Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    *TSS           ------>ZmHOX2a(1)       --------->ARR14(2)                                                       <---------TOE2(2)       <---------ARR14(2)                                                      <-----------RAV1(2)       --------->GLK1(2)                                                 --------->YAB1      <---------GLK1(2)                       -------->P                <---------YAB1     <---------HSFB2a(2)   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       --------->MYB46(3)    ---------->ID1<---------TOE1(2) -------->ZAT2    <---------AHL20(2)     ------->GAMYB   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -------->At4g35610             <------MYB83--------->AtMYB61   ===========================RAV ---------ZAT2   --------->AHL20(2)   <-----------GT1<----------DOF2    <---------ATHB12   --------->HSFB2a(2) ---------At4g35610             <------MYB46(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->CCA1(2) ->AtMYB77--------->TOE2(3)   <--------P--------->MYB46(3)      <-----------RAV1(1)<--------P   ccagctcagaatcctcattttaaattcgaagggttggaattaaccatcaacccttctttcaagtttttgttgctatcattctcaggtaagataccagaag  18662600                                                           <---------At4g35610                                                      --------->TGA1a                                                      <---------O2                                                      --------->O2                                                      <---------TGA1a                                                    ----------->RAV1(1)                                                  ------>NtERF2                                                 >>>>>>>>>AtERF-3                                 <---------ICU4<---------ZAT2        ------>ZmHOX2a(2)              ------>NtERF2      --------->YAB1--------->ZAT2   <---------KAN4(2)           --------->At4g35610   --------->ATHB12>>>>>>>>>AtERF-4  --------->ARR11(3)           <---------ANAC58     --------->ICU4 --------->At4g35610 <---------ARR11(3)           <---------ANAC58     <---------YAB1 <---------At4g35610--------->YAB1       <------------CBF   <------NtERF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              --------->AtLEC2      --------->ATHB12 <------ZmHOX2a(1)<---------AHL20(2) --------->At4g35610    --------->GLK1(1)   agtgagagcgattggctgccactgaggaggcagaatgattagataattgagctgccacatgagcagaatgatcttgatgaacagagttctccttgcagat  18662700                                                            <-----------HVH21                                                       <---------ZAT14                           <---                                                       --------->ZAT14                       <-------                                                       --------->ZAT18                       <-------                                                     <---------ZAT18                        <--------                                                    <---------ANAC58                --------->GLK1(2)                  ----------->HVH21                 <---------ANAC58               <---------GLK1(2)              <---------ANAC58                      <---------ANAC46               <---------ARR14(2)              <---------ANAC58                   --------->ALFIN1                  --------->ARR14(2)            ------->TEIL                    <------ZmHOX2a(1)                    ----------->ARR10---         <---------REM1(1)       ---------->DOF2 <---------AtMYB61       <---------YAB1     <--------   tgagctagaagatgaagcttgtgaccctaacctttcaaagacagaaggagagtggtgtgctctgtcatttgaattacgatggccagattctcttgctttt  18662800                                                                --------->At4g35610                                                               ------->GAMYB                                                              --------->MYB46(3)                                         <---------TOE2(3)   -------->P                                         <---------TOE1(3)   ------>MYB46(1)                                      <----------CDC5        ------>MYB83    <---------WOX13(1)               <---------ZAT2         ------>MYB83   <---------ANAC58                  --------->ZAT2         --------->MYB52(1)   <---------ANAC46                  --------->At4g35610    ------>MYB46(1)   <---------ANAC58                  <---------At4g35610  <---------MYB59 ------YAB1  -------->P            <---------DEAR3(1)     --------->MYB46(3)                <-------- ---DOF2     ------>MYB83         <---------At4g35610    --------->ANAC58             --------->TOE2(2) --DAG2      ------>MYB46(1)      --------->ATERF1(1)    --------->ANAC58             --------->TOE1(2) -ANAC58    <---------ALFIN1     <---------ATERF1(1)--------->HSFB2a(2)       ----------->GT1       < ------>ATHB12 <---------DAG2   --------->ZAT18     <---------HSFB2a(2)    <---------At4g35610     <- -ANAC58 ------>ZmHOX2a(2)      <---------RAP2.3(3)<---------LBD16  ---------->DOF2  ----------->RAV1(2)   tcattgcttgatcccaacctttcgaaaacagaagggggctgctgaggtttttctccagaacccaaccgctcaaagacagatggtgaaacctgagactctt  18662900                                              <---------YAB1                                            --------->ATHB12                                            --------->ATHB51                               <---------bZIP60(1)                                            <---------ICU4                                 --------->O2                                            <--------HAHB4                              --------->ANAC46                                            -------->ATHB1                              --------->ANAC58                                           --------->ICU4                               --------->ANAC58   --------->At5g28300            <---------ICU4                             <---------YAB1--------->bZIP60(1)  --------->LBD16                <---------ATHB51                           --------->AHL20(1) --------->LBD16             --------->AHL20(2)       --------->WRKY38(1)  --------->ATHB51<---------O2 ---ARR10    --------------->AGL15--------->YAB1      --------->WRKY12     <---------AHL20(2) ---------LBD16        ---------->DOF2     <---------YAB1         ---------->DOF2       ----------->HVH21 --------LBD16 <---------GLK1(2) <---------AHL20(2)<---------MYB46(3)      --------->AHL20(2) <------   ctcccggtgaattttcagattttagaaaagaataaataatgaagaattattagtcgttgacaaaacaaaaaagagaattattttagtcacacgacgtcgt  18663000                                                                          --------->LBD16                                                                         --------->DEAR3(1)                                                                        --------->DEAR3(2)        <--                                                                       --------->MYB52(1)       -----      --------->TOE2(3)                                               --------->ANAC46         <-----     ----------->GT1                        <---------CCA1(2)         <---------ALFIN1   --------->KAN4(2) ---ANAC46   *TSS                         --------->O2       --------->YAB1         <---------TOE2(3)   ttagaatatgttaattttcatcaagtcttggataaaccctagactcgtctctctatttctctatcaaaattcacaccggcgattttgagattgttctctg  18663100                                                                                                <----                                                                                   --------->HSFB2a(2)  <---------ANAC58  <---------TOE2(3)            ------->TEIL                      <---------HSFB2a(2)  <---------ANAC58  --------->ANAC58           <-------TEIL                       <---------ANAC46 -------WOX13(1)    --------->ANAC58        --------->At4g35610           --------->ZAT2     <------- ---->ATHB12    --------->GLK1(2)           <---------At4g35610        ------>ZmHOX2a(1)    <-------- ----YAB1 --------->LBD16          ----------->GT1                <----------DOF2------>NtERF2  -----   attggcttaatccgagagaatcaaggaattgaatggccagtgaatcagatgcatcgagcattgctactctttcctgtgctcgctgcgagaagcctgcaca  18663200      <---------ANAC55(2)      --------->ANAC55(2)                           <------MYB83 -----ARR11(3)                           <---------ANAC58        --------->At4g35610 --ALFIN1   <-----------GT1    <-----------GT1      <------MYB46(1) -ZAT14  ------->TEIL      <----------DOF2         --------->MYB111(1)---------->DOF2       --------- ---->ARR11(3)       <<<<<<<<<TBF1       <---------ANAC58        <---------At4g35610<---------AHL20(2)   tcttcagtacgtatttactcttcttcttccttttctctatttgacttgcatagttggtagtcaatttagctccaaagttcgagtttttaatagatgattt  18663300                                                                                        <---------ICU4                                                                                      <---------YAB1                                                                                    --------->AHL20(2)          <----------DOF2                                                <---------ANAC58         <---------ANAC46                                        --------->AHL20(2) --------->ATHB51         <---------ANAC58                                     <----------DOF2      <---------YAB1      <---------MYB52(1)                                     <---------ANAC58      --------->ICU4    <-----------RAV1(1)              <---------At4g35610     <---------ANAC58   <-------TEIL >ATHB12 <---------ANAC58   <------ZmHOX2a(1)          <-------TEIL      <---------ANAC58         ---   cgataactgttgcttttagtatatgttagaggaatgggatgctgatgttcacatggattcatggctttttaatatgcgtagtttcattatttatggctct  18663400                                                                        <---------ANAC58                                                                        --------->ANAC55(2)                                                                        <---------ANAC55(2)                                                                        <---------ANAC55(1)                                                                        <---------ANAC58                                                                        <---------ANAC46                                                                       <-------TEIL                                                                     <---------MYB52(1)                             <-------TEIL                          <---------------AtSPL3                   --------->ALFIN1                                <---------------AtSPL8                 --------->ZAT2                                    --------->HSFB2a(2)         ------                 --------->At4g35610                           <----------DOF2           <----------DOF2                 <---------At4g35610                     --------->ANAC58               <---------DAG2                <---------TOE2(2)                        --------->ANAC46            <-----------GT1<                <---------TOE1(2)               ------>ZmHOX2a(1)  <---------HSFB2a(2)  --------->TOE2(3) ------>ATHB12 <-----------RAV1(2)     ---------->DOF2   --------->ANAC58         <----------DOF2   <   tgattcgaattgaactcgcaggtgtccgaaatgcatagacttaaagcttcctcgtgaacaagcctctttctggtacgtgtctggctttaaccttttttga  18663500  Previous    Next  AGI:  At2g45230.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 3.9e-46 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus) Range:  from: 18658394    to: 18662518    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g45240.1    Description:  MAP1A (METHIONINE AMINOPEPTIDASE 1A); methionyl aminopeptidase. Identical to Methionine aminopeptidase 1A (MAP1A) [Arabidopsis Thaliana] (GB:Q9SLN5;GB:Q548T6;GB:Q8LAQ1); similar to MAP1C (METHIONINE AMINOPEPTIDASE 1B), metalloexopeptidase [Arabidopsis thaliana] (TAIR:AT1G13270.1); similar to methionine aminopeptidase 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47866.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24517.1); similar to methionine aminopeptidase 1 [Ananas comosus] (GB:ABB91774.1); contains InterPro domain Peptidase M24A, methionine aminopeptidase, subfamily 1; (InterPro:IPR002467); cont Range:  from: 18663013    to: 18666151    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version