Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   --------->ANAC58                                 --------->ANAC58             ---------->DOF2     --------->ANAC55(1)        ----------->RAV1(1)      --------->ANAC46                    ---------->DOF2     ------>ZmHOX2a(1)       ----------->RAV1(1)                   ------->GAMYB       <------------- --------->ARR11(3)     --------->At4g35610              ------>ZmHOX2a(1)           <---------ZAT14 <---------ARR11(3)  ----------->HVH21              <---------At4g35610       --------->At4g35610 --------->ARR14(2)--------->ANAC55(2)           ---------->DOF2----------->RAV1(1)  --------->ZAT18 <---------ARR14(2)<---------ANAC55(2)        --------->YAB1    --------->MYB52(1)   <---------ZAT18   caaaatcctgccacataaatcacatgacctgcaacacgaaattcagaataagaaagctcctaaatccaacagaaagaaacagatgagtgaacaagactta  18605100                             <---------KAN4(1)                             --------->HSFB2a(1)                             <---------HSFC1(2)                             --------->HSFC1(2)                             <---------HSFB2a(1)                             --------->KAN4(1)                            <---------KAN4(2)                           <---------DOF5.7(2)                        --------->LBD16                        --------->HSFB2a(2)                  --------->At4g35610                       --------->HSFB2a(2)            --------->ANAC58                       <---------ANAC46               --------->ANAC46                       <---------LBD16              <---------ALFIN1                       <---------HSFB2a(2)          --------->AtMYB61                   <---------ARR14(2)              --------->ANAC46                 <---------ANAC58                   --------->ARR14(2)            --------->ANAC46                   <---------ANAC58                  <----------TaMYB80             <-----------GT1                    <---------ANAC46                <---------ANAC58                 --------->ZAT6            <---------GLK1(2)                <---------ANAC58               <-----------GT1             --------->ARR11(3)        --------->ATHB12<---------HSFB2a(2) <---------ICU4   <---------At4g35610 <---------TOE2(3)       <---------YAB1 <---------LBD16      --------->ICU4--------->AtMYB61 <---------ARR14(2) --------WRI1   <---------ANAC46      --------->ANAC46--------->ANAC58   ----------->ARR10   caatgcagcatcataggggcgtattccgggaacgttcttcccacaatgtttacaccacaccatagctcccaaactcagattttgaggcttgaatcgatgc  18605200               --------->YAB1              <---------ATHB12                 <---------ARR11(3)      --------->ZAT2                           <-----------ARR10               ----------------->AGL1      --------->At4g35610          ---------->DOF2   --------->MYB46(3)   <---------GLK1(2)      <---      <---------At4g35610   ---------->DOF2    --------->GLK1(2)       --------->YAB1           <----  --------->MYB52(1)       <---------ATHB12--------->HSFB2a(2)  --------->GLK1(1)        <---------YAB1   gaaacaacagcttccaatcttactgatcaataaagcctaaagcttccaaaatctaaccaaggtcgaatttccatcagaatttccaaaattgatgaatgag  18605300         ---------->DOF2      <---------------AGL15      --------------->AGL15                                                                        --      --------->TOE2(3)                                                                            <-      ----------------->AGL1                                                                       --      ----------------->AG                  --------->ICU4                                         <-      --------->TOE1(3)                     <---------ARR14(2)                                    ---     <-----------------AG       --------->ZAT6                                                    ---     ----------------->AGL1     --------->ANAC46                                                -----     ----------------->AGL2   <-----------GT1     --------->At4g35610                           ----- ---ZmHOX2a(1)             <---------ICU4   --------->ARR14(2)         ------->TEIL             <---- ------ID1          ----------->GT1   <---------ZAT6 <-------TEIL   <---------ATHB12   ---------->DOF2   gacaaaaaccctaaaggggaagttgttaattttcacactagtggcaaatatgagatgcattctgaaacccatgaatatcgaatcacacctaaagctaata  18605400 <---------ANAC58 <---------ANAC58                                              <---------------------WRI1 ------->AHL20(1)                                         --------->ANAC46 --------ARR11(3)                                      ------>MYB83 ------->ARR11(3)                                      ------>MYB46(1)                        ------- --------AHL20(1)       --------->ANAC58               -------->P                       --------->LBD16 ------>CCA1(1)         --------->ANAC58           --------->SPL7                       <---------LBD16 ------>RVE1(1)         --------->ANAC46        <---------ANAC55(2)                 --------->GLK1(2) ---->AHL20(2) -------->P                      --------------->AtSPL3              <---------GLK1(1) ---->YAB1     ------>MYB46(1)        ---------->DOF2--------->AtMYB61             --------->GLK1(1)- -----ICU4     ------>MYB83     ---------->DOF2<---------------AtSPL3        <-----------HVH21<------   atatcttgctctaaaccaacttgcacaaggaagttaaagagaaagggaacgcgtaccaacacgacgaagaagcatacaaggtcagaaatctggggaagca  18605500                                                                                   --------->ALFIN1                                                                                <-------MYC3                                                                                ------->MYC3                                                                               <---------ANAC58                                                                               <---------ANAC46                                                                               <---------ANAC58                                                                               --------->TGA1a                                                                               --------->O2                                                                               <---------O2                                                                               <---------TGA1a                                                                              <------NtERF2                                                                              --------->LBD16                                                                              ------>NtERF2                                                                             --------->DEAR3(1)                                                                            --------->ATERF1(1)                                                                            <------NtERF2           --------->YAB1                                                  ------>NtERF2 <-----------RAV1(1)          --------------->AGL15                                            <---------RAP2.3(1)          <---------------AGL15                                            <---------ATERF1(1)         <-----------------AGL3                                           --------->ANAC58         <-----------------AGL2                        --------->bZIP60(1)--------->ANAC58     <----- <-------GAMYB                                         <---------bZIP60(1)--------->DEAR3(1)   ------ ----------->GT1          <<<<<<<<<<MYB80              <---------GLK1(1)  --------->ANAC46    <------ -->At4g35610 ---------->DOF2              --------->MYB52(1)    ------------>CBF--------->ALFIN1 ---------->GT1--------->DAG2     ------------>CBF<------ZmHOX2a(1)   --------->YAB1     --------->ALFIN1 ---At4g35610*TSS     <----------DOF2 <---------ATHB12 --------->TGA2(1)--------->At4g35610--------->ALFIN1   gagggttaaatactaataaagggactttggtttgaattcaataactagcagaggatgatatcacgaatacaatcagacgccgcgtgtgtgtgtgtggggc  18605600                                                                <---------AHL20(2)                                        --------->ALFIN1       <---------YAB1                                       --------->REM1(2)    <---------AHL20(2) <----------DOF2                                      --------->ALFIN1  <---------CCA1(2)      <---------DAG2                                    <---------ANAC58<---------ANAC58     --------->YAB1 ----ZAT18                          <---------ANAC46<---------ANAC58--------->AHL20(2) --->ZAT18             <---------MYB52(1)     <----------DOF2 <---------AHL20(2)   <-----------GT1--- ---PCF2             <---------YAB1 <---------ANAC58<---------ANAC46<---------AHL20(2)      ---------   acaagagaagatggtctctcgttctgtttgggccttaggcgtgttgggcttttgccttgtatatttttattttaatgacaacttttttccctacaaacga  18605700                                                                                          --------->At4g35610                                                                                          <------NtERF2                                                                                          <---------At4g35610                                                                                       --------->At4g35610                                                                                       <------NtERF2                                                                                     --------->ANAC58                                                                                     --------->ANAC58           --------->YAB1                              <----------DOF2            ------>NtERF2------          --------------->AGL15  --------->At4g35610   <---------DAG2             <---------SPL7   --------->AHL20(2)            <---------At4g35610<---------ALFIN1            <------NtERF2 <------   --------->AHL20(1)       <----------DOF2     <---------At4g35610           ---------->CDC5 <------   <---------AHL20(2)  ---------->ID1           --------->At4g35610         <---------ANAC58  ------- ------>AHL20(2)      <-----------GT1      <---------LBD16    --------->LBD16 <---------DEAR3(1) >MYB52(1)<---------------AGL15 <-----------RAV1(1) --------->REM1(1)       <---------ANAC58 <-------   ataaataaaatactaataagggtttttcgtctttgtgctgcatttttcggagctacactttatcccgatgtactactggctcggcgctcggcagcatcat  18605800                                                                 <---------AHL20(2)                                                                --------->AHL20(1)        --------->AHL20(2)                                                                --------->AHL20(2)       --------->AHL20(2) --------->ANAC46                                               <---------AHL20(2)       <---------AHL20(2) --->TOE2(3)                                                    <---------AHL20(1)      <---------ATHB12 ---ICU4             ------>ZmHOX2a(1)                      --------->AHL20(2)          --------->ICU4 --HAHB4             <---------------AGL15                  <---------AHL20(2)        --------->WOX13(1) -->ATHB12     <----------DOF2       <-------TEIL       <---------AHL20(2)       <---------At5g28300 --YAB1   <-----------GT1      --------->TOE2(3)        --------->AHL20(2)   <---------ICU4   <------   taaacgacagttttactcttttcctctatttagcctaaatacatgtttttggtcttatatatataatttattctttcaaaaattacagcaattaatatac  18605900                                                     --------->YAB1                         <---------AHL20(1)         <---------YAB1                         --------->AHL20(2)        <---------AHL20(2)                         <---------AHL20(2)        --------->AHL20(2)                         --------->AHL20(1)        <---------AHL20(1)                    <---------AHL20(2)           <---------YAB1                                 <----                    --------->AHL20(2)        <---------ARR11(3)                               ------              --------->HSFB2a(2)             --------->ARR11(3)       <---------AHL20(2)  ----------              <---------HSFB2a(2)  <---------ZAT18--------->YAB1      --------->YAB1   --------->AHL20(1)          <---------ANAC58      <-----------RAV1(1)--------->AHL20(1)<---------AHL20(2)<---------AHL20(2)    <---------AHL20(2)  <---------AHL20(2)   --------->YAB1         --------->AHL20(2) --------->AHL20(2)   <---------AHL20(2)   --------->AHL20(2)  <---------YAB1    ----------->GT1         --------->AHL20(2)   --------->AHL20(2)--------->AHL20(2)<----------DOF2  --------->AHL20(2)       <---------HSFB2a(2) -----GT1 <---------ANAC58  <---------YAB1--------->YAB1<---------AHL20(2)       --------->HSFB2a(2)<   catttttaaattgcttctgaaaataattttatttttgtgggcttttatgatattataataaaactagttatataatattgtttctaaaaaaaattgataa  18606000  Previous    Next  AGI:  At2g45100.1    Description:  RNA polymerase II transcription factor. similar to RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT3G09360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67477.1); similar to Os05g0305100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055147.1); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Brf1-like TBP-binding; (InterPro:IPR011665); contains InterPro domain Transcription factor TFIIB related; (InterPro:IPR000812); contains InterPro domain Cyclin-related (InterPro:IPR013763); contains InterPro domain Transcription factor TFIIB, cyclin-related; (InterPro:IPR013150); co Range:  from: 18602423    to: 18605513    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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