Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       <---------DEAR3(2)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   --------->ANAC58                   ------>MYB46(1) --------->ANAC58                   ------>MYB83    --------->ANAC46                --------->At4g35610                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          ----------->RAV1(1)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------ATERF1(1)                   ==========================MYC_MYB        <---------DEAR3(1)                   -------->P      <---------O2  <------NtERF2   <------NtERF2                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->ATERF1(1)                 <---------MYB111(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 <---------MYB59   --------->bZIP60(2)    --------->At4g35610                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    ====================RAV               -------->P          <---------TGA1a        ----------->RAV1(2)               ==============================MYC_MYB      <---------At4g35610              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        ------>NtERF2             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------At4g35610            <---------ANAC58       --------->TGA1a      <---------RAP2.6(2)                     <----           <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <------ZmHOX2a(1)          <-----------GT1          --------->O2<---------ZAT18   --------->ATERF1(1) --------->ANAC46     <---------ANAC46           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                --------->ANAC58     <---------ANAC58         ----------->HVH21--------->ZAT18<------NtERF2          --------->ANAC58 -------DOF2<---------ANAC58--------->YAB1<xxxxxxxxxxxxxxxxsmallRNA(i)       ---------->DOF2    <---- -GT1<---------ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)------>NtERF2  --------->AHL20(2)  <----   tttaatgtcgttttacttacctactacttctcatgacacgtcgtttcagtccgctattgccgctggcgcagcatcaaataaaagaacacgctaggatagc  18811000        <-------TEIL     ----------->GT1    --------------->AtSPL8                                                                         --    <---------------AtSPL8                                                                         --   --------->DAG2                                                                                  -- ---------->DOF2      --------->HSFB2a(2)                                                         --- -----ANAC58          <---------HSFB2a(2)                                                         --- -----ANAC46    <---------------AGL15                                                 <----------DOF2 -----ANAC58    --------------->AGL15                          --------->MYB52(2) <---------ZAT18----   ttgaaaagggtacaataactagttatagaagaacatgagccataacatttggaaacaaaatgagttagtttgaatttgaaacatcgcgctctatgtaaaa  18811100                                      ----------->GT1                                  ---------->DOF2                                                ----                            <--------ATHB1                                                     <-----                            --------->YAB1                                                   <-------                            --------->ATHB51                                          <--------------                            <--------HAHB4                                            ---------------                            -------->HAHB4                                           ----------------                            <---------ICU4                                           <---------------          ---------->DOF2  --------->ICU4                                            ----------------     ---------->DOF2       <---------ATHB51                                          ---------------- --------->GT1             <---------YAB1                                         <---------GLK1(1) ------->ANAC58            <---------ATHB12                          ----------->GT1 <--------------- ------->ANAC58            --------->AHL20(2)                        <---------MYB46(3)<------------- ------>DAG2            ------>ZmHOX2a(1)     ---------->DOF2    ----------->HVH21--------->GLK1(1) --------------------->ANAC81  <---------AHL20(2)       <---------YAB1<-------GAMYB  ---------------- ------>DOF2   ---------->DOF2 --------->AHL20(2)   <---------KAN4(2)<---------ZAT6  <---------------   aaagcaaaaaagaaaagaaaagagtcctaataattaaaaagagaaaataaaaggaattttcaatggtccgactgttacaagtagatttccatttttagga  18811200 ----->GLK1(2) -ZmHOX2a(1) --TOE2(3) -AGL15                                                                                            -- >AGL15                                                                                         <---- ->AG                                                     --------->AHL20(2)                <-------- --AGL2                                                   <---------AHL20(2)                <-------- ->AGL3                                               <---------RVE1(1)             <---------ARR11(3) ->AGL1                                              <---------ARR11(3)      ----------->RAV1(1)<---- --AG                                                --------->ARR11(3)     --------->MYB46(3)  <---- --AGL15                                        ----------->TGA1<---------AHL20(2)  --------->ARR11(3) ->AGL2 <---------TOE2(3)  --------->YAB1    --------->AHL20(1) --------->AHL20(2) --------->CCA1(1) --AGL3--------->YAB1     <---------YAB1    --------->AHL20(2) --------->AHL20(2)  --------->RVE1(1)<   atctagctataacgatgaagacagagttatcattttgttccatcaaatatatgacgatatttatatttaatttcttcaacaacaaatatctcatttgttg  18811300                                      ---------->DOF2                                   --------->AHL20(2)                               --------->AHL20(2)                               <---------AHL20(2)                               <---------AHL20(1)                               --------->AHL20(1)                            --------->ATHB51                            <--------HAHB4                            -------->HAHB4                 ======================RAV     <-----------HVH21      <--------ATHB1                 ------->TEIL    <----------DOF2         <---------ICU4                --------->ANAC46 <---------ALFIN1           --------->YAB1               ------->GAMYB ---->NtERF2               --------->AHL20(2)           --------->ANAC58 --MYB46(1)                --------->ICU4               --------->ANAC58 ---RAV1(1)                <---------ATHB51            --------------->AtSPL8 -MYB46(3)                 <---------YAB1       --------->ANAC55(2)    ----------->GT1 -----MYB46(3)             <---------ATHB12    <---------TOE2(3)   <-----------GT1  <------------CBF --MYB83                 --------->YAB1   <------ZmHOX2a(1)----------->RAV1(1)  --------->YAB1 ------NtERF2     <------ZmHOX2a(1)<---------AHL20(2) <-----------GT1----------->RAV1(2)---------->DOF2   gtgccactttcacatacttaggacgactaataattaattaaaaaggatttatgtaataacgcaccatattaacctgtaacaagaagaattgaaagtaata  18811400                 <---------ALFIN1     <---------DAG2               ----------->RAV1(1)    <----------DOF2       <---------AHL20(2)       --------->ANAC58       ----------->TBP          --------->ANAC58       --------->AHL20(2)       --------->ANAC46     ----------->TBP       <---------------AtSPL8     <---------------AGL15 <---------------AtSPL3     --------------->AGL15<---------ANAC58         <<<<<<<<<GATA-1                               ----    <-----------------AGL3<---------ANAC46        <-----------GT1     <-----------GT1         <------   <-----------TBP        <---------ANAC58<-----------GT1         --------->DAG2          >>>>>>>>>TBF1   --------->AHL20(2)   *TSS   --------->SPL7 <----------DOF2    ---------->DOF2       >>>>>>>>>TBF1   caagtttatatatatagcaacacatttatcgtgtacgatactttattccttttatctattcttgaaaaaaagttaccaattcttgagaagaagaagaaat  18811500                                                                              ----------->HVH21                                                                            =========================bZIP_DOF                                                     <---------ARR14(2)     <---------O2 ------------------------>ANAC81                    <------ZmHOX2a(1)       <---------ANAC55(2)   --- --------->GLK1(2)                         <---------At4g35610              --------->ANAC55(2)  <--- ----->YAB1        ---------->DOF2         --------->At4g35610              --------->TGA1a      ---- ---GLK1(1) <------ZmHOX2a(1)          --------->ALFIN1                     --------->O2  ---------->DOF2   cagaatcaagagaaggagagagaaagatgggaagagggagagtggagatgaagaggatagagaacaagattaatagacaagtgaccttctcaaaaagaag  18811600                                                                                              <------MYB83                                                                                  <---------ARR11(3)                                                                                --------->ANAC58   <-             ---------->DOF2                                                    --------->ANAC58   <-      --------->At4g35610                                                 --------->LBD16     <------MYB46(1)      <---------At4g35610                                                <---------ANAC58    --------   <---------MYB52(1)                                                    <---------ANAC58    -------- ------>MYB52(1)                   <----------DOF2                    --------->ANAC58       -------- ------ARR14(2)           <----------DOF2                             --------->ANAC58       -------- ----->ARR14(2)         --------->At4g35610------>NtERF2 --------->YAB1 <-----------------------TaNAC69(2)   aaacggtttgctgaagaaagcttatgagctttctgttctttgcgatgccgaagttgctctcatcatcttctcaagccgtggcaagctctacgagtttggt  18811700    <---------ANAC58    <------MYB46(1)    ----------->GT1    <---------ANAC46    <---------ANAC58    <------MYB83   --------->MYB59   <---------MYB46(3)                                     <-------TEIL  <---------ANAC46                                    <---------TOE2(3) ----------RAV1(1)                         --------------->AGL15 --------ZAT6                      <----------DOF2    <---------YAB1 ->MYB46(2)             <----------DOF2    <---------------AGL15                                    < ->MYB59     --------->ARR11(3)  ------>MYB83  <---------AHL20(2)   --------->DAG2               ---- ->MYB111(1) <---------ARR11(3)  ------>MYB46(1)<---------AHL20(1) ---------->DOF2             <----- ->MYB111(2)<---------CCA1(2) --------->MYB46(3)--------->AHL20(1)<---------ATHB12           --------   agtgttgggtatatatatctttgctcctttgaaccaacttttgtgctatatatattaagattcatccaataaagctatgttttttatatgaaaattgatt  18811800                               <---------TOE2(2)                               --------->SPL7                            <---------YAB1                               <---------TOE1(2)                        --------->TOE2(3)                             --------->TOE1(2)                        <---------YAB1                             --------->TOE2(2)                       --------->KAN4(2)                             <---------SPL7                       <-------GAMYB        <-------TEIL        --------->TOE1(1)                    ----------->GT1 ---------AHL20(2)          --------->TOE2(1)               ------>ZmHOX2a(2)                  ------ ----->YAB1                --------------->AtSPL8         --------->ARR11(3)          <---------ANAC46 ----WOX13(1)              <---------------AtSPL3         <---------ARR11(3)  <---------MYB46(3)  --- ->ATHB12              <-----------GT1          <------ZmHOX2a(2)<---------MYB46(3)   ----------->GT1   aataaatgggttcatttgctacttgttacatcgtacgattcaagagtcggatcatgttttgatcttgtggttattcttaatggttgtatcgtttatcctg  18811900  Previous    Next  AGI:  At2g45650.1    Description:  AGL6 (AGAMOUS LIKE-6); DNA binding / transcription factor. Identical to Agamous-like MADS-box protein AGL6 (AGL6) [Arabidopsis Thaliana] (GB:P29386); similar to AGL13 (AGAMOUS-LIKE 13), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G61120.1); similar to MADS-box protein AGL6-a [Brassica oleracea var. botrytis] (GB:CAD48306.1); contains InterPro domain Outer membrane chaperone Skp (OmpH); (InterPro:IPR005632); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 18811424    to: 18813596    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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