Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              <---------ANAC55(1)                                                            <---------ANAC58                                                            <---------ANAC55(2)                                                            --------->ANAC55(2)                                                          <-----------GT1                                                     <---------ANAC58                                                     <---------ANAC58                                                  <---------WOX13(1)                                                <---------ICU4                                                --------->ATHB12                           --------->ATHB12        <------NtERF2                           <--------ATHB1                            <---------YAB1       <---------RAP2.3(1)                     <---------YAB1                       <---------ARR11(3)       ------>NtERF2                          <---------WOX13(1)                    --------->ARR11(3) ------>TOE1(3)     --------->AHL20(2)   --------->At4g35610<---------ANAC46   <------ZmHOX2a(1) ------>TOE2(3)<---------ATHB12          <---------At4g35610<---------ANAC58 <---------TOE2(3) --->DOF2    --------->WOX13(1)  <---------YAB1--------->ICU4                <---------TOE1(3)   gcttaatggcgccatcaatgaatgaaatagttgatgtgattgtagctgaatgattgctagttacttgttgtgctcgtttgaggataaatcttatgatttc  18857900         <---------YAB1        --------->ARR11(3)        --------->CCA1(2)                                  --------->YAB1        <---------ARR11(3)       --------->ARR11(3)          ----------->GT1        <---------YAB1  -        <---------AHL20(1)       <---------ARR11(3)        --------->ICU4        --------------->AGL15       <---------CCA1(2) ---------->DOF2          ---------->DOF2  <---------AHL20(2)-------->HAHB4<-   aaatttccaatatctttgaaaatcgttcaaagtaagatataaacatacctttgaaagagaaattagtatataaacaaataaaactaattatagttttcaa  18858000                                                  --------->TOE2(3)                                               --------->ARR14(2)                           ---------                                               <---------ARR14(2)                           ---------            <---------YAB1                    <---------CCA1(2)                             ---------          <---------At4g35610                 --------->GLK1(1)                             ---------  <---------YAB1 <-----------GT1      <-----------GT1                                       --------- -------->YAB1 <---------WOX13(1)    --------->AHL20(2)                                     <-------- --------YAB1--------->ATHB12 --------->ZAT6  <---------GLK1(1)                        ---------->DOF2   aatgataactgtagatgattaactattttctctcactaatttactaacatatccttgataaaacttgtaatctagatagatagaatataaaaagacgtaa  18858100                                                      --------->AHL20(2)                                                      <---------AHL20(2)                                                     <---------YAB1                                                     --------->ICU4                                                  <---------YAB1                                                  --------->ICU4                                                 --------->AHL20(2)                                               <---------YAB1                                             --------->YAB1                                             <---------ICU4                                            <---------AHL20(2)                                          --------->YAB1                                        -----                                      <---------AHL20(2)                                      -------                                     <---------AHL20(2)                                     <--------  --------->YAB1                 <---------AHL20(2)--------->YAB1                      <---------ANAC58  --------->AHL20(2)           <---------RVE1(1) --------->AHL20(1)                    <---------ANAC46 >ANAC58                      <---------ARR14(2) <---------AHL20(2)              <---------TOE2(3) >ANAC55(1)                   --------->ARR14(2) <---------AHL20(1)             ---------->DOF2 <---- >ANAC46                      --------->ARR11(3)--------->YAB1                  <---------DOF5.7(2) >ANAC55(2)                   <---------ARR11(3)<---------ICU4                --------->DOF5.7(2)<--- >ANAC58--------->ANAC46     <------ZmHOX2a(1) --------->ICU4       <---------AHL20(2) <---------ANAC58 -ANAC55(2)                <---------TOE2(3)<---------YAB1          --------->AHL20(2)------>NtERF2   tctattatatacaaaacaaatttgtatttgaggattttttttatttataattataattaatagttttcaaaaaattaagcattaacgctgcgtttttcat  18858200                         <------------CBF                        --------->ATHB51                        --------->ATHB12                        <---------ICU4                       --------->ICU4                      --------------->AGL15            <---------ANAC46                      <---------------AGL15            ----------->GT1                     <-----------------AGL1           <---------At4g35610                     ----------------->AGL1           <------NtERF2                    <-------TEIL                  --------->ANAC58                 <------MYB46(1)                  --------->ANAC58                 <---------MYB46(3)           ---------->DOF2     <---------AHL20(2)<---------YAB1       --------->TOE2(3) ---->ICU4       <------MYB83              --------->ANAC58            <---------YAB1              <- -->YAB1       <---------WOX13(1)          --------->ANAC58         <---------YAB1                 <- ---GT1       --------->ARR14(2)           <---------ANAC55(2) ---------->DOF2                     -- -----YAB1    <---------ARR14(2)           ----------->GT1 ----------->TBP                  *TSS ---- ------ICU4   <------------CBF   ------------>CBF --------->ANAC46 <---------GLK1(2) ----------->GT1-   tattcatttttttgcagattggttcattattgggaaacaatagaaacgtaaaacgcagcgtataaaaaagattattatccagtaagtcagtaacttacac  18858300                                                                                      ===============                                                                                      ===============                                                                                      ------>ZmHOX2a(2)                                                                                     ================                                                                                     <------ZmHOX2a(2)                                                                                     ================                                                                                    --------->ARR14(2)             --------->MYB46(3)                              <---------CCA1(2)      <---------ARR14(2)             <------------AtMYB77                           ------->TEIL        --------->SPL7            <---------At4g35610                          <---------ANAC46      --------->MYB52(1)            --------->At4g35610                       ----------->HVH21       <---------SPL7 --------ARR14(2)                                     <---------SPL7       ------>ZmHOX2a(1) --------GLK1(2)                             <---------CCA1(2)             ==================HOX2a_HOX2a ------->ARR14(2)                --------->At4g35610  --------->LBD16      =================HOX2a_HOX2a ------->ARR10------->GAMYB      <---------At4g35610 --------->DEAR3(1)   ------------------>SPL14--- -------->GLK1(2)             <---------At4g35610   <---------LBD16  <---------MYB52(1)       <------   agattctctagcacaactgccatggcaacttcttctgctcacctctcgtttctcgccggacgtatatcgccgttctcctccgaacggatcggattatttc  18858400                                                                               ======================                                                                               <-------GAMYB                                                                              <---------DEAR3(2)                                                                      ----------->RAV1(2)                                                                      <------NtERF2                                               <---------SPL7         --------->At4g35610                                       --------->ABI4(2)              <---------ZAT2                                       <---------ZAT2                 <---------At4g35610                                  <---------LBD16--------->SPL7       --------->ZAT2                                --------->ARR14(2)                 <---------LBD16              <---------ANAC58  <---------ARR14(2)                <---------O2<------MYB46(1)      <------ZmHOX2a(1)<---------KAN4(2)       ----------->HVH21  --------->O2<---------MYB46(3) ====HOX2a_HOX2a    --------->ANAC58   --------->ZAT2     <---------ARR14(2)  <------MYB83          - ============HOX2a_HOX2a    <---------LBD16    <------NtERF2   <---------REM1(2)<---------MYB52(1) == ====HOX2a_HOX2a    --------->ANAC46 <---------MYB52(1)   --------->ARR14(2) <---------DEAR3(1)    -- ============HOX2a_HOX2a----------->HVH21   ------>NtERF2 <---------GLK1(2)<-----------HVH21  <------ --->ZmHOX2a(1)     --------->ANAC58--------->LBD16  --------->MYB52(1)<---------ANAC46  <------ZmHOX2a(1) -----GT1     <---------ANAC58--------->LBD16 --------->RAP2.6(2) --------->ANAC46     <---------TOE2(3)   ctctcagaggagaatttcgtccacgaatgacccggttccggtgctcggccggaccgagcggattcttcacgcggctgggtcggttgattaaggagaaggc  18858500      <---------TGA1a      <---------O2      --------->TGA1a      --------->O2      <---------bZIP60(2)                                                           --------->HSFB2a(1)      <---------ANAC46                                                              <---------HSFB2a(1)   ----------->HVH21       --------->ARR14(2)                                     <---------GLK1(2) ===============MYC_MYB    <---------ARR14(2)  <---------ARR11(3)              --------->HSFC1(1) -------->DAG2         <---------LBD16         --------->GLK1(2)               --------->HSFB2a(2) ===============bZIP_DOF   <---------GLK1(2)   --------->ARR11(3)              <---------HSFB2a(2) -------->DOF2       <-----------GT1--------->ZAT6                            <---------LBD16 ----ID1--------->ALFIN1 --------->LBD16  ----------->GT1          <---------ARR11(3)   caaaagcgacgtggagaaagttttctccggattctctaagactagggaaaatctagcagtcatcgacgagctcttactcttctggaatcttgctgaaaca  18858600                                                         --------->ATHB12                                                         -------->ATHB1                                                         <---------ICU4                                             --------->TOE2(3)   <---------GLK1(2) <-------TEIL   ---                                             --------->YAB1<---------YAB1       <---------At4g35610                                     ---------->DOF2     --------->ATHB51       --------->At4g35610--    --------->ARR11(3)        --------->AHL20(2)        <---------ATHB51      <-----------RAV1(2)----    <---------ARR11(3)        <---------AHL20(2)        --------->ICU4<---------LBD16            <---   gaccgagttcttgatgaattggaagaggttttttaattttaaagccatcttaattcgaattattgttgattctctgggtttcagatgcaaatggagtttc  18858700       ------>MYB83       ------>MYB46(1)      <---------------AGL15                                                                      ----      ========================================================MADS_MADS                         <----     --------->TOE2(3)                       <---------YAB1                                     -----     <---------MYB59                        <-----------------AGL2                             <----- ------>LBD16                               <-----------------AGL3                             ------ ------->LBD16     <--------ATHB1  <---------DAG2                                              ------ ------->RAV1(2)  --------->ICU4   <----------DOF2                           <---------ANAC46  <----- ------LBD16 <---------------------WRI1     <-----------------AGL1<---------ZAT6              <------ZmHOX2a(1)   cctgaaacctaatagtgggaataattcaatgtaggcgcttttggtttctgattttggaccgaagattactgttagaattgtggagaggctaagagaggat  18858800  Previous    Next  AGI:  At2g45770.1    Description:  CPFTSY (ferric reductase deficient 4); GTP binding. similar to FFC (FIFTY-FOUR CHLOROPLAST HOMOLOGUE), 7S RNA binding / GTP binding / mRNA binding [Arabidopsis thaliana] (TAIR:AT5G03940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24370.1); contains InterPro domain Signal recognition particle, SRP54 subunit, GTPase; (InterPro:IPR000897); contains InterPro domain Cell division transporter substrate-binding protein FtsY; (InterPro:IPR004390); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain Signal recognition particle, SRP54 subunit, helical bundle; (InterPro:IPR013822) Range:  from: 18858292    to: 18860783    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version