Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->GLK1(1)                                    --------->At4g35610                                 <---------ZAT2                  <------ZmHOX2a(2)   ----------->RAV1(1)           --------->At4g35610            <---------ARR11(3) -------->AtLEC2                 <---------At4g35610            --------->ARR11(3) -------->ANAC46                 --------->ZAT2             ---------->DOF2 -->WOX13(1)                     ----------->RAV1(2)      --------->AHL20(2)                  ------- --HVH21      --------->YAB1 <-----------HVH21            <---------AHL20(2)        <---------AHL20(2)   ccctgcaacaaaacaaacatatttgacgaactatcagctgatgaattccacaactacgaattaaaagatcgaactgattcaactcttaaattttttcaaa  18832400                                                               <---------AHL20(1)                                                               --------->AHL20(1)                            <---------HSFC1(2)                 <---------ARR11(3)                            --------->HSFC1(2)         --------->ANAC46                    --------->AHL20(2)                 --------->ANAC58                   <---------ATHB12                    --------->ANAC58   --------->ANAC58        --------->TOE2(3)---------->DOF2               --------->AtLEC2   --------->ANAC58   <---------YAB1  --------->AHL20(2)                ---------->DOF2    ---------->DOF2 --->DOF2     --------->ANAC46             --------->ANAC46    --------->ARR11(3)   gggttttcattcttaaacccaataaataaaagcttcgattttaaaacacaacccttcaagcaaaaaatattcaaacaagcagacgatgaaaaacttagaa  18832500                                                                                  ----------->GT1                                                                    <---------AHL20(1)                                                                    <---------AHL20(2)                                                                    --------->AHL20(2)                                                                    --------->AHL20(1)   <---------AHL20(2)                --------->ANAC58                                   --------->AHL20(2)   --------->AHL20(2)      --------->MYB52(1)                               --------->YAB1     <---------TOE2(3)    <---------MYB52(2)                      --------->YAB1         <---------AHL20(2)   --------->YAB1  --------->ZAT6--------->ANAC58          --------->GLK1(2)  ----------->GT1<------ZmHOX2a(1)   -----   attgacactaacgacgagacgaaaacaaacccaaatcgacagagaatcagaacataatcaaactggaaaataaattaaggagaagagtaataaaaatgaa  18832600                ------>ZmHOX2a(2)                =============HOX2a_HOX2a               ==============HOX2a_HOX2a               <------ZmHOX2a(2)              <---------ARR14(2)              --------->ARR14(2)             <------ZmHOX2a(1)                                  <---------HSFC1(2)  <---------ANAC58                                              --------->At4g35610  <---------ANAC58       ----------->GT1                 <---------ANAC58 <---------TOE2(3)      <---------------AtSPL8           <---------ANAC58  --------->At4g35610 <---------TOE1(2)    <------ZmHOX2a(1)    <-----------GT1      --------->HSFC1(2) -->TEIL ---------->DOF2--------------->AtSPL8           <---------ANAC46  <---------At4g35610  -----   tcttacgttggcaaaggatccaaaggattgtacatactctctatttctccaaacccattgcttataagcttccattgagcttcagatagagagaaacaaa  18832700                                                                                                    <                                                           --------->WOX13(1)                      <-                                                   --------->TOE2(3)                              <--                                  ----------->RAV1(1)    <---------ATHB12                         <--                                 <----------ID1    --------->TOE1(3)               ------>ZmHOX2a(1)<    <----------DOF2   --------->ARR11(3)          --------->ANAC46       <----------DOF2       <----- ---->MYB52(1)    --------->At4g35610             ----------->GT1     <-----------GT1 <--------P  ---   actgaactttgctatttctcagaagaaattgggaaacaacaaaattccattcacgttaaatcaatctctgattttctttctcttcctggttgcaattttg  18832800                                                                            --------->ANAC58                                                                            --------->ANAC58         *TSS                                                               --------->ANAC55(2)      ----------->GT1                                                 <---------MYB52(1)   --------->At4g35610                                               <-------GAMYB  <---------MYB46(3)                                                 <---------At4g35610  <---------DEAR3(1)                                                <---------MYB46(3) ---------MYB52(1)                                                  --------->MYB52(2)              - --------SPL7                                                      --------->SPL7                   < -------DREB2C(2)                                                <---------SPL7                ------ -------ATERF1(2)                 --------------->AGL15       --------->ARR11(3)    --------->ARR14(2) -----------HVH21     <------NtERF2        ----------->HVH21  <---------ARR11(3)    <---------ARR14(2) ------GT1   --------->RVE1(1) <-----------GT1        <------ZmHOX2a(1)     <---------ANAC55(2)------ ------>ATERF1(2)--------->ANAC46 <---------------AGL15  ------------>CBF  <-------TEIL ------>ZmHOX2a(1)   ccggtcgctggaaaaatatcaggcaccatctattttctattttcagtgacaaactaggaatcaatatcgtccgttgatacgttacagttcctgtaatcaa  18832900                           --------->TOE1(2)                           --------->TOE2(2)                          --------->YAB1                         >>>>>>>>>MYB98                        <-----------GT1                   --------->AHL20(2)             --------->ANAC55(2)                 ---------->DOF2             --------->ANAC58                 --------->LBD16             <---------ANAC55(2)             <---------HSFB2a(2)             ----------->GT1                 --------->HSFB2a(2)                           --------->AHL20(2) -------->ARR14(2) <---------AHL20(2)       <---------LBD16                                <---------AHL20(2) ---------ARR14(2)--------->ICU4        <-------TEIL                         <---------AHL20(2) ------>AtMYB77<---------AHL20(2)   --------->ICU4             <---------CCA1(2)      ------------>CBF --->MYB52(1)--------->ANAC58       <---------YAB1--------->DAG2          <---------AHL20(1)<--------   cggttacgatgcgataagtaattttttaacataagatgatgattcatcgggaaaagtaataggccttatcttgtagtatatttttaggcccaattaaata  18833000                                                            ------->TEIL                                                         --------->MYB46(3)                                                         --------->ANAC58                                                         --------->ANAC58                                                 <---------ALFIN1                                                 --------->AtMYB61                          <---------ANAC58      --------->ANAC46                                -----                          <---------ANAC58    --------->ANAC46                                -------               --------->TOE1(3)     <---------ZAT18     <---------MYB52(2)            <------MYB46(1)               --------->TOE2(3)     <---------ZAT14 --------->ANAC58  <---------ZAT2  <------MYB83 ----------->RAV1(1)      <---------ANAC46 --------->MYB46(3)      *TSS--------->At4g35610   ------>ZmHOX2a(1) =========================RAV   <---------At5g28300  --------->ANAC46  --------->ZAT2 --------->MYB59 -AHL20(2)    ----------->RAV1(2)    --------->ZAT14 --------->ANAC58 --------->ARR11(3) --------->ARR14(2)   gcccaacatgtcttcaacctgaacgatgtcgttttacagtgaacaacaacaccacacgaacgaaccctagaagagctgggttttgaatttggttcctcct  18833100                                                <---------ANAC55(2)                                                --------->ANAC55(2)                                           <---------ICU4                                           --------->YAB1                                           -         ------->GAMYB                 <---------YAB1                                             <--        --------->MYB46(3)        <---------------AtSPL3   --------->ANAC55(2)          <----------DOF2   --------->TOE2(3)              <---------------AtSPL8   --------->YAB1              --------------  --------->YAB1                 <---------ANAC46         ---------->ID1             <---------ANAC46 ->ZmHOX2a(1)        <-----------GT1<---------SPL7     <----------DOF2               <---------ANAC58 ---->RAV1(2)       --------->AHL20(2)--------->SPL7  <---------ICU4                 <---------ANAC58   gcaaacatcaacgacgatgcaattaactcttgaattcgggtacgattatcacttaatcttttcgtaatcggagttttgttattcgtagcgtttttagttt  18833200                                                    <---------WOX13(1)       ---------->DOF2                            --------->ATHB12                          <-------MYC3 <---------MYB59                     <---------TOE2(3)--------->ATHB12                      ------->MYC3 -------->ANAC46       <---------ANAC58          <---------YAB1                 --------->ARR11(3) ---------GT1 <---------YAB1    <----------DOF2  ------>ZmHOX2a(1)         --------->AHL20(2)-------- --------->TaNAC69(2)  <---------ANAC58      <-----------GT1      --------->ICU4<---------ARR11(3)   ttacctcactaaagttctgattttgacttggtgtcttttgagattattttcctgattgattgtatgtaatactgaaatttaagaacttgaaccatgtgtg  18833300  Previous    Next  AGI:  At2g45690.1    Description:  SSE1 (SHRUNKEN SEED 1). similar to putative shrunken seed protein [Brassica napus] (GB:AAZ20121.1); contains InterPro domain Peroxisome membrane protein, Pex16 (InterPro:IPR013919) Range:  from: 18830245    to: 18832809    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g45695.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61113.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82245.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24464.1); contains InterPro domain Ubiquitin-related modifier 1 (InterPro:IPR017188); contains InterPro domain Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp (InterPro:IPR016155); contains InterPro domain Ubiquitin related modifier 1 (InterPro:IPR015221) Range:  from: 18833067    to: 18833953    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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