Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      --------->YAB1                      ---------->DOF2               --------->REM1(1)                            >>>>                 <---------ALFIN1                --------->TOE2(3)                        <---------GLK1(2)            <-----------GT1           --------->ANAC46      ------>ZmHOX2a(1)      --------->LBD16      <---------TOE2(3)        <---------ZAT6    --------->TOE1(3)                --------->ANAC46   tcagagcaaaggtttatcaacacatcaagctcagagttagactcaacaaaaccttcatcatcctcatggattccactatcaaacccgagacaaattctcg  18837200                                              <-----------GT1                                    --------->TOE1(3)                       <---------ARR11(3)          ------>MYB83              --------->TOE2(3)                    <----------DOF2          ------>MYB46(1)        <-----------GT1  <----------DOF2------>ZmHOX2a(1) >>>>>>GATA-1                  <---------MYB52(2)--------->TOE2(3)     ------>ZmHOX2a(1)        -----   atttcaataacctagcctccatcgaattacacaaataaccttcacgattcacctttatacagtcgtccttatcctctttatcttcttcaccaagagaaga  18837300                                                                                               ------                                                                                               <-----                                                                                               ======                                                                                              <------ZmHOX2a(2)                                                                                              =======                                                                                             <-------                                                                                         <---------LBD16                                                                                         ============                                                                                         ------>ZmHOX2a(2)                                                                                        =============                                                                                        --------->CCA1(2)                                                                                        <------ZmHOX2a(2)                                                                                        --------->ARR14(1)                                                                                       <---------ARR14(2)                                                                                       --------->ARR14(2)                                                                                       --------->AGP1                                                                                       --------->ARR11(3)                                                                                       --------->ARR11(1)                                                                                      --------->GLK1(1)                                                                                      <---------GLK1(1)                                                                                 --------->At4g35610                                                                              --------->At4g35610----                                                                            =========================                                                                            <------ZmHOX2a(1)--------                                --------->ZAT6                              ====================HOX2a_HOX2a                             --------->YAB1                      ====================================                           --------->ANAC58                      ====================================HOX2a_HOX2a                           --------->ANAC58                      ===============================HOX2a_HOX2a                          --------->WOX13(1)                     <------ZmHOX2a(1)   ----------->ARR10                  ------>ZmHOX2a(1)                      <-------TEIL       =========================HOX2a_HOX2a                  <---------HSFB2a(2)                   --------->CCA1(2)   ===================HOX2a_HOX2a           <---------GLK1(1)<---------ATHB12           --------->ARR11(3) --------->ALFIN1 --------->LBD16 ---->ARR11(3)    --------->HSFB2a(2)       --------->CCA1(2)    ==============================HOX2a_HOX2a   aattggaccattgaaatctcctagagagcaatcaacactagatgggatacaatctaagatacagtgaggagtagaagaggagcagaagagatccggatcc  18837400                                                                                               <XXXXX                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------MYB83                                                                                              <------MYB46(1)                                                                                             --------        <---------DEAR3(1)                                                                   <------MYB46(1)        <---------ANAC46                                                                     <-------       --------->ATERF1(1)                                                                 <--------P       <------NtERF2                                                                      <---------ANAC46     <---------DEAR3(1)                                                                   <---------ANAC58     --------->ALFIN1                                                                     <---------ANAC58    <------ZmHOX2a(1)                                                                     <-------GAMYB >ZmHOX2a(2)                         ------->GAMYB                                       <---------MYB46(3) ----LBD16<------NtERF2            --------->RAP2.6(3)              --------->At5g28300  --------->MYB55(2) ==========HOX2a_HOX2a            --------->MYB52(1)                <------NtERF2        <------MYB83 ==========HOX2a_HOX2a            <---------DOF5.7(2)              <---------DEAR3(2)    <------MYB46(1) --ARR14(2)                      ----------->HVH21                 <---------MYB46(3)    --------->MYB52(2) ==========HOX2a_HOX2a          <-----------HVH21                --------->ZAT18         <---------DEAR3(2) ==========HOX2a_HOX2a        --------->LBD16                  <---------DEAR3(1)       <---------AtMYB61 ----->LBD16                 --------->LBD16       <---------DAG2<---------ABI4(1)     <---------MYB52(1) =HOX2a_HOX2a                <---------LBD16       <----------DOF2<---------DEAR3(1) <---------ANAC58 ->ARR14(2)                 <---------LBD16--------->GLK1(2) <------ZmHOX2a(1)       <---------ANAC58 =HOX2a_HOX2a          <----------DOF2   <------NtERF2   <<<<<<<<<MYB98    --------->ARR11(3)<------MYB83   ggagaaggaggcggagtcacattttctttacccgggtaacggcagagtctgggctttttgttaggagggcggtgagagatgttgttagcgttggttgggt  18837500                                                    <-----------TGA1                                                  <------NtERF2                                      <---------HSFB2a(2)                                    <------ZmHOX2a(2)                                   --------->ARR11(3)                                   <---------ARR14(2)                              =============HOX2a_HOX2a                              ==============HOX2a_HOX2a                          <------ZmHOX2a(1)     <---------DEAR3(1)                             ------ XXXXXXXXXXXXXXXMIR162A/B =================HOX2a_HOX2a                                        ------- ---ANAC58                ==================HOX2a_HOX2a           --------->ALFIN1     --------->DEAR3(1) ---ANAC58        <---------ZAT2   --------->ARR14(2)   <---------At4g35610          --------->LBD16 ---ANAC46        <---------At4g35610 --------->HSFB2a(2)      <---------DEAR3(1)  --------->DEAR3(2) ->MYB55(2)       --------->At4g35610------>ZmHOX2a(2)  --------->At4g35610       --------->MYB52(1) --MYB46(3)    ---------->DOF2<------ZmHOX2a(1)<------NtERF2----------->HVH21    --------->CCA1(2)   gaagaggttttcgaatcgaaagctgtgaggaaggagggatctggaagtcgtcgtcgtcatcttcgacggtgttcgacatttagataccggcgaggcaaaa  18837600                      <---------ANAC46                      <---------ANAC58                --------->MYB52(2)           --------->LBD16          <---------ANAC58      ----------->GT1      <---------HSFC1(2)       <---------ZAT6      --------->HSFC1(2)<---------ZAT6      ---------->DOF2      --------->At4g35610      ----------->GT1                      --------->HSFC1(2)      --------->ZAT2  <---------ANAC58 <----------ID1               <---------HSFC1(2)      <---------HSFB2a(1)    <---------ANAC55(1)                --------->DEAR3(1)  *TSS--------->HSFB2a(1)    <---------ANAC46              --------->MYB52(1) --->DAG2 <---------ANAC46   <---------ANAC55(2)      ---------->DOF2                  <------ZmHOX2a(1) --->DOF2 <---------ANAC58   --------->ANAC55(2)  ---------->DOF2------>NtERF2  ---------->DOF2   gtgatagaagctccgtgttcgtttgagtgttaagtgttaaaacgacgaaagcgaaagaaagaaacgacgacgtttcggtttcaaaagtaggataagtcgc  18837700                                              <---------LBD16                                         <---------AHL20(2)                                         --------->AHL20(2)                                    <-----                                         --------->AHL20(1)                                    ------                                        --------->AHL20(2)                                     ------                              <---------AHL20(2) <------NtERF2                                 <-----                             --------->AHL20(1) --------->LBD16       --------->YAB1          -------                             --------->AHL20(2)<----------ID1<-----------GT1                  <------              <---------AHL20(2)        <---------AHL20(2)  ----------->HVH21           ----------->GT1     --------->ATHB12        <---------AHL20(1)<---------ANAC46      <---------YAB1  ---------->DOF2    <---------YAB1           <---------AHL20(2)<---------RAP2.6(2)  --------->AHL20(2) ----------->GT1  <-----------GT1           --------->AHL20(2)--------->RAP2.6(3)   <---------AHL20(2)--------->DAG2   atttttatcatttgttttaaatggagcaaaattaatttttaaaaaaattgcggcaaaaacttgtgaccattttaataaacaagagggaaaaggaaaataa  18837800        <------ZmHOX2a(1)                               <---------ANAC58 ----AHL20(2)                               <---------AHL20(2)       <-----------GT1 --->AHL20(1)                               --------->AHL20(2)   <---------AHL20(2) --->AHL20(2)                            <---------ARR11(3)      --------->AHL20(2) ----AHL20(1)                      <-----------GT1      <---------ANAC58                     <------- -->AHL20(2)            <-----------HVH21<---------AHL20(1)    <---------YAB1    --------->YAB1 ---AHL20(2)           ----------->GT1   --------->AHL20(1) <---------YAB1     <-----------GT1    <--   attgtgaagaggataagagcaaaaatggtcacaagttttacaatatttttttaaaatttcttactattaatatactagttttttcatcaccaatactcga  18837900                                        --------------->AtSPL8                                        <---------------AtSPL8                                      <---------AHL20(2)                                     <---------AHL20(2)                                      --------              <---------YAB1      --------->AHL20(2)                                        ---------            --------->ATHB51      --------->ATHB51                                       <---------ANAC58            <---------ICU4       --------->ICU4                                      <---------ANAC58            --------->AHL20(2)   <---------YAB1                                      <---------ANAC58           --------->ICU4      --------->YAB1                                  <---------AHL20(2)         --------->YAB1        <---------ICU4                           <---------MYB52(1)<----------DOF2        --------->AHL20(2)    <---------ATHB12                         <----------DOF2   <---------ANAC58 --HSFB2a(2)<---------AHL20(2)--------->ICU4                        ---------->ID1 --------->ARR11(3) ---------HVH21           --------->AHL20(2)                       <-----------GT1 <---------AHL20(2)   agtcagaccattaattatttttcgaaaaaaaaatcattatttattgtacattttttatgtgttgatttttttcctttagttttaatttcttgctttaaat  18838000                                ----------->GT1                                            <---------ZAT6                        <-----------RAV1(1)                                                ----------                      <---------ICU4                                                --------------->AGL15                   --------->YAB1                                                   <---------------AGL15                  <---------AHL20(2)                                               ----------------->AGL1    <---------TOE2(3) --------->YAB1                         ----------->GT1--------->AHL20(2) ->AHL20(2)       --------->AHL20(2)                  --------->ALFIN1      --------->ATHB51 >AHL20(2)       --------->AHL20(2)                <---------TOE2(3)       <---------MYB52(1)   tagacaaaggtttttcaaaattaataatgtgggattgtgaaatactaaaattttaggtgggagaagaaaattggtccattatttagcccaatagagtaaa  18838100  Previous    Next  AGI:  At2g45700.1    Description:  sterile alpha motif (SAM) domain-containing protein. similar to SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) [Arabidopsis thaliana] (TAIR:AT3G26680.2); similar to SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) [Arabidopsis thaliana] (TAIR:AT3G26680.1); similar to SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) [Arabidopsis thaliana] (TAIR:AT3G26680.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO43912.1); contains InterPro domain Sterile alpha motif SAM (InterPro:IPR001660); contains InterPro domain DNA repair metallo-beta-lactamase (InterPro:IPR011084); contains InterPro domain Sterile alpha motif-type (InterPro:IPR013761); contains InterPro domain Range:  from: 18834074    to: 18837602    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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