Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              --------->LBD16                                                                        ------>ZmHOX2a(1)       <------ZmHOX2a(1)                                              ------>ZmHOX2a(2)    <-----------RAV1(2)                                               =============================== -------DOF2                        <---------YAB1                   <------ZmHOX2a(2) --ZAT18                        <----------DOF2                     <---------ARR14(2) -ANAC58                    --------->YAB1                 --------->MYB46(3)<---------ALFIN1       < -ANAC46          --------->At4g35610                --------->YAB1 ------->TEIL             -------- -ANAC58          <---------At4g35610                <---------ICU4 --------->ARR14(2) --------->CCA1(2)   tttgtgccaggaacacagggagatgaagaatcatctttctgatacagaagcctcatcatcaactactatggatcctcccccagttcaagagatgaacact  18576600                                                                                                 ----                                                                               --------------->AGL15                                                                               <---------------AGL15                                                                              <-----------------AG                                                                  ------>ZmHOX2a(2)             -----                                                   --------->ANAC58           ----------------->AGL3                --------->REM1(1)         --------->At4g35610     ============================HOX2a_HOX2a           --------->ANAC58            <---------ATHB12         <---------ARR11(3)         --------->HSFB2a(1)           --------->ANAC58           <-----------HVH21        --------->YAB1 <-----------------AGL1      ----------->ARR10              --------->ANAC46  ----------->RAV1(1)    ----------------->AGL1 ======HOX2a_HOX2a            ------>ZmHOX2a(1)    --------->ANAC58         --------->PCF5 <---------HSFB2a(1) ------ZmHOX2a(1)      --------------------->WRI1---------->DOF2--------->ARR11(3)     <------ZmHOX2a(1) ->ZAT6  --------->CCA1(2) ---------->ID1 <---------At4g35610 <---------ATHB12<-----------------AGL3<   gaggagagaagagacgcttcatcttcttcgtcctcatccccatcatctgccaaaagccaacacaatgatctcgagatggtccctctataggaaacgttcc  18576700            <---------At4g35610         <---------At4g35610         --------->At4g35610                         <---------SPL7         --------->ZAT2                             <---------ANAC58         <---------ZAT2  <---------At4g35610        <---------ANAC58       <---------MYB52(1)        <-----------RAV1(1)            --------->ZAT14     --------->At4g35610 -->ZmHOX2a(1)      <----------DOF2    --------->REM1(2)   <---------At4g35610     --------->AHL20(2) ---->TOE2(3)<---------ANAC46          <---------ZAT14   <-----------RAV1(2) <---------TOE2(2) ---------YAB1   <---------YAB1  <-----------GT1   --------------->AtSPL3  ------>ZmHOX2a(1) --------   ttattaatctctgctgcttatgctttaagctgttttttctgtgcagagaagttttcgtaccagatgactctattgtccttaggttttaaatatgcaaaag  18576800                                                       --------->bZIP60(1)                                     <---------HSFB2a(2)                                     --------->HSFB2a(2)  --------->ATHB12                         <---------ZAT6                <---------bZIP60(1)                       <---------ZAT18           <-------TEIL  <---------GLK1(2)                   -- -->DOF2            --------->YAB1 <-----------GT1--------->YAB1------->TEIL                   <-----   tttgttctaagaacaagttcaatagtactcttaagttttacagaacttaaattcatgacttcattgaatctcttggaagaaggaagaaaactattttgtg  18576900                                                                                               ------                                                                                        --------->LBD16                                                                                        xxxxxxxxxxxxx                                                                                       --------->O2                                                                                       --------->TGA1a                                                                                       ==============                                                                                       <---------O2                                                                                       <---------TGA1a                                                                                       xxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      *TSS  ---------                                                                                      xxxxxxxxxxxxxxx               <------MYB83                                                           xxxxxxxxxxxxxxx               ----------->GT1                            <---------YAB1              xxxxxxxxxxxxxxx               <------MYB46(1)            --------------->AtSPL8                   <---------ALFIN1             <---------WOX13(1)      <---------MYB52(1) --------->YAB1           --------->ANAC58            <------------CBF       ----------->GT1     <---------YAB1            --------->ANAC58           --------->ATHB12 <---------ANAC58        <---------YAB1               --------->ANAC46        <---------AtLEC2    <---------ANAC55(2)     <---------AHL20(2) --------->AHL20(2)xxxxxxxxxxxx     --------->ANAC46       --------->ANAC55(2) =================================================bZIP_DOF ------->AHL20(2)           <---------ANAC58    <----------DOF2    ---------->DOF2--------->MYB46(3) ----YAB1 <---------YAB1    <---------ANAC46 ---------->ID1        ==============================bZIP_DOF   attaaacactgcatgattggtaaatttgtttcgtatttcgttattttgttcttttttattataaaacttcaaagtaattacacaagcacccgtggcctaa  18577000        <-------GAMYB      <---------ANAC58      <---------ANAC46      <---------ANAC58   --------->DAG2 --->MYB52(1) xxx>smallRNA(s) ===============MYC_MYB xxx>smallRNA(le3)                            <---------LBD16 xx>smallRNA(si3)                            --------->MYB52(1) xxxxxx>smallRNA(si3)                     xxxxxxxxxxxxxxxx>smallRNA(i) xxx>smallRNA(si3)                        xxxxxxxxxxxxxxxx>smallRNA(s) x>smallRNA(se3)                         xxxxxxxxxxxxxxxx>smallRNA(i) xxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxx>smallRNA(s) x>smallRNA(i)                           xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxx>smallRNA(si3)                   --------->PCF2 xxx>smallRNA(se3)                       xxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxx>smallRNA(s) xx>smallRNA(se3)                    xxxxxxxxxxxxxxxx>smallRNA(i) xx>smallRNA(fl3)                    xxxxxxxxxxxxxxxx>smallRNA(s) xxxx>smallRNA(se3)                xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxx>smallRNA(se3)             <---------PCF2 x>smallRNA(le3)                  xxxxxxxxxxxxxxxx>smallRNA(s) xxx>smallRNA(fl3)               <---------DEAR3(2) x>smallRNA(fl3)                xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xx>smallRNA(le3)              <---------ANAC46 --------->LBD16 xxx>smallRNA(le3)        xxxxxxxxxxxxxxxx>smallRNA(s) xxxx>smallRNA(le3)     xxxxxxxxxxxxxxxx>smallRNA(s)                         --------->MYB52(1) xxxx>smallRNA(fl3)    --------->ANAC58 xxxxxxxxxxxxxxxx>smallRNA(s)        ----------->HVH21 xxxxxxx>smallRNA(s2)  --------->ANAC58xxxxxxxxxxxxxxxx>smallRNA(s)       --------->ZAT2 -------->AGL1       xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <---------At4g35610 xxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(s)   --------->ZAT18       --------->At4g35610 x>smallRNA(s)  xxxxxxxxxxxxxxxx>smallRNA(s)<---------ALFIN1 <---------YAB1 ----------->TGA1 xxxx>smallRNA(l2)  <---------ATHB12xxxxxxxxxxxxxxxx>smallRNA(s)          <---------ZAT2          <-- xxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)--------->ALFIN1<-----------GT1        --------->YAB1   tggataaggcgtttgacttctaatcaagcgattgtgggttcgagtcccaccgggtgtgctattctaattttactgaagctgacgaaaacaaattagaatt  18577100                                                                <---------YAB1                                      <---------AHL20(2)      <---------ICU4                                     --------->AHL20(2)    --------->bZIP60(1)      <----------DOF2         --------->At4g35610     <---------ICU4                               <-      <---------DAG2       <---------At4g35610        --------->YAB1------>ZmHOX2a(2)          ------  --------->ANAC46      <---------AHL20(2)   <-----------HVH21--------->YAB1              --------->AHL20(2) ---------GT1     <---------ALFIN1   <---------AHL20(2)    <---------bZIP60(1)    <---------YAB1   <-   ttacccgactttttgttccctcacattttatctgctaaatttttttctgtcagtagtcatcacatcatgatccaatacaaggttatgagttataaaatgt  18577200                                                                                   --------->ZAT14                                                                                   <---------ZAT14                                                                                   --------->ZAT18                                                                              --------->WRKY12   <-----------GT1                                 <------ZmHOX2a(1)   ---------->DOF2 --------TOE2(3)                        --------->YAB1   ---------->DOF2   --------->ALFIN1 --->TOE2(3)              <---------ZAT14        --------->MYB59    <-----------GT1<---------ZAT18 --------TOE1(3)          --------->ZAT14    <---------YAB1      ------->TEIL --------->WRKY38(1)   taatgttactaattttcgcacaaatgactaaactcaaaacactgatgatgttaggaaaccaaagatgaatttacaaagtgttgactgcactaatccaaaa  18577300                                                                       <-------MYC3                                                                       ------->MYC3                                                                      --------->TGA1a                                                                      <---------TGA1a                                                                      --------->O2                                                                     <---------TOE2(2)                                                     --------->ZAT2  <---------TOE1(2)                                                     <---------ZAT2 <---------ALFIN1                                         --------->ANAC46  <---------YAB1                      <-----                                       <---------ALFIN1  <---------WRKY18(1)                   ------                                   <---------ANAC58  --------->At4g35610                 <---------At4g35610                        --------->WRKY12------->TEIL <---------At4g35610               <-----------RAV1(2)             --------->TOE1(2)     <---------ANAC58<-----------RAV1(2)<---------O2--------->ZAT14       <---------YAB1   --------->WRKY38(1)       <------NtERF2    <-----------------AGL1<---------ZAT2   cttcttgttttgataccttggacaagttgaccttcttacttgcacctcaggcctcagcttgactattgtcccacgtttggcctctgttctcaggtggtat  18577400                                                         ------>NtERF2                                                        --------->LBD16                                                       <---------ANAC58                  --------->ANAC58                     <---------ANAC58                 --------->SPL7                       --------->At4g35610           --------->AHL20(2)            <---------LBD16                  <---------LBD16               --------->LBD16    --------->YAB1<---------bZIP60(1)    <---------ARR14(2)               <-----------RAV1(2)    --------->ZAT6--------->ANAC58       --------->ARR14(2)     <---------DAG2----------->GT1   <---------ATHB12------>NtERF2 <---------ANAC58     <---------At4g35610--------->LBD16 ----ARR14(2)  ----------->HVH21 <---------ANAC58     <---------LBD16    <---------LBD16     <------- --->ARR14(2)--------->LBD16 ---------->DOF2<---------LBD16     <----------DOF2<------ZmHOX2a(1)   cccctatcagtactccagggacgccagggccaaaagcttggcatattcagggagtttgcggaccagctttatttccccagaggaaaaaaaatcacacact  18577500  Previous    Next  AGI:  At2g45010.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G51400.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42706.1); contains InterPro domain Protein of unknown function Cys-rich (InterPro:IPR006461) Range:  from: 18574985    to: 18576934    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g45020.1    Description:  pre-tRNA. tRNA-Arg (anticodon: TCT) Range:  from: 18576986    to: 18577058    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g45023.1    Description:  other RNA Range:  from: 18577231    to: 18579248    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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