Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  =============HOX2a_HOX2a                ------>ZmHOX2a(2)               <------ZmHOX2a(2)               ==============HOX2a_HOX2a              --------->ARR14(2)              <---------ARR14(2)             <------ZmHOX2a(1)                                  --------->HSFC1(2)  <---------ANAC58                                              <---------HSFC1(2)  <---------ANAC58       ----------->GT1                 <---------ANAC46 <---------TOE1(2)      <---------------AtSPL8           <---------ANAC58  <---------At4g35610 <---------TOE2(3)    <------ZmHOX2a(1)    <-----------GT1      --------->At4g35610 -->TEIL ---------->DOF2--------------->AtSPL8           <---------ANAC58  --------->At4g35610  -----   tcttacgttggcaaaggatccaaaggattgtacatactctctatttctccaaacccattgcttataagcttccattgagcttcagatagagagaaacaaa  18832700                                                                                                    <                                                           --------->WOX13(1)                      <-                                                   --------->TOE2(3)                              ---                                  ----------->RAV1(1)    <---------ATHB12                         <--                                 <----------ID1    --------->TOE1(3)               ------>ZmHOX2a(1)<    <----------DOF2   --------->ARR11(3)          ----------->GT1        <----------DOF2       <----- ---->MYB52(1)    --------->At4g35610             --------->ANAC46    <-----------GT1 <--------P  <--   actgaactttgctatttctcagaagaaattgggaaacaacaaaattccattcacgttaaatcaatctctgattttctttctcttcctggttgcaattttg  18832800                                                                            --------->ANAC55(2)                                                                            <---------ANAC55(2)         *TSS                                                               --------->ANAC58      ----------->GT1                                                 <---------MYB52(1)   --------->At4g35610                                               <---------At4g35610  <---------MYB46(3)                                                 <-------GAMYB  <---------DEAR3(1)                                                <---------MYB46(3) -----------HVH21                                                   --------->MYB52(2)              - --------SPL7                                                      --------->SPL7                   < ------>ATERF1(2)                                                <---------SPL7                ------ -------ATERF1(2)                 <---------------AGL15       <---------ARR11(3)    <---------ARR14(2) ---------MYB52(1)    <------NtERF2        ----------->HVH21  --------->ARR11(3)    --------->ARR14(2) ------GT1   --------->RVE1(1) <-----------GT1        <------ZmHOX2a(1)     --------->ANAC58   ------ -------DREB2C(2)--------->ANAC46 --------------->AGL15  ------------>CBF  <-------TEIL ------>ZmHOX2a(1)   ccggtcgctggaaaaatatcaggcaccatctattttctattttcagtgacaaactaggaatcaatatcgtccgttgatacgttacagttcctgtaatcaa  18832900                           --------->TOE1(2)                           --------->TOE2(2)                          --------->YAB1                         >>>>>>>>>MYB98                        <-----------GT1                   --------->AHL20(2)             --------->ANAC55(2)                 ---------->DOF2             --------->ANAC58                 --------->LBD16             ----------->GT1                 --------->HSFB2a(2)             --------->ANAC58                <---------HSFB2a(2)                           --------->AHL20(2) -------->ARR14(2) <---------AHL20(2)       <---------LBD16                                <---------AHL20(2) ---------ARR14(2)--------->ICU4        <-------TEIL                         <---------AHL20(2) ------>AtMYB77<---------AHL20(2)   --------->ICU4             <---------CCA1(2)      ------------>CBF --->MYB52(1)<---------ANAC55(2)    <---------YAB1--------->DAG2          <---------AHL20(1)<--------   cggttacgatgcgataagtaattttttaacataagatgatgattcatcgggaaaagtaataggccttatcttgtagtatatttttaggcccaattaaata  18833000                                                            ------->TEIL                                                         --------->ANAC58                                                         --------->MYB46(3)                                                         <---------MYB52(2)                                                 --------->AtMYB61                                                 <---------ALFIN1                          <---------ANAC46      --------->ANAC46                                -----                          <---------ANAC58    --------->ANAC46                                -------               --------->TOE2(3)     <---------ZAT18     --------->ANAC58              <------MYB83               --------->TOE1(3)     --------->ZAT14 --------->ANAC46  --------->ZAT2  <------MYB46(1) ----------->RAV1(1)      <---------ANAC58 --------->MYB46(3)      *TSS--------->At4g35610   ------>ZmHOX2a(1) =========================RAV   <---------At5g28300  --------->ANAC58  <---------ZAT2 --------->MYB59 -AHL20(2)    ----------->RAV1(2)    <---------ZAT14 --------->ANAC58 --------->ARR11(3) --------->ARR14(2)   gcccaacatgtcttcaacctgaacgatgtcgttttacagtgaacaacaacaccacacgaacgaaccctagaagagctgggttttgaatttggttcctcct  18833100                                                --------->ANAC55(2)                                                <---------ANAC55(2)                                           --------->YAB1                                           <---------ICU4                                           -         ------->GAMYB                 <---------YAB1                                             <--        --------->MYB46(3)        <---------------AtSPL3   --------->YAB1               <----------DOF2   --------->TOE2(3)              <---------------AtSPL8   --------->ANAC55(2)         --------------  --------->YAB1                 <---------ANAC46         ---------->ID1             <---------ANAC46 ->ZmHOX2a(1)        <-----------GT1<---------SPL7     <----------DOF2               <---------ANAC58 ---->RAV1(2)       --------->AHL20(2)--------->SPL7  <---------ICU4                 <---------ANAC58   gcaaacatcaacgacgatgcaattaactcttgaattcgggtacgattatcacttaatcttttcgtaatcggagttttgttattcgtagcgtttttagttt  18833200                                                    <---------WOX13(1)       ---------->DOF2                            --------->ATHB12                          <-------MYC3 <---------MYB59                     <---------TOE2(3)--------->ATHB12                      ------->MYC3 -------->ANAC46       <---------ANAC58          ------>ZmHOX2a(1)              --------->ARR11(3) ---------GT1 <---------YAB1    <----------DOF2  <---------YAB1            --------->AHL20(2)-------- --------->TaNAC69(2)  <---------ANAC58      <-----------GT1      --------->ICU4<---------ARR11(3)   ttacctcactaaagttctgattttgacttggtgtcttttgagattattttcctgattgattgtatgtaatactgaaatttaagaacttgaaccatgtgtg  18833300                                                           <-------GAMYB                   <---------WOX13(1)                      <---------ANAC46                 <------------ATHB5                       <------MYB83                 --------->ATHB12                         <------MYB46(1)                 <--------ATHB1                          <---------MYB46(3)                 <---------ICU4                         <--------P                 -------->ATHB1                  --------->REM1(2)                <---------ATHB51                --------->ALFIN1                                    <                --------->ICU4                <---------ANAC46                                -------                <---------ATHB12              <---------bZIP60(2)--------->At4g35610         --------                <---------YAB1           --------->ANAC55(2)     <---------At4g35610      --------->YAB1      <---------MYB46(3)   ----------->GT1 ----------->HVH21  ----------->ARR10          <-------TEIL ->ALFIN1    ------------>ATHB5     ----------->HVH21   --------->ALFIN1           ---------->DOF2 <-   tgttttagttgttgttcaatgattgagaagagtgaaacttgacatgtgatgtgtaggggtgggttagagctgctctgtgattctgaaaagattcataaag  18833400                             <---------At4g35610                    --------->ZAT2     --------->ATHB12 ----------->HVH21   <---------------------WRI1--------->YAB1                        --------->DAG2  --------->TOE2(3) <---------ZAT2                                ---------->DOF2 ---------TOE2(3)   <---------At4g35610                        --------->YAB1                     <-- -->DAG2        <---------ATHB12                              <------ZmHOX2a(2)                   <-- -->DOF2      --------->MYB52(1)  <---------REM1(1)<---------TOE2(2)    --------->ANAC58  <---------ICU4 --------DOF5.7(2)  --------->At4g35610            <---------TOE1(2)    --------->ANAC58 <---------ATHB12   taaacgttgatttgcccaatggagctgactctgatgatgtaagcttgagttcttatgtttttggatcataaagctcgcaatttttctctcactcattcca  18833500                                                       <-----------ARR10                      <------                                                <---------ANAC58                              -------                                                <---------ANAC58                              -------          ------>ZmHOX2a(1)                    <-------TEIL    ---------->DOF2         ---------->DOF2          --------->LBD16                      --------------->AtSPL3                <---------YAB1         <---------LBD16                       --------------->AtSPL8             <-------TEIL<------   <---------YAB1                    <----------DOF2   --------->ARR14(2)     --------->ARR11(3) --------DOF2                       <---------ANAC58   <---------ARR14(2)     <---------ARR11(3) -------DAG2                        <---------ANAC58   --------->GLK1(2) --------->TOE1(2)  ---------   cttttctgattcctggattagtttaccatgaagcatttgctttcatgggttcgtacaaatctgatcaaagagagacctgagatgttcatgaaaggagata  18833600  Previous    Next  AGI:  At2g45690.1    Description:  SSE1 (SHRUNKEN SEED 1). similar to putative shrunken seed protein [Brassica napus] (GB:AAZ20121.1); contains InterPro domain Peroxisome membrane protein, Pex16 (InterPro:IPR013919) Range:  from: 18830245    to: 18832809    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g45695.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61113.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82245.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24464.1); contains InterPro domain Ubiquitin-related modifier 1 (InterPro:IPR017188); contains InterPro domain Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp (InterPro:IPR016155); contains InterPro domain Ubiquitin related modifier 1 (InterPro:IPR015221) Range:  from: 18833067    to: 18833953    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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