC58             <---------ANAC46             --------->ATHB12 --ANAC58          <---------ANAC58           <---------ANAC46              <---------YAB1    ------- --ANAC58    <---------TOE2(3)         <---------TOE2(3)<---------ZAT14------>ZmHOX2a(1)    <-------TEIL   caaccgtttaatataaacgttgcatacaaccgtttaatataaacgttgctgtgtgaagtgcacgctcttgttcctcttatcatttgtgtgaaaatacatc  18862500                                                                                         --------->YAB1                        --------->ZAT18                                          --------->CCA1(2)                        --------->ZAT14                                        --------->YAB1   <-----------GT1      <---------ZAT14             ---------->DOF2           <---------YAB1       -- --------->ARR11(3)     <---------ZAT18       ----------->GT1               <---------ICU4     <----- -->TOE2(3)      <-----------HVH21     <---------AHL20(2)                   --------->YAB1   <-------   aaatatcaccttgtttttttgtcaagtgctctcgtttgaatttttttttggttataaagtcatatttcccaatttgcataatgatatacaaatataaacc  18862600                      <---------MYB52(1)                    --------------->AGL15                    <---------------AGL15                 <---------AHL20(2)                   ----------------->AGL3                 --------->AHL20(2)         --------->DAG2                                   --------->AHL20(1)         ---------->DOF2                                 --------->AHL20(2)   <-----------------AGL1                             <---------AHL20(2)   ----------------->AGL1                             --------->AHL20(2) ------->SPL7      ----------------->AGL2            --------->AHL20(2)  <------NtERF2             <- ----LBD16--------->DAG2                    <---------ANAC58          ------>NtERF2                <- ----GT1---------->DOF2                     <---------ANAC58        <---------RAP2.6(2)           ---   ggatggcccaaaaaggcgaaaaccattagtagtactggcccaaattgcttcttcataaaattaattgttttcggcctcaatactatttcatgttttttgg  18862700                                                                                                   --                                                                                                =====                                                                                                -----                                                                                        --------->MYB46(3)                                                                                        <---------ATHB12                                                                                       ------>MYB46(1)                                                                                       ------>MYB83<-                                                                                      --------->WOX13(1)                                                   --------->YAB1                   ------------>CBF                                        <---------MYB46(3)                   <---------AHL20(2) =====          --------------->AtSPL8     <------ZmHOX2a(1)               --------->ICU4 --------->MYB46(3) --------WRKY38(1)          --------->TOE2(3)  ---------->DOF2       <---------YAB1-------->P  ------ --------WRKY12     --------->AHL20(2)  ----------->GT1          <-----------HVH21--------->WOX13(1) ------>WRKY18(1) <----------DOF2  <---------TOE2(3)    --------->ICU4   --------->AHL20(2)  --------   gtcaacaacgtccaagtaccctttatataacataaataaggattgttagaaaagaataattttgatgtgtcacgattattttatcaaccaatcactgatc  18862800  Previous    Next  AGI:  At2g45780.1    Description:  other RNA Range:  from: 18861629    to: 18862258    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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