Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     --------->ANAC58                                                                                 <---------ANAC46                                                                              ----------->HVH21                                                                              --------->ALFIN1                                                                             -------->ABF1                                                                             <-------PIF5                                                                             <-------MYC4                                                                             ------->MYC2                                                                             ------->PIF5                                                                             <-------MYC2                                                                             <-------MYC3              --------->ARR14(2)                                             ------->MYC4              <---------ARR11(1)                                             ------->MYC3         --------->MYB52(1)                                                 --------->ANAC55(2)        <---------ALFIN1                 ------>MYB83                       --------->ANAC46        ------->GAMYB              ----------->HVH21                        --------->O2        --------->AtMYB61      <---------GLK1(1)                            --------->TGA1a <--------       <---------MYB52(2)      --------->GLK1(1)                            <---------TGA1a ---------       <---------MYB55(2)     <---------ARR14(2)                            <---------O2    <--------       --------->MYB46(3)     --------->ARR14(2)                           ------------>OsbHLH66-----     ------->GAMYB        <------NtERF2  ------>MYB46(1)                <---------ALFIN1   <---------CCA1(2)    <---------MYB111(1)  <---------SPL7<---------MYB46(2)              --------->At4g35610 <---------ARR14(1)    <---------MYB111(2)  ------>NtERF2 <---------MYB59 <---------WOX13(1) <---------ALFIN1--------->LBD16    <---------MYB55(2)   <-----------HVH21          <---------AHL20(2)--------->DEAR3(1) <---------ANAC55(2)    --------->MYB46(3)  --------->DEAR3(1) --------->ZAT6             --------->RAP2.6(2)--------->ANAC55(2) >CDC5-------->P   xxxxxxxxxxxxxxxx>smallRNA(i)  ----------->GT1  ------>ZmHOX2a(1)--------->ANAC58   tctccaacaaccaccgaatcgtttcgccgtcggatttgtgacctaactctcgagttaattgaaaaatcctagccgcacacgtggcaggcatccgtatcct  18828600                              <----------DOF2                      ----------->HVH21                                                             <                      xxxxxxxxxxxxxxxx>smallRNA(i)                   <---------DEAR3(1)           <--                  <---------ANAC46                       --------->PCF5     --------->At4g35610  ---- -ARR11(1)        <---------ANAC58                     <---------MYB46(3)   <---------At4g35610 ----- >ARR14(2)        <---------ANAC58                    <---------AtMYB61 --------->ALFIN1       ------ -ARR14(2)     --------->TOE2(3)         <---------ARR11(3)  <-----------HVH21     --------->ARR11(3) ->ZmHOX2a(1)  --------->TOE2(2)         --------->ARR11(3) ------>ZmHOX2a(1)  ---------->DOF2-------   tctccctcttccttcaaccttcgtgtgacggtctttagtcgaagctctcttcaatggtggtcctgtcgaagacggtggagctaaagacattgaaaacgac  18828700           <---------ALFIN1          --------->ATERF1(1)          <------NtERF2         ------>NtERF2         <---------ATERF1(1)         <---------RAP2.3(1)        --------->ARR14(2)        <---------ARR14(2)       --------->ZAT2      <---------ATERF1(1)     --------->DEAR3(1)                                                              <---------YAB1    <---------LBD16                                                              <---------MYB52(1)  <---------ALFIN1                                  --------->ARR11(3)          <-------GAMYB       - -----------HVH21                               ---------->DOF2              ------>NtERF2        --- ----NtERF2--------->DEAR3(1)              <---------ANAC46                 --------->bZIP60(1)  <--- -->NtERF2--------->DEAR4(2)               <---------ANAC58              ----------->TGA1<---------MYB46(3) ---->ANAC46                               <---------ANAC58         --------->HSFC1(2)  <---------YAB1 --->RAP2.6(3)                           <---------AHL20(2) <---------HSFC1(2)<------NtERF2     <---- -->MYB52(1)------>NtERF2       <-----------RAV1(1) <---------ARR11(3)   ----------->HVH21<-------GAMYB   ggcatcaccggctccgccttgggctcgagactcactgtgggatttacttggaaaggtcttgaagtttcgacgtttctgacgccgttgatgatggttagat  18828800                                                                                            ---------                                                                                            ---------                       <---------ANAC58                                                   <---------At4g35610                       <---------ANAC46                                            <---------DEAR3(1)                       <---------ANAC58                    <---------AHL20(2)     --------->SPL7                   <----------DOF2                         --------->AHL20(2)     <---------ORA47(1)            ----------------------->TaNAC69(2)        <------NtERF2              --------->MYB52(1) -------->MYB46(3)<---------ICU4                     ------>NtERF2              <---------SPL7 ------>MYB52(1)  ------>ZmHOX2a(2)                 --------->ETT(2)         --------->MYB52(1)<----- ------WRKY12   --------->ARR11(3)                 ---------->ID1  <---------At4g35610    --------->At4g35610 --ZmHOX2a(2)   <---------ARR11(3)        --------->At4g35610      --------->At4g35610--------->ALFIN1   caacggctcttagagtttgatctttgcctgcaacttcttcaagcttctgaattgtcgccattaaaatatagctgagagaaaacggacggtggagatgacg  18828900                                                                                           --------->AHL20(2)                                                                                         <-----------TBP                                              <-----------HVH21                       <---------ARR11(3)                                           ------->GAMYB                             <------ZmHOX2a(1)                                         <---------At5g28300                      <-----------RAV1(2)                                        --------->MYB52(1)                      <-----------HVH21                 <---------ARR14(2)     <-----------GT1        *TSS             <-----------TGA1     <---------MYB46(3)           ----------->GT1   --------->ANAC46           --------->bZIP60(2)     ----------->GT1            --------->GLK1(2)   --------->ANAC58           --------->O2<--------- -->HVH21        --------->ARR14(2)  <----------DOF2--------->ANAC58           --------->TGA1a      - -->TGA1       ----------->GT1 <---------GLK1(2)  <---------ALFIN1        ----------->HVH21<---------AHL20(2) -----ID1 ---------->DOF2  ---------->DOF2 ==============================================MYC_MYB  <--   acgagagttgttaaaagcggatacaatgggaaagaatcgttttaacggcgttacacgtccaaggagattactaaatgtgactcgtcaggatatatatata  18829000                                          --------->LBD16                                          ----------->GT1                                         <---------ANAC58                                         <---------ANAC46        --------->ALFIN1    <------ZmHOX2a(1)                    <---------ANAC58      <---------ANAC46 ===================== --TBP                                  <---------LBD16     ------>ZmHOX2a(1)   ---------->DOF2   <-- -------->At4g35610             <----------DOF2        ------->GAMYB         ======================== ----ZmHOX2a(1)                 <---------DAG2      --------->MYB52(1)       <----------DOF2<--------   ggagcaggaaaacaagtgagaatagtattcaacgctttttgatgcgggaaaaatcaacggtcctgatgtgttcgatgagctttaaagaaccattccgatt  18829100    ------->MYC3    <-------MYC2    ------->PIF5    <-------PIF5    ------->MYC2    <-------MYC3   <---------TGA1a   <---------ANAC55(2)   --------->TGA1a   <---------O2   --------->ANAC46   =========================bZIP_DOF                     ------------------>SPL14   --------->O2                                <---------YAB1                            <-----------GT1 <---------ALFIN1<----------DOF2             --------->YAB1                            <-----------GT1 ============bZIP_DOF                        <--------HAHB4                       <----------DOF2 ---------GT1 <-----------GT1               <---------YAB1                    --------->ZAT14 ============bZIP_DOF                  --------->ZAT6<---------PCF2           <---------ZAT14   <---- -YAB1       <---------ATHB12          --------->YAB1<---------PCF5  <---------------AtSPL8 <--------   gtaccacgtgaacaaatcactttccattgctctatcttctatcagtattattatgggaccatctgtacaatggggtccagtaaactttatttctcttttc  18829200                                            --------->TOE2(3)                             <-----------GT1--------->TOE1(3)                             <---------YAB1 --------->TOE1(2)            <---------GLK1(2)                      ----------->GT1       --------->TOE2(2)  ----------------->AGL2  -------------- -------GT1  <---------AHL20(2)          <-----------GT1       ----------------->AGL3  <------------- --DOF2    <----------DOF2  <---------AHL20(1)    ---------->DOF2     --------->YAB1  <--------P   acaaaatgtttttcttttattgtttagtaatatacttgttttttaacctaagaaaagcttcaaaatccaaaatcagaaactcattctggttagtacttac  18829300                                                                                                    <                                                                                                    <                                                                                                  <--                                                                                                 ----                                                                                               ------                                                                                      <---------ARR11(3)                                                                                      <---------GLK1(2)                                                                              <--------P       <-----                                                                            <---------MYB46(3) ------        --------->ZAT18                                                     --------->ATHB12   <-----        <---------ZAT14          --------------->AtSPL8                    <---------TOE2(3)   ------        --------->ZAT14         <----------DOF2                            <---------YAB1     <------        <---------ZAT18      ------>MYB46(1)                        <---------DAG2    --------->ARR11(3)    <---------------AtSPL8   ------>MYB83                           <----------DOF2 ----------->ARR10 ->AtSPL8                  <---------MYB59                       <-----------GT1<------MYB46(1)<----- --AtSPL8           --------->AHL20(2)                          <-----------GT1 <------MYB83  <------   tagttactagtacactcccaaatgaaatacctagctttgtacaaaaatttccatcgctgatcaaatttaacttttctatggttggaaagattttcaataa  18829400                                                                                                    -                                                                                                  <--       <---------MYB52(1)                                                                         <--     <---------MYB46(3)                                                                          ---- --------->ATHB12                                                                                ---- ---------YAB1                                                                                  ----- ---------AHL20(2)                   <---------TOE2(3)                                         <----- -------ICU4                      <---------AHL20(2)                                           <----- ----->ICU4                      --------->AHL20(2)                                            <----- --->AHL20(2)                <---------AHL20(2)                                               <------ ----AHL20(1)                --------->AHL20(2)                                               <------ --->YAB1            <---------ARR11(3)                                              <-----------HVH21 ----ICU4--------->MYB59<-----------GT1                             <------MYB46(1) <------MYB46(1) - --->ATHB51          --------->ARR11(3)    --------->DAG2           <------MYB83    <------MYB83<---- ---ATHB51       ---------->DOF2 <---------AHL20(2)               <--------P    <---------REM1(1)---- ---ATHB1--------->MYB46(2)--------->TOE2(3)                      --------->ALFIN1 --------->MYB59--- ---ATHB12----------->GT1  <----------DOF2---------->DOF2        <-------GAMYB <---------TOE2(3)-----   tttttattggttaggcaaaaaaagatttactttaattttatggaaaaagctgtaagcccatacttggggttggaccccattaatgtaggtcacaaggctg  18829500  Previous    Next  AGI:  At2g45680.1    Description:  TCP family transcription factor, putative. similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G51910.1); similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G51910.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO24459.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333) Range:  from: 18827316    to: 18828963    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g45685.1    Description:  other RNA Range:  from: 18827765    to: 18829258    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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