Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             --------->ALFIN1                        --------->DAG2                ------>ZmHOX2a(2)               <------ZmHOX2a(2)              <---------ARR14(2)              --------->ARR11(3)              <---------ARR14(3)              <---------AGP1              --------->ARR14(3)              <---------ARR11(3)                                                       <---------ANAC58             <---------CCA1(2)              ------>NtERF2                 --------->DAG2 --------->CCA1(2)     ---------->DOF2   ------->PIF5                    ---------->DOF2        ----- ----------ID1--------->ARR14(2)         <-------PIF5           ---------->DOF2        <---------ANAC58 ----->DOF2 ----------->ARR10          <---------LBD16       --------->YAB1    <------ZmHOX2a(1)<----   aagagacaagagagtagatcttggagaaagtgggacaatggcacggggacatgttatgccaattcataaagaagaaaaagaggacatgttcttgtcttat  18688800                                 <---------ICU4                                 --------->ATHB12                                 <--------HAHB4                                 --------->ATHB51                                <---------YAB1     <---------ARR14(2)         --------->ICU4                      <---------ARR11(3)     --------->ARR11(3)       --------------->AGL15                 <---------AHL20(1)     --------->ARR14(2)      ----------------->AGL2                 --------->AHL20(1)     <---------ARR11(3)  <---------ANAC58                     <-----------GT1     <-----------ARR10   <---------ANAC58                 <----------DOF2    <---------CCA1(2) ------>ZmHOX2a(1)                   <---------DAG2                  <---------ANAC58 ---->ANAC55(2)      <---------ANAC58    <----------DOF2 <---------DAG2                   <---------ANAC58 -----ANAC55(2)      <---------ANAC58<-----------GT1     <----------DOF2---------->DOF2   <---------ANAC46   gtaatcaaatcttcacatggggtccttgtgtgccattattagccttttattcacttgtgcctttttgcaatatataaagctaaaaacttcttgtgtgatt  18688900                                                                    --------->TOE2(3)                                                                    --------->TOE1(3)                                                                 --------->ANAC46                                                              <---------REM1(2)                                       <-----------GT1        --------->ZAT14                <-----------GT1  <------MYB46(1)          --------->ZAT6          --------------->AtSPL8     <---------DAG2              <------MYB83           <-----------GT1          <---------ANAC46     <----------DOF2           --------->ALFIN1    <---------ARR11(3)     --------->ARR11(3) --------->MYB46(3)         --------->DAG2       --------->ICU4  <---------ALFIN1<---------ANAC58 <---------MYB111(2)       ---------->DOF2       <---------YAB1<---------ALFIN1  <---------ANAC58   ccaacaacttttttgtttatacatttttaaaaagtgggtttttactaaaccatgattttaaccctacacaccttaagaccatgacttgtactactaaaaa  18689000                              <---------ANAC58                              <---------ANAC58    <---------ICU4                              <---------ANAC46   <------ZmHOX2a(2)                    <---------YAB1              --------->ARR11(3)                    <---------AtMYB61           <---------ARR11(3)       ---------->DOF2                 <---------YAB1          ------->TEIL                  <------ZmHOX2a(2) <---------TOE2(3)   tgccaatatttagagaattgttatggtcgatgtcttggaaatgtattttagatcattactcgttttgttttagatcaaagcactaaaatcaaaggttaag  18689100                    <---------------AGL15                 --------->REM1(1)                                        --------->TOE2(3)                 <-----------GT1                                        -------->P             <-----------HVH21                <------ZmHOX2a(1)        ------->GAMYB       <---------ARR11(3)                   <---------TOE2(2)         --------->MYB46(3)       --------->ARR11(3)        ----------->GT1       *TSS           <---------MYB111(2)      --------->CCA1(1)   --------->ANAC58--------->TOE1(2)     --------->ANAC58      --------->RVE1(1)   --------->ANAC58--------->TOE2(2)     --------->ANAC58   agcccaaaatatctctgttacaccattcaaggaaaacgtataaacataggatttagggacatcaacaagacaacaacctctattcaaatttagagtccat  18689200                                                                                              <------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              -------                  --------->LBD16                                                             <------                 --------->ANAC46                                                         --------->LBD16                 --------->ANAC58                                                        --------->LBD16                 --------->ANAC58                                                        --------->ANAC46                <---------LBD16                                                         --------->HSFB2a(2)              <---------ARR14(2)                                                        <---------HSFB2a(2)              --------->ARR14(2)         ----------->GT1                            <---------ANAC58            --------->MYB46(3)        ---------->DOF2                <----------DOF2<---------ANAC58            <---------MYB52(2)    <-----------GT1    <---------MYB46(3)        --------->ALFIN1   ttttgtatttagcaactatccgcaaaacaaatctattaacaaaagtttaaaactttggttcaaattcaaaacttttgggacgagtggcttcccgaaaatc  18689300                                                                               <---------AHL20(2)                                                                              <---------AHL20(1)                                                                              <---------AHL20(2)                                                                              --------->AHL20(2)          <-----------ARR10                                              --------->At5g28300 ---ARR11(3)         --------->YAB1                                     ----------->GT1           <<< -->ARR11(3)         --------->AHL20(2)                                --------->ZAT6           <xxxx -->ARR14(3)        <---------ATHB12                                  <---------At5g28300      <<<<<< ---ARR14(3)       ------>MYB83             --------->ARR11(3)       <-----------GT1      <---------- -->GLK1(2)        ------>MYB46(1)          <---------ARR11(3)    <---------ICU4    <-----------GT1<x ---ARR14(2)      --------->WOX13(1)   ----------->RAV1(1)<---------WRKY38(1)--------->ICU4  <xxxxxxx   ttggagtattagtatctcaccaatcaaatttcaagactcgacaacaaatctttagaagagtcaacaaatttttacagtaatttttttgactctcttcttc  18689400                   <<<<<<<<<TBF1                <<<<<<<<<TBF1             <<<<<<<<<TBF1  <<<<<<<<<TBF1          <<<<<<<<<TBF1  <<<<<<<<<TBF1       <<<<<<<<<TBF1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      ------>ZmHOX2a(2)    <<<<<<<<<TBF1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <---------GLK1(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        --------->GLK1(1) <<<<<<<<<TBF1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           --------->ARR11(3) <<<<<<TBF1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <---------ARR11(3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) <<<<<<<<<TBF1              <---------CCA1(2) <<<TBF1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          --------->ATHB12                        ------ --------------ANAC81 <<<<<<<<<TBF1                   <---------ATHB12 <---------ARR11(3)      <----- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <<<<<<<<<TBF1    <---------YAB1   --------->ARR11(3)     ------- xxxxxxxxxxxxxxxxsmallRNA(se3) <<<<<<<<<TBF1   <-----------GT1<---------AGP1                  <------   ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcatattttccctatgatttggatctctaaaatcttcaatccccatgttctaattta  18689500                                                                          --------->ARR11(3)                                                                          <---------ARR11(3)                                                                        ----------->GT1                                                                    <---------AHL20(2)                                                                  <---------YAB1                                                               --------->AHL20(1)                                                               --------->AHL20(2)                                                               <---------AHL20(1)        <---------ALFIN1                                       <---------AHL20(2)       <---------ZAT14                                     <---------AHL20(2)       --------->ZAT14                                    --------->ARR11(3)     --------->ANAC46           --------->YAB1            <---------ARR11(3)   --------->YAB1         --------->ANAC46                --------->AHL20(1)   <-----------GT1     --------->ARR14(2)------>MYB83     --------->AHL20(2) --->AHL20(2)          <---------ARR14(2)------>MYB46(1)  <---------AHL20(2)      <---------ANAC58 ----AHL20(2)       --------->YAB1     <---------MYB59    <---------AHL20(1)      <---------ANAC58 -->AHL20(2)       <---------YAB1   <-----------GT1 ------>ZmHOX2a(1) ---------->DOF2 ---AHL20(2)   <----------DOF2 <---------YAB1     ------>ZmHOX2a(2)--------->AHL20(2)        <-------   aaaaatcacaacactctctttatcatataccctattataaaccaaactttgatcctcgaatatattttattaaaaagataatattcgtgtttctcatgtt  18689600                                                                 <---------At4g35610                                                                 --------->ZAT2                                                                 --------->HSFC1(2)                                                                 <---------HSFC1(2)                                                                 --------->HSFB2a(1)                                                        --------->GLK1(2)                                                       <---------ARR14(2)                                           --------->ANAC46      <---------HSFB2a(1)                                           --------->ANAC58      --------->At4g35610        ---------->DOF2        <---------AHL20(2)      <---------ARR11(3)     --------->YAB1           --------->AHL20(2)       <---------GLK1(2)    <---------YAB1            <---------AHL20(2) --------->TOE1(3)             <---------------AGL15    --------->ICU4        <---------AHL20(2)    ----------->RAV1(2) ------>NtERF2    <---------TOE2(3)  --------->YAB1 <----------DOF2           --------->ANAC58     --------->GLK1(2)  ---------->DOF2 ----RAV1(1)    --------->TOE2(3)     --------->ANAC46 --------->ARR14(2)      --------------->AGL15   ggagtcataataaagaaacctttgtgttttaatttaatcccctccaagaaacctgaagattctaagaagctgccattaaaactaataaaggaagagagtc  18689700  Previous    Next  AGI:  At2g45310.1    Description:  GAE4 (UDP-D-GLUCURONATE 4-EPIMERASE 4); catalytic. Identical to UDP-glucuronate 4-epimerase 4 (GAE4) [Arabidopsis Thaliana] (GB:O22141); similar to GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3), catalytic [Arabidopsis thaliana] (TAIR:AT4G00110.1); similar to GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2), catalytic [Arabidopsis thaliana] (TAIR:AT1G02000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24535.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24537.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73016.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPr Range:  from: 18689155    to: 18691116    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g45315.1    Description:  other RNA Range:  from: 18689182    to: 18690884    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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