Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <-----------RAV1(2)              --------->YAB1            <---------WRKY18(1)             <---------YAB1            ----------->HVH21                   <------ZmHOX2a(2)          <-------TEIL            <---------At4g35610                     <---------ARR11(3)        --------->ARR14(2)  --------->ARR14(1)                          --------->ICU4        <---------TCP16(1) --------->ARR11(3)                       <-----------HVH21   ----------->RAV1(2)      --------->LBD16      <---------GLK1(2)                       --------->DEAR3(1)   <---------At4g35610    <---------LBD16        --------->ARR14(2)         --------->At4g35610 --------->ARR11(3) --------->ARR14(2)        <---------ARR11(3) ====================================HOX2a_HOX2a <---------ARR14(2)        <---------ARR14(2) <------ZmHOX2a(1)<---------ZAT14          --------->At4g35610   gcagaacccgggtccatgataagtctcaagatactctgctcttgaccaggagaagaagcagagagaacaccgtcaagatcatccaaacccatctgactac  18626800                                                               <---------O2                                                               <---------ANAC46                                                               <---------TGA1a                                                               --------->TGA1a                                                              <------NtERF2                                                             ------>NtERF2                                                            --------->RAP2.3(3)                                                            --------->RAP2.6(2)                                                            --------->RRTF1(2)                                                            --------->ATERF1(2)                                                            --------->DREB2C(2)                                                            --------->RAP2.3(2)                                                            <---------DEAR3(1)                                                            --------->DEAR3(1)                                                            --------->RRTF1(3)                                                           --------->RAP2.3(1)                                                           --------->ATERF1(1)                                                           --------->RAP2.6(1)                                                           --------->RRTF1(1)                                                           --------->ERF1                                                           --------->ORA47(2)                                                          ------>NtERF2                                                         --------->AtMYB61                                      <--------P         --------->DEAR3(1)                                      ===================================MYC_MYB                                    --------->ALFIN1     --------->DREB2C(2)                                    <-----------RAV1(1)  --------->ANAC46                           <---------ARR14(2)            <---------ALFIN1                           --------->ARR14(2)            ------->GAMYB                           ----------->HVH21          <---------ALFIN1                           <---------MYB52(1)         --------->AtMYB61                          ===============================================MYC_MYB                          <-------GAMYB          --------->ABI4(2)                         <---------MYB46(3)  <---------DREB2C(2) ----------->HVH21                         <---------DEAR3(2)  <---------DEAR3(1)--------->O2                        <---------DEAR3(1)   <---------ANAC46--------->ABI4(1)                        <---------ANAC46<------MYB83 --------->MYB46(3)                       <---------MYB52(1) ----------->TGA1<---------ATERF1(1)          <---------AtMYB61                     <---------DEAR3(1) <------MYB46(1)  ================MYC_MYB     <---------MYB46(3)                     <---------ATERF1(2)<---------MYB46(3)--------->ABI4(1)         <---------AtMYB61                     --------->DEAR3(1)<---------AtMYB61--------->MYB46(3)          <---------DEAR3(1)               <---------ICU4    <---------AtMYB61<---------SPL7--------->LBD16     --------->ALFIN1               --------->YAB1    --------->ALFIN1<---------MYB46(3)            <---------ANAC58              <---------YAB1 <---------At5g28300--------->ALFIN1<-----------HVH21--------->ALFIN1        <---------YAB1------------>AtMYB77----------->HVH21--------->DEAR4(2)  <---------ANAC46    --       --------------------->WRI1<---------DEAR3(1)  <---------ABI4(2)         <---------ANAC58 -----     <---------YAB1 <---------LBD16 <---------ANAC46--------->SPL7     <------ZmHOX2a(1)<---------MYB46(3)   atttattgttattgttatcatcaccggcggttacggtggtgttggtgacggtggtaccaccgccgccgtgagaggaagacagcgtggtggtggtagaaga  18626900                                                     --------->At5g28300                                                  <---------LBD16                                                  <------NtERF2                                                 ------>NtERF2                                                <---------ARR14(2)                                                --------->ARR14(2)                                               <------NtERF2                                               --------->At4g35610                                               --------->ATERF1(1)                                               <---------At4g35610                                              <---------DEAR3(2)                                              <---------RAP2.3(1)                <---------ARR11(3)                                              ------>NtERF2                      --------->ARR14(2)                                              <---------ATERF1(1)--------->At1g77200                                             <---------RAP2.3(3) --------->DEAR4(1)                                             <---------DEAR3(1)  --------->DREB2C(2)                                            --------->ATERF1(1)  ------->GAMYB   <---------ARR14(2)                                           <-----------HVH21     <---------ETT(1)--------->ARR14(3)                                          <---------TGA1a        --------->DEAR3(1)------>ZmHOX2a(2)                                          <---------O2          --------->DEAR3(2)<------ZmHOX2a(2)                                          --------->TGA1a      --------->MYB52(1)--------->ARR11(3)                                          --------->O2        --------->AtMYB61  <-----------ARR10                                          ===============================MYC_MYB <---------ARR14(3)           <------ZmHOX2a(1)     <---------HSFB2a(2)--------->LBD16              --------->AGP1<----- ------->YAB1    <------ZmHOX2a(1)    --------->DEAR3(2)     --------->MYB46(3)----------->ARR10 ---->YAB1--------->ZAT18        --------->HSFB2a(2)----------->GT1  ----------->RAV1(1)       <-----   ataagaagcgagaggactaggacttcttagagcgtcgagaacagacgtcggctccggtaaaaaaccaccgacaacataaccaagatcttcttgttttgct  18627000                     <---------GLK1(2)                     --------->ARR11(3)                                <---------ALFIN1                     <---------ARR11(3)                             --------->DEAR3(1)                     <---------ARR14(2)                            --------->ANAC58          --------->ATHB12      --------->ARR14(2)                 --------->ANAC58         --------->ICU4         <---------ARR14(2)               <---------ALFIN1         <---------YAB1         --------->GLK1(2)               --------->MYB46(3) <---------MYB52(1)  --------->ARR14(2)                        ------>MYB83                  <------ZmHOX2a(1) ----ANAC58        ----------->ARR10      ---------->DOF2 <-----------GT1        <-----------GT1 ----ANAC58 <---------WOX13(1) <---------GLK1(2) >>>>>>>>>TBF1 ------>MYB46(1)  <XXXXXXXXXXXXXXXXXXXXMIR2938   tcggttttgtcttgattggaccagattttctgagaatctgaatagaaagaagaagaagataaaccaaacaccccctccccttgaaacctttcaaaggata  18627100               --------->MYB46(3)                                                             XXXXXXX           ------>ZmHOX2a(1)                                                         ------>ZmHOX2a(2)        ------>NtERF2                                                               <------ZmHOX2a(2)       --------->DEAR3(1)                                   --------->TOE1(3)      --------->ARR11(3)    --------->DEAR3(1)        --------->At5g28300          --------->ZAT6          <---------ARR11(3)   <------NtERF2----------->RAV1(1)                      <-----------GT1          <---------GLK1(1)   --------->ATERF1(1)       ----------->GT1        --------->AHL20(2)            --------->GLK1(1)  <---------ATERF1(1)     --------->MYB52(1)   --------->LBD16              <xxxxxxxxxxxxxxxxsmallRNA(i)   agggcatcgcctcctcaacaacacagagtaactgtaaaaacaaaaaacccagaaaaaaataaccctagagagagagagagagagagatctcaagaacaga  18627200                                                     --------->ANAC58                               <                                                     --------->ANAC46                             ---                                                     --------->ANAC58                            <---                                                    <---------LBD16   --------->ANAC58           ----                                                    ------->TEIL     ------->MYC2               <----                                                  <---------SPL7     <-------MYC3               <----                                                <---------------AtSPL3--------->ANAC58          -----           ---------->DOF2                      <---------TOE2(3)    ------->MYC3              <-----       ----------->RAV1(1)                      <---------------AtSPL8--------->AtLEC2         <-----      <----------ID1                           <------------------SPL14  ---------->DOF2   <---------WOX13(1) ---------->DOF2                           <---------MYB46(3)        <-------MYC2         <---------- XXXXXXXXXXXXX>MIR415    *TSS              ----------->GT1 ---------->DOF2              <---------YAB1   acagaaagacaacaaaagaagagagagagaggttatgtctcagagtggttaatgtacggaagaaagaaacacatgcaaagctcaaaacttgtaattggcg  18627300              <---------ICU4                                                                 --------        --------->TOE2(3)                                                                   ---------    <----------DOF2                                                                      ----------->TBP <---------ALFIN1                                                                     --------->AHL20(1) ---------ALFIN1                                                                      <---------ARR11(3) ------>RAP2.3(3)                                                                     <---------AHL20(1) ---NtERF2--------->AHL20(2)                                                     <------------------- ----->ATERF1(1)                                                                 --------->ZAT18 -----ATERF1(1)                                                               <---------ANAC58 -----RAP2.3(1)  <-----------GT1                                              <---------ANAC58 ->NtERF2 <---------AHL20(2)                  <----------DOF2                 <---------ANAC46 ----ANAC58   --------->AHL20(2)          <----------DOF2      <---------At4g35610   <-----------TBP ----ANAC58   <---------AHL20(2)   <-----------GT1<-----------GT1            <-----------------------TaNAC69(2) --CBF  <----------DOF2<----------DOF2<----------DOF2<----------DOF2         <-------TEIL<---------AHL20(2)   ccccaactttctttaattttttcttctttctctaaaatcactttctttcttttttctttctctgtagctgttatatggatgcgtgcaatatataaaaagt  18627400                                                               <------------------------ANAC81      <---------ICU4                                           <---------YAB1     <---------YAB1                           <-----------TBP <-----------GT1     ------------>CBF                 <----------DOF2      <---------KAN4(2) ->DAG2                            --------->ARR11(3)    <------ZmHOX2a(1)     <----------DOF2 ->DOF2                            <---------ARR11(3)  <---------TOE2(3)    <-----------GT1 --WRI1                           <---------CCA1(2)  --------->ICU4   <----------DOF2           -----   ggtcttcatcaatgctctatctctctctctctctctaaatcttttggtttttgtaataaggaattttcatttcttttttttctttctggtttctcgtcct  18627500                                                          --------->YAB1                                                         <---------YAB1                                                         <---------ATHB12                                                         --------->ICU4                     ---------                    --------------->AtSPL3             --------->bZIP60(1)               ----------->HVH21                    <---------------AtSPL3             <---------bZIP60(1)             --------->ANAC55(2)       <---------ANAC58                   <---------ANAC58<---------ICU4               <---------ANAC58       <---------ANAC58                   <---------ANAC58--------->ATHB12             <---------ANAC55(2)       <---------ANAC46                 ------->TEIL  ------------>ATHB5       <---------ARR14(2)  --------->ALFIN1  --------------->AtSPL8<---------ANAC55(1)                  --------->ARR14(2)  <-----------RAV1(1)   ------->TEIL    <---------At5g28300          <-----------ARR10 <---------ANAC58 ->ZmHOX2a(1)       <---------------AtSPL8<---------ANAC46-------->ATHB1      --------->GLK1(1) -----   ctatgtgtggcttatgtctgtagatgtacttatctacatatgtaccgtgttcttgtgccatcattgtcgagtctcttcgcaaatccagcgcgtgactcta  18627600                                                  <---------ANAC58                                                  <---------ANAC46                                                  <---------ANAC58                                             --------->MYB52(2)                                          --------->At5g28300            <---------TOE2(3)                                          <---------RAP2.6(3)       --------->YAB1 >ZAT6  --------->REM1(1)   <----------DOF2<---------MYB52(1)      <---------YAB1 ---->ZAT14         ---------->ID1        <---------SPL7    --------->YAB1     <---------------AtSPL8   ctctccccctacaacttaatttgtcttactctttcaattttggccgtaagttgcttcttctatagtactattatagaggtttgtgtacgagctaattcta  18627700  Previous    Next  AGI:  At2g45160.1    Description:  scarecrow transcription factor family protein. similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G60630.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24542.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 18624937    to: 18627225    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g45161.1    Description:  unknown protein Range:  from: 18627540    to: 18627665    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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