Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  <---------O2                              ----------->HVH21                                --------->TGA1a                           <------NtERF2                                ===============================bZIP_DOF   --------->ATERF1(1)                           --------->AtLEC2                              <---------ATERF1(1)                     <-------PIF5                                        ------>NtERF2                     ------->MYC2                                        <-----------HVH21                     ------->PIF5                                        <-----------TGA1                     <-------MYC2                                       --------->DEAR3(1)                     ------->MYC4                                       --------->RAP2.6(2)                     <-------MYC4                                       --------->bZIP60(1)                     ------->MYC3 --------->ALFIN1                    ------>NtERF2                     ------->PIF4<-------MYC3                        --------->ANAC58                     <-------MYC3------->MYC3                        --------->ANAC46                     <-------PIF4--------->TOE1(2)               <---------At4g35610                    ======================bZIP_bZIP              --------->ZAT2                    ===========================================bZIP_DOF --------->RAP2.3(3)                    <---------O2<---------ANAC46                 --------->At4g35610          -------                    --------->TGA1a                              <---------ZAT2 ------>MYB46(1)                    --------->O2--------->O2                  <---------MYB52(1)------>MYB83<--------                    <---------TGA1a                          <-----------HVH21--------->DREB2C(2)                    <---------ANAC55(2)                      <-----------TGA1 --------->DEAR3(1)    <                    --------->ANAC55(2)                     <---------ANAC46  ----------->HVH21     -                   ------------>OsbHLH66                    <---------ANAC58  --------->MYB46(3)    < ----->GT1   =============================bZIP_DOF          <---------ANAC58 --------->DEAR3(2)    <- --->ANAC58  =================bZIP_DOF                <---------TOE2(3) <---------bZIP60(1)--------->MYB52(1) --->ANAC58  ---------->DOF2    <---------TGA1a     ---------->DOF2  --------->ANAC58<--------ZAP1<--   aaaaaatgagcaaaataaagacacgtgctatgcaacgtgggatgttgagagaaaaaaaggtttcgtcagctacgccgtcaccgactgggtcaataccgga  18679400                                                                                           ------>MYB46(1)                                                                                         <---------MYB111(1)                                                                                         --------->DEAR3(1)                                                                               <------MYB83-------->P                                                                               <------MYB46(1)                                                                              --------->MYB59                                                                              <---------TOE2(3)    --                                                                            --------->ICU4--------->MYB55(1)                                                                         --------->AHL20(2)------>MYB83                                                                       ----------->GT1   <---------MYB55(2) -->LBD16                                                            ---------->DOF2     --------->AtMYB61 -LBD16                                                          <---------ARR11(3)      <---------MYB111(2) ------MYB83                         --------->ANAC58            --------->ARR11(3)      <---------MYB46(2) ---------->GT1                      --------->ANAC58            --------->GLK1(2)       --------->MYB46(3) ------MYB46(1)             ------>ZmHOX2a(1)           <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------ALFIN1 --------MYB46(3)     ------->TEIL ---------->DOF2<------NtERF2 --------->RVE1(1)       --------->MYB46(3) ------P----------->GT1    --------->TOE2(3)     ------>NtERF2--------->AHL20(2)  <-------TEIL   <---   gttggtgaattggtgactaaaatgtatttcctaaatctaaagcaattttgcccccaaaaaaaaaaaaaatctaaagtaattaggttcttcaccaaccctt  18679500                                                                                 --------->YAB1                                                                                 <--------ATHB1                                                                                 -------->HAHB4                                                                                 <--------HAHB4                                                                                 --------->ATHB51                                                                                 --------->ATHB12                                                                                 <---------ICU4                                                                                <---------ATHB51                                                                                --------->ICU4                                                                                --------->AHL20(2)                                                                                <---------YAB1                                    ------>NtERF2                            <---------YAB1                             <---------ATHB12                               <---------AHL20(2)                             --------->MYB46(3)                             --------->AHL20(2)                            ------>MYB46(1)                               <---------YAB1                            ------>MYB83                                 <---------AHL20(2)         <                            -------->P                               <---------ICU4                 -                           --------->MYB55(1)                        -------->ATHB1                 <                          <---------MYB111(1)                        --------->YAB1                 -                          <---------MYB55(2)                        <---------ATHB51               --                          --------->AtMYB61                         --------->ICU4                 <-                          --------->MYB46(3)                        <---------AHL20(2)             <-                       --------->ANAC58                             --------->AHL20(2)        -------                       --------->ANAC46                          --------->AHL20(2)           -------           <----------DOF2--------->DEAR3(1)                     <---------AHL20(2)          --------          <---------ANAC58<---------MYB111(2)                    --------->AHL20(1)    <---------ANAC46          <---------ANAC58<---------MYB46(2)                    --------->AHL20(2)     ----------->GT1     <---------ICU4    --------->ANAC58     --------->WOX13(1)  <---------AHL20(2)     <---------ANAC58 ------->YAB1   <---------ANAC58    <---------RAP2.6(3)     --------->AHL20(2)--------->YAB1--------- --------HVH21  <---------ANAC58   --------->RAP2.6(2) <-----------GT1 <---------YAB1  <---------ANAC58   gtcataaccatggcttttgcttaacacaccaaccatgccgcattgtcaatctattttttacttaaattaaattattattttaataattagcgtaaaaagc  18679600                                                                                  ===================                                                                                  ===================                                                                                  ------>ZmHOX2a(1)                                                                         <---------GLK1(2)                                                                         <------------CBF --------ATHB1                                                         --------->ICU4 -------->ATHB12                                                       <---------YAB1 ---------ICU4                                                      <------NtERF2 =================== -------->YAB1                                                     <---------RAP2.6(3) ------->ICU4                  --------->ARR14(1)                  <-----------HVH21 --------ATHB12               <---------GLK1(2)                   --------->RAP2.3(2) --------YAB1                 --------->ARR11(1)                  --------->RAP2.3(3) -->ANAC58                  ----------->ARR10                     --------->RAP2.6(2)           ----- -->ANAC58          ---------->DOF2      ----------->GT1        --------->At4g35610            ------ ->DAG2       --------->AHL20(2) ----------->GT1                <---------At4g35610          -------- ->DOF2       <---------AHL20(2)<-------TEIL ---------->DOF2   --------->DEAR3(1) <----------DOF2<---   aatgattagttgaaaattaaacaaaagaattagattcgaaaaattgttaaagccatagagcatcacagccgtcaagattgtgtcctttctgaatccaacg  18679700            --------->ATHB12          ------>ZmHOX2a(2)          =====================================HOX2a_HOX2a        <---------ARR14(3)        --------->ARR14(3)        --------->ARR11(3)        <---------ARR11(3)   <------ZmHOX2a(2)  --------->AGP1  --------->ARR14(2)  <---------ARR14(2) --------->At4g35610 ================HOX2a_HOX2a ===============HOX2a_HOX2a             ------>ZmHOX2a(1) =========HOX2a_HOX2a   --------->YAB1  <---------------AGL15              <-----------GT1 -->GAMYB<------ZmHOX2a(2)             --------------->AGL15  <----------DOF2 --->MYB46(3)<------------CBF    ------->GAMYB             --------->GLK1(2) <-----------GT1 ->MYB52(1)<---------YAB1     ----------->RAV1(1)       *TSS<---------HSFC1(2) --------HVH21        <---------YAB1  ----------------->AGL3--------->HSFC1(2)          <---------MYB52(1)   gtcagatcgagatctcattggtttattaatagcaacagtctcctaaaataggtttgcagagaagctttctcttctattttctctctctcagttaaccaga  18679800                                                      --------->ANAC58                                                      --------->ANAC58                                                      --------->ANAC46                                         <---------ARR11(3)                                        <-                                       --------->ANAC58                                          ----           <---------ANAC58            --------->ANAC58    <---------CCA1(2)                     ----           <---------ANAC46   --------->ZAT18       --------->ANAC46                <---------ANAC58           <---------ANAC58   <---------ZAT18  ------>ZmHOX2a(1)                    <---------ANAC58   gagagcatcaatggcttctacttcttctctagcgctctcacaagctctccttacacgagccatctctcacaatggctctgaaaactgcgtctctatacca  18679900                              ------->TEIL                              <<<<<<<<<<<<<<<<<LFY                ------>NtERF2                              ----------->RAV1(1)        --------->ANAC58                             --------->ANAC46            --------->ANAC46                            --------->MYB46(3)        <---------ETT(2)                           --------->ANAC58           --------->DEAR3(1)                           <-      --------->At4g35610  --------->ANAC46         <-----------HVH21                              <-      --------->ZAT14      --------->ANAC58 <-----------ARR10 --------->ANAC58          ------>NtERF2      <---------At4g35610<---------ALFIN1  <---------CCA1(2)  --------->ANAC58         --------->ANAC46 ---------DOF2<---------ARR14(2)        <------NtERF2 <---------DEAR3(1)               --------->DEAR3(1) ----->At4g35610        <---------REM1(2)<---------ALFIN1--------->ANAC58  --------->WOX13(1)      <- ----->ZAT2   --------->ARR14(2)       ------>NtERF2--------->LBD16      <------ZmHOX2a(2)        <--   gctttctctgctctcaaatccacttctccacgcaccagtggcaccatctcttcccgtcgacgaaacgcctccacgatcagtcactctctccgccctctgg  18680000          <---------ANAC46         <------NtERF2         --------->RAP2.3(1)        ------>NtERF2       --------->RAP2.3(3)       ------->GAMYB       --------->DEAR3(1)       --------->RAP2.6(2)       --------->RAP2.3(2)      --------->RAP2.3(1)      --------->ERF1      --------->RRTF1(1)      --------->DEAR3(2)      --------->ATERF1(1)      --------->RAP2.6(1)      --------->MYB46(3)     <---------ATERF1(1)     ------>NtERF2     <---------ZAT2     --------->At4g35610     --------->ZAT2                                          --------->ZAT14     <---------At4g35610          <---------YAB1          <---------DEAR3(2)                <-------GAMYB  --------->ZAT14       ----------->HVH21       <---------WOX13(1)   <------ZmHOX2a(2)     <---------MYB46(3) --------ANAC58       --------->YAB1            <--------P<------MYB83                    <---------RAP2.6(2) --------ANAC58       <---------ICU4   <---------ANAC58   <------MYB46(1)                <-------TEIL --------ANAC46      <---------ATHB12  <---------ANAC58  <---------DEAR3(1)   <---------HSFB2a(2) -----TEIL--------->DEAR3(1)   <---------ARR11(3)        <---------DREB2C(2)  --------->HSFB2a(2)   ttcgtgcagccgccgtagaggcaatcgtgacaagttctgattcgtccctggttgataagtcggtgaacacgatcaggtttctggcaatagatgcggttga  18680100                                                                                             ------>ZmHOX2a(1)                                                                                             ========                                     <---------ZAT14                                        ---------                    <---------ARR11(3)                                      --------->YAB1 <---------ICU4                    --------->ARR14(2)                                    ----------->GT1--------->GLK1(2)                    --------->ARR11(3)                            --------->bZIP60(1)    <---------ARR14(2)                  --------->LBD16    --------->ZAT14              <---------bZIP60(1)    --------->ARR14(2)           <-----------HVH21     <---------DEAR3(1)         <---------TOE1(1)     ------->GAMYB         --------->MYB59   ------>ZmHOX2a(1)                <---------TOE2(1)  <-----------GT1   gaaggcgaaatcaggtcatccaggtcttcctatgggctgtgctccgatgtctcacattttgtacgatgaagtcatgaagtataaccccaagaatccttac  18680200                                                                             --------->ANAC58                                                                             ----------->HVH21                           --------->ZAT2                                    --------->ANAC58                           <---------ZAT2                               ------>NtERF2                 <---------ANAC58                                     <---------ANAC58                 <---------ANAC58                                     <---------ANAC58      --------------------->WRI1          ------->TEIL         <---------ALFIN1      ------->GAMYB        --------->At4g35610                 --------->REM1(1)        <---------TOE2(3)    <---------At5g28300    <---------At4g35610               <----------DOF2 --------->ANAC46   <-----------GT1        <-----------RAV1(1)        --------->ANAC58<---------ZAT2     <---------TOE1(3) ==================HOX2a_HOX2a           <---------AtLEC2  --------->At4g35610       <---------MYB52(1) >TOE2(3)   ------>ZmHOX2a(2)           <-------TEIL --------->ANAC58--------->ZAT2 <----------DOF2   tggtttaaccgtgatcgtttcgttctctctgctggacatggatgcatgttgcaatacgctctgcttcaccttgctggctacgacagcgttagggtttgtg  18680300  Previous    Next  AGI:  At2g45280.1    Description:  ATRAD51C (Arabidopsis thaliana Ras Associated with Diabetes protein 51C); ATP binding / damaged DNA binding. Identical to DNA repair protein RAD51 homolog 3 (RAD51C) [Arabidopsis Thaliana] (GB:Q8GXF0;GB:O22144;GB:Q8RY30;GB:Q93X07;GB:Q9FT75;GB:Q9FT80); similar to ATDMC1 (RECA-LIKE GENE), ATP binding / DNA-dependent ATPase/ damaged DNA binding [Arabidopsis thaliana] (TAIR:AT3G22880.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24528.1); contains InterPro domain DNA repair Rad51/transcription factor NusA, alpha-helical; (InterPro:IPR010995); contains InterPro domain RecA bacterial DNA recombination; (InterPro:IPR001553); contai Range:  from: 18677083    to: 18679351    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g45290.1    Description:  transketolase, putative. similar to transketolase, putative [Arabidopsis thaliana] (TAIR:AT3G60750.1); similar to unknown [Populus trichocarpa] (GB:ABK95795.1); similar to Transketolase, chloroplast precursor (TK) (GB:Q43848); similar to unknown [Populus trichocarpa] (GB:ABK92500.1); contains InterPro domain Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II; (InterPro:IPR009014); contains InterPro domain Transketolase C-terminal-like; (InterPro:IPR015941); contains InterPro domain Transketolase, N-terminal (InterPro:IPR005474); contains InterPro domain Transketolase, central region (InterPro:IPR005475); contains InterPro Range:  from: 18679756    to: 18682980    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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