Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 --------->ANAC58                                             ---------->DOF2                                       <-                                <-----------RAV1(2)                             --------------->AtSPL8                    <---------YAB1         --------->ANAC58                     <---------------AtSPL8                  <---------AHL20(2)       --------->ANAC58                 <----------DOF2       <--                 --------->AHL20(2)        <------NtERF2               <---------GLK1(1)         <--- -ZmHOX2a(1)   --------->ARR11(3)         ------>NtERF2          <---------MYB46(3) <-------TEIL <--- ->ANAC58      <---------ARR11(3)        <---------ANAC46       <---------AtMYB61   ------->TEIL----- ->ANAC58  ---------->DOF2   <------ZmHOX2a(1) --------->ANAC58 --------->ALFIN1<---------------AtSPL3   cctctcggataacaaaagatttaatattgcaggaccagttgaggcgcgaaagcaagagaagtaagagtggtggaatccctttcatgtacgttcttctggt  18620000                                                 ------>ZmHOX2a(2)                                                <------ZmHOX2a(2)                                               --------->ARR11(3)                                               <---------ARR11(3)                                               --------->ARR14(2)       ----------->GT1       <---------YAB1    <---------ARR14(2) <---------MYB59       <-------TEIL           <---------At4g35610 -----NtERF2     ------>ZmHOX2a(1)            --------->At4g35610                        ---------->DOF2 -------DEAR3(2) --------->LBD16        --------->ICU4                              --------------->AGL15 ------RAP2.6(2)--------->TOE1(2)   ===================HOX2a_HOX2a           ---------->DOF2 ------DEAR3(1) --------->TOE2(2)   <------ZmHOX2a(1)        --------->ARR14(2)   ----------->GT1  -- ---->RAP2.6(3) <---------LBD16     ====================HOX2a_HOX2a  ---------->DOF2<---------------AGL15   cggcctaatcggtttaatcctgggatacattatgaagaggacatgatcagatcccttcaacaaaatactccaaaagtctcaaagtgcttaaaaaagcatt  18620100                                                                    <---------MYB46(3)            ---                                --------->GLK1(2)          --------->AtLEC2                       <--                                <-----------ARR10      <-----------HVH21                  <-------GAMYB                   <---------ANAC58                    <-----------TGA1                  <---------ANAC58      --------->ANAC58      <------ZmHOX2a(1) <---------DAG2        ----------->GT1      <---------ANAC58      --------->ANAC58   <------ZmHOX2a(1)    <----------DOF2    <----------DOF2        <---------ZAT18    ---------->DOF2<---------ANAC46      --------->At4g35610    <---------DAG2          --------->ZAT18 -------->DOF2     <---------ANAC58      <---------At4g35610  ------->TEIL --------->GLK1(2)     <---   gaaaaggaaagaaatcaaattgtgtgaggaggacaatcttctcttctgccttatcgtcgtcatgcacctttggttaaaatctgaacttagtgcgttagag  18620200                                                    ------>ZmHOX2a(1)               <---------HSFB2a(2)           <---------DAG2        <---------TOE2(3)                    <----------DOF2       <---------At5g28300             <-----------ARR10      <-----------GT1                  --------->ARR11(3)                <---------ZAT14 ------>ARR14(2)                       <---------ARR11(3)                --------->ZAT14 -------ARR14(2)               <-----------HVH21 <-----------GT1    <----------DOF2    <----------DOF2 ---ZmHOX2a(1) --------->HSFB2a(2)    <---------GLK1(2)       <-----------GT1<---------ZAT6   gatttgtattacggtttccataagacttagaattgtcacaaaatctcctttttcctctctcttattacaactttgtgtagtcttaaacacttttgtttct  18620300                                                                    <------------CBF                                                                   --------->ATHB12                                                                   <---------ICU4                                                                   --------->YAB1                                                                  <---------YAB1   <---------ARR14(2)                                                              <---------DAG2       --------->ARR14(2)                 <---------DAG2            --------->DAG2    <------NtERF2        <------ZmHOX2a(1)                 <----------DOF2          ---------->DOF2<-----------HVH21       ----------->GT1              <-----------GT1<---------CCA1(2) >>>>>>>>>NAM ------>NtERF2       *TSS--------->CCA1(2)   tcgtcttctctcatcttaactttttctctccatctctcatagaataaagggatgaaacatgtcgccttatcattgttttagtgaggatacaaagactcta  18620400                      ----------->RAV1(2)                 --------->ZAT6               <-----------GT1         --------->At4g35610         --------->HSFB2a(1)  <---------ARR11(3)         --------->HSFC1(2)   --------->ARR11(3)         <------MYB83-------->P       <---------TOE1(2)                         <---------ARR14(2)         <------MYB46(1) --------->TOE1(1)                              ------>MYB46(1)         <---------HSFC1(2)  --------->REM1(1)             ------>NtERF2------>MYB83             ----         <---------HSFB2a(1)<-------TEIL                  --------->DEAR3(1)    --------->ARR14(2)---   aataagtcggaaggttctaactctacctggtacatcttcgtagctacaaaacaaaactcgccgagacattaaccaaatgacaaatacgaacacactcttc  18620500                                                                    --------------->AGL15                     <---------GLK1(2)                              <---------------AGL15           <---------YAB1                                          <-----------------AGL1           --------->ICU4                              <---------DAG2         --------->YAB1                                <----------DOF2        --------->ICU4   <---------YAB1              ------>ZmHOX2a(1)        <---------YAB1--------->GLK1(2)           ---------->ID1   ----------------->AGL1     --------->ICU4  <---------ARR11(3)           <-----------GT1  ----------------->AG           <-- ----->TOE2(3)       --------->ARR11(3)          <-----------GT1 <-----------GT1               ------ --->ZmHOX2a(1)     <---------RVE1(1)        <------------------------ANAC81                  <------   ctcagacatgatgatgattcagagattttgatttttcaagaaaactctgtttttcctctttttgtttttgcctcttggggcatttggagagcaatggcga  18620600                                                                                                    -                                                                                                   --  --------->At4g35610                          <-------TEIL                                 <--------  <---------At4g35610                         <---------MYB52(1)               <---------DAG2      <- --------DOF2                               <---------ANAC58                   <----------DOF2------- >NtERF2                                    <---------ANAC58             ---------->ID1  <---------DEAR3(1) ---RAP2.6(2)   <-----------GT1            --------------->AtSPL3     --------------->AtSPL8<--------   cttttgctgaacttgttttatcgacttctcgctgtacatgcccttgccgttcattcactagaaaacccctaattcgtccccctttatctggtctgcgtct  18620700                                                                 --------->ANAC58                                                               --------->MYB52(1)                                                              ------>ZmHOX2a(1)                                                       <---------ANAC58           ------>MYB83                                <---------ANAC58           ------>MYB46(1)                            <------NtERF2            <---------ZAT2         --------->AtMYB61                           ------>NtERF2             --------->ZAT2         <---------MYB111(1)         --------->ETT(1)--------->LBD16 <---------MYB46(3)  <-----------HVH21         --------->LBD16         <---------ATERF1(2)   <---------ANAC58 --------->LBD16           --------->HSFB2a(2)      --------->DEAR3(1)    <---------ANAC58 -------->LBD16           ----------------->AGL1    --------->ATERF1(2)<---------MYB52(1)        <--- ------->LBD16            <---------LBD16           <---------DEAR3(1)<-------GAMYB              <--- -ANAC58 <---------MYB46(2)<---------HSFB2a(2) <---------MYB52(1)--------->ANAC58            <------- --------LBD16        <---------ANAC58   <---------GLK1(1)<---------ARR14(2)   <---------At4g35610 -->ATERF1(1)         <---------ANAC58   --------->GLK1(1)--------->ARR14(2)   --------->At4g35610 -ANAC58 <---------MYB59  <-----------------AGL1   <---------LBD16--------->DEAR3(1)         --------   ccccggtgataccaaaccattgtttcgttccggacttggtcggatttctgttagccggcgtttcctcacggccgttgctcgagctgaatcagaccagctt  18620800   --------->YAB1   <---------ICU4         <---------DAG2                 --------->TOE2(3)  --------->ICU4          <----------DOF2                <----------DOF2  <---------YAB1       <-----------GT1          --------->GLK1(2) ---MYB83       <---------TOE2(3)               --------->ARR14(2)           <---------At4g35610 ---MYB46(1)  ---------->DOF2                   <---------ARR11(3)           --------->At4g35610  <-- --ZAT2    --------->ANAC58                ------>ZmHOX2a(1)      --------->ANAC58               ---- ->ZAT2    --------->ANAC58   <---------YAB1    <---------ARR14(2)--------->ANAC58               <---   ggtgatgatgaccactcaaaggtaatcactttatgcttccttctcctcaaaatctgtaactttagaagaagcaagttttagctgagatagaaagactcat  18620900  Previous    Next  AGI:  At2g45140.1    Description:  vesicle-associated membrane protein, putative / VAMP, putative. similar to VAP27-1 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1), protein binding [Arabidopsis thaliana] (TAIR:AT3G60600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24545.1); contains InterPro domain VAMP-associated (InterPro:IPR016763); contains InterPro domain PapD-like (InterPro:IPR008962); contains InterPro domain Major sperm protein; (InterPro:IPR000535) Range:  from: 18617881    to: 18620365    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g45150.1    Description:  phosphatidate cytidylyltransferase family protein. similar to phosphatidate cytidylyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G60620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24543.1); contains InterPro domain Phosphatidate cytidylyltransferase; (InterPro:IPR000374) Range:  from: 18620380    to: 18622792    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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