Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <---------AHL20(2)                                               <---------ANAC58            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                   <---------ANAC58            <----------DOF2                                                             ---------->ID1           <---------DAG2<---------AHL20(2)  <---------AHL20(2)                  <---------AHL20(2)        ------>ZmHOX2a(2)--------->AHL20(2) --------->AHL20(2)                   --------->AHL20(2)       <------ZmHOX2a(2) <---------AHL20(1) <---------AHL20(2)                   --------->AHL20(1)     xxxxxxxxxxxxxxxx>smallRNA(i) --------->ANAC58                       --------->ANAC55(2)    xxxxxxxxxxxxxxxx>smallRNA(i)  --------->ANAC58                       <---------ANAC46  <---------ANAC46    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------AHL20(1)           <---------ANAC55(2)<--------  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->AHL20(2)              <-------TEIL  <-----------RAV1(1) -----At4g35610          --------->YAB1 <---------AHL20(2)     --------->ANAC58  <---------AHL20(1) ---->At4g35610     <---------ATHB12   --------->AHL20(2)      --------->ANAC58 --------->AHL20(2)   ctccaagagatcgcctttgctaatcaataaaattgaacgcatttaataaaattgtaagagcaaactcgcactgatacgtagaataaatttgttgcttttg  18684000                                                           ------->MYC3                       -------              <---------ANAC55(2)                          <-------MYC3             --------->ANAC58   --------->ANAC58                                        ------->MYC2             --------->ANAC58   --------->ANAC46                          --------->ARR14(2)                     --------->ANAC55(2)   --------->ANAC58----------->GT1           <---------ARR14(2)                     <---------ANAC55(2) --DOF2------>NtERF2            ---------->DOF2<-------TEIL<-------MYC2        <---------ATHB12    --   ccttcacgacaccattacctatagttaatactccaaaagaaatagcagattcaacatacaacgtgcaagaccaaaaaacaaatgactcgtaatctccaga  18684100              --------->TOE2(2)        --------->YAB1    <---------ICU4   --------->ICU4   <---------YAB1 --------->YAB1           <---------ZAT18       <-----------HVH21                      ----------->RAV1(1) -->LBD16     --------->TOE1(2)      --------->TOE2(3)  <----------DOF2         ---------->DOF2 ------->GLK1(2)          --------->ZAT18      <----------DOF2            <---------CCA1(2)     -----   gaatcataattcataacatgggagattgtccacaaaaaacataaattccctttcatgtctttttgttagaaaacccatttcttaaggcccaacaaaaaac  18684200                                                                                         ---------->DOF2                                                                                         ============                                                                                         ============                                                                                      ------>MYB46(1)                                                                                      ------>MYB83                                                                                     --------->ANAC46                                                                                    --------->MYB46(3)                                                                                    ------->GAMYB                                                                                  >>>>>>>>>MYB98                                                                                 --------->MYB52(1)                                                                                 ------>MYB46(1)                                                                                 ------>MYB83                                                                                --------->MYB55(1)                                                                               <---------MYB52(2)                                                                               <---------MYB111(1)                                                                               <---------MYB59                                                                               --------->AtMYB61                                                                               <---------MYB111(2)                                                                               <---------MYB46(2)                                                 ----------------->AGL1       --------->ANAC46                                          <---------ANAC58                    <---------At4g35610                                          <---------ANAC58                    --------->ANAC55(2)       <-----------HVH21               <----------DOF2                   <----------DOF2--------->AtMYB61      <----------DOF2     <---------GLK1(1)     ------>NtERF2            ============================ ---->YAB1     <----------DOF2      <-----------GT1             ----------->RAV1(1) =================   ataatcccctttcatgtctttttgttagaaaccccatttatctttcttgaggcccaatttgaaaacccacattttctttcacctaacccaccaaagcctt  18684300                               <-----------HVH21                             ------->MYC3                             <-------MYC3                             -------->ABF1                    ------>MYB83                    ------>MYB46(1)                  --------->AtMYB61         <---------ANAC58    <-------MYC2         --------->O2        <-------MYC4         <---------ANAC58    ------->MYC4         <---------TGA1a     ------->MYC2                                                    <------MYB83         <---------O2       <---------TGA1a                                                  <-------         <---------ANAC46   <---------ANAC55(2)                                              <------MYB46(1)         --------->TGA1a    --------->ANAC55(2)                                             ---------      ----------->TGA1<---------MYB52(2)                                                    <--------  <-------MYC3    <---------MYB111(2)                                                       ---------  <-------MYC2    <---------MYB46(2)                                                        ---------  ------->MYC2   --------->ANAC46                                                           <--------  ------->MYC3   --------->ANAC58                                                           ---------  <-------MYC4   --------->ANAC58                                                           <-------- =====================================bZIP_DOF       <---------YAB1                        <--------P ==================bZIP_DOF --------->TGA1a        --------->YAB1                          <---------MYB55(1) ==================bZIP_DOF <---------O2          <---------YAB1                          <-------GAMYB ==================MYC_MYB  --------->O2     <---------MYB46(3)                      *TSS<---------MYB46(3)   tgcacatgttgacgtgaacaccaaactaacacgtgtcatactgccagtggttatgataaatgctcataccataccagagtcatagagtttttggttggtg  18684400                                                                               ---------->DOF2       <---------ANAC46                                                      <------NtERF2      <---------LBD16                                                       <---------RAP2.6(3)    ----------->HVH21                                                       ------>NtERF2--------->ANAC58  --------->CCA1(2)                                                         --------->LBD16 <---------ARR11(3)                                                        --------->ANAC46 --------->ARR11(1)                                      ----------->GT1   --------->RAP2.6(2) --MYB46(3)                                          ---------->DOF2       --------->RAP2.3(2) >MYB111(2)                                      ----------->RAV1(1)       --------->RAP2.3(3) -DEAR3(1)                          ------->GAMYB------>MYB46(1)           --------->DEAR3(1) >MYB46(2)                        -------->P  --------->ANAC46            --------->ERF1 --------->ANAC58 >MYB55(2)                        ------>MYB83--------->ANAC58            --------->RAP2.3(1) -AtMYB61                         ------>MYB46(1)------>MYB83           --------->ARR14(2)          - >MYB111(1)                     --------->MYB46(3) --------->MYB46(3)   <---------ARR14(2)          < -MYB46(3)              <---------CCA1(2)     --------->ANAC58        ---------->DOF2    --------->ANAC46   aaagatttgacggatgccttcttctcatttctcaccaactccctccaaacccaacaaaagtgtttatattagcaaagccgccaaagtgtaaacgaaagtt  18684500                                 <------ZmHOX2a(1)                      <---------ANAC55(2)                      --------->ANAC46                      --------->ANAC55(1)                      <---------ANAC55(1)                      --------->ANAC55(2)                      --------->ANAC58                      <---------ANAC58                      --------->ANAC58                      <---------ANAC58        <-----------GT1                                   -----                <---------ARR11(3)    <------ZmHOX2a(2)                                         -----                --------->ARR11(3)   --------->ARR11(3)                                       <------NtERF2 -------->AHL20(2)======================HOX2a_HOX2a                 <---------ANAC58        <-------- ---------AHL20(2)------>ZmHOX2a(2)  <---------ARR11(3)             <---------ANAC58     <---------DEAR3(1)   tataaatttcatttctgtgatcttacgtaattggaggaagatcaaaattttcaatccccattcttcgattgcttcaattgaagtttctccgatggcgcaa  18684600                                                                    <---------ARR14(2)                                                                    <-----------ARR10                                                                    --------->ARR14(2)                                                                ------->GAMYB                    --------->ZAT14                            --------->ANAC58                    --------->ZAT18                            --------->ANAC58                   --------->ALFIN1                            --------->ANAC46      --------->ARR14(2)                                     <---------DOF5.7(2)      --------->GLK1(2)                                     <---------WRKY12                      <--      <---------ARR14(2)      <---------CCA1(2)             <---------WRKY38(1)                   ---     <---------ARR14(2) --------->ARR14(2)                  <---------WRKY45                      ---     <---------GLK1(2)  <---------ARR14(2)                 --------->WRKY18(1)                    <-- --------->At4g35610<---------ZAT14                       <-----------HVH21                      ---- <---------At4g35610--------->At4g35610             <---------GLK1(1)             --------->ARR14(2) ---->ANAC58     <---------ANAC46               --------->HSFB2a(2)<---------CCA1(2)          ------- ---->ANAC58     <---------ANAC58               <---------HSFB2a(2)--------->GLK1(1)          ------- -ANAC46         <---------ANAC58  <---------CCA1(2)--------->GLK1(1)     <---------DAG2      -------   gttagcagaatctgcaatggtgtgcagaacccatctcttatctccaatctctcgaaatccagtcaacgcaaatctcccttatcggtttctctgaagacgc  18684700                                                             --------->MYB52(2)         ------->PIF5                                        --------->ATHB12         <-------PIF5                                      --------->DOF5.7(2) --------->At4g35610                                       <---------MYB52(1)   <-----------------AGL1 -------At4g35610                                         --------->TOE2(3)    ---------->ID1 ------>ZAT2                    --------->ALFIN1         ----------->GT1    <-------TEIL --------->ARR11(3) ------>At4g35610               <---------ANAC46         <---------ANAC46<---------ZAT2  <-----------HVH21 -------ZAT2                  <---------ANAC46         <---------TGA2(2) --------->At4g35610 ------->RAV1(1)             <------NtERF2            ----------->TGA1   --------->ZAT2<---------TOE2(3) -->ANAC46                  <-----------HVH21         ----------->HVH21  <---------At4g35610 -->ANAC58                 <---------DEAR3(1)    --------->ALFIN1    <----------CDC5   <---------TOE1(3) -->ANAC58     <---------ARR14(2)              --------->ALFIN1<---------WOX13(1) ------>ZmHOX2a(1)   agcagcatccacgagcttatccgatttcgtcgtcgtggggattgaagaagagtgggatgacgttaattggctctgagcttcgtcctcttaaggtcatgtc  18684800                       <---------ANAC46                     <-----------HVH21                ---------->DOF2             <------NtERF2            --------->LBD16                               --------->LBD16  ==========================           <---------ANAC46              <---------------AGL15             ------>ZmHOX2a(1)           <---------DEAR3(1)<---------------AtSPL3     <---------LBD16    ==========================          <---------LBD16    --------------->AtSPL8<---------GLK1(1)     ----------->RAV1(2)        --------->ANAC46 <------NtERF2  ----------------->AGL2       <---------At4g35610            -        <---------DEAR3(1)   <---------------AtSPL8--------->GLK1(1) --------->At4g35610            <       <---------LBD16 <---------DEAR3(1)--------------->AGL15     <-----------GT1                  -   ttctgtttccacggcggagaaagcgtcggagattgtacttcaacccattagagaaatctccggtcttattaagcttcctggctccaagtctctatcaaat  18684900  Previous    Next  AGI:  At2g45300.1    Description:  3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase. Identical to 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor [Arabidopsis Thaliana] (GB:P05466;GB:O22142;GB:Q501E1); similar to 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative [Arabidopsis thaliana] (TAIR:AT1G48860.2); similar to 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative [Arabidopsis thaliana] (TAIR:AT1G48860.1); similar to 3-phosphoshikimate 1-carboxyvinyltrans Range:  from: 18684385    to: 18687146    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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