Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->ANAC58                <---------WOX13(1)            ------>ZmHOX2a(2)           <------ZmHOX2a(2)           --------->GLK1(1)          <---------AGP1--------->ANAC55(2)          <---------ARR11(3)          --------->ARR11(3)                                                   <---------AtLEC2          <-----------ARR10                     --------->ANAC46               <---------ANAC58          <---------ARR14(3)                 ----------->HVH21                 <---------ANAC46          --------->ARR14(2)        --------->ANAC46                           <---------ANAC58          <---------ARR14(2)        --------->ANAC58                 ---------->DOF2         <---------CCA1(2)          --------->ANAC58--------->HSFC1(2)        --------->ATHB12     --------->ANAC58   --------->ANAC46--------->ANAC58            <------ZmHOX2a(1)     --------->ANAC58   --------->ANAC58--------->ANAC58         <-----------RAV1(2) -------->GT1<---------YAB1       <-----------RAV1(2)            <---------LBD16          <----------DOF2   atgtaacaagcagatctcattgactcacgaaatggcccaggcaagccttgacgaaacttcaaataactcaggaaagagattgcttggagagtctttccca  18563300                                                                                            <--------                                                                                            ---------                                                                                 ------->TEIL                                                                             --------------->AtSPL3                                                --------->YAB1               <---------------AtSPL8--                                              <---------TOE2(3)         --------->ATHB12    ------>ZmHOX2a(1)                                           <---------ATHB12             --------->YAB1    -----------   ----------->RAV1(2)--------->YAB1  --------->YAB1                   --------->ICU4     --------->At4g35610   atcccatctggtccaattcttcaattagactaatacacaaacacaatcaaggataacatttcaaaacgatggaatcatggaagtacctcgtctcctgcaa  18563400                                                                       --------->TOE1(3)                                       <----------DOF2    <---------AHL20(2)                                   <---------MYB52(1)    <---------AHL20(2)                                  <-------GAMYB          --------->AHL20(2) -------AGL15                    <------MYB83         <---------AHL20(2) ------>AGL15                    ----------->GT1      --------->AHL20(2)------>ZmHOX2a(1) --------->GT1                   <------MYB46(1)     --------->AHL20(2)--------->TOE2(3)    <------ZmHOX2a(1) >RAV1(2)                       --------->MYB59   <---------AtLEC2--------->HSFB2a(1)     <---------TOE2(3)   atagaaacaaaaccatacatggattaatcgaagttcggttactttgatttttgcattaatttaatcgaactatcctaaacttgagcacaaataaggaact  18563500                  ------->GAMYB                 --------->MYB46(3)                ------>MYB83                <---------CCA1(1)                -------->P                  <---------RVE1(1)                ------>MYB46(1)            <---------ARR11(3)               --------->MYB55(1)    ------>NtERF2               --------->MYB52(1)   --------->DEAR3(1)  --------->ANAC58                           --              --------->AtMYB61    <------NtERF2        --------->ANAC46                          <--              --------->MYB46(3)  ------>NtERF2         --------->ANAC58                        <----    --------->ARR14(2)  --------->ANAC58   --------->ARR11(3)        --------->TOE1(2)        <------    <---------ARR14(2)  --------->ANAC58 ----------->ARR10        <---------ALFIN1    <----------DOF2   gaaatggattcgaagaccaaccgagaacgacattgacgccgagtagatatttctgtataagccaagagacaccttcgacttggtgaggctttagagtcgc  18563600                                                                               --------->ANAC46                                                                           <----------DOF2                                                                         --------->At4g35610                                                                        --------->DEAR3(1)                                                                        --------->RAP2.3(2)                                                                       --------->ATERF1(1)                                                                      --------->ABI4(1)                                                                      <---------RAP2.3(1)                                                                      ------>NtERF2                                                                      <---------ATERF1(1)                                                                     --------->ANAC46                                                                     <---------ATERF1(2)                                                                     <---------ALFIN1                                                                     --------->DEAR3(1)                                                                     --------->ATERF1(2)                                                                     --------->RAP2.6(2)                                                                     <---------DEAR3(1)                                                                     --------->RRTF1(2)                                                                     --------->RRTF1(3)                                                                     --------->RAP2.3(2)                                                                     --------->RAP2.3(3)                                                                    --------->RAP2.6(1)                                                                    --------->ERF1                                                                    --------->ATERF1(1)                                                                    --------->RRTF1(1)                                                                    --------->DEAR4(2)                                                                    --------->RAP2.3(1)                                                                    --------->ORA47(2)                                                                   <---------ATERF1(1)                                                                   --------->At4g35610                             ----------------------->TaNAC69(2)    <---------At4g35610                             <-----------RAV1(1)                   <---------RAP2.3(1)                             --------->ALFIN1                      ------>NtERF2                           <---------ANAC46                        --------->LBD16                           --------->ALFIN1              --------->YAB1<------NtERF2                        <---------AtMYB61           <---------HSFB2a(2)--------->DEAR4(2) --------->HVH21      --------->LBD16               --------->HSFB2a(2)--------->RAP2.3(1)   -------- ---------HVH21     <---------LBD16              ------>ZmHOX2a(1)--------->ANAC46  <------NtERF2 --NtERF2         <---------ARR14(2)          ------>NtERF2<---------YAB1------>NtERF2  <-------TEIL ---DEAR3(1)   --------->ZAT14<-------GAMYB  --------->DEAR3(1)  <---------LBD16  <---------DEAR3(1)   cgtgaccccaaattcactacaatccggaggtgtgttgctaaatttcgcctccttctcgagtataatttccgccgccgcttcaagtcgccgttcatactcc  18563700                                                                       <------ZmHOX2a(1)                                                                    <---------HSFB2a(2)                        <---------ZAT18                             --------->HSFB2a(2)                        <---------ZAT14                         <---------MYB52(1)                        --------->ZAT14                       =======================================                      --------->At5g28300                     --------------->AGL15                      <------NtERF2                     --------->ANAC46                     <---------MYB46(3)                 --------->ANAC58                    <---------ANAC46<-----------GT1     --------->ANAC58 ---------->DOF2                    <---------DREB2C(2)              <---------SPL7 <---------LBD16             -----  <---------ANAC46  <---------DEAR3(1)      <-----------GT1  ----------------->AGL1            <----- ->ANAC46     <----------DOF2   <----------DOF2   <-----------HVH21<---------ANAC46           <------   atcgtcgtggaagggacttttggcggtgaactctcttttgacattttttcttcgtcatacgctaccgtttcgaggaaaagaaccgagaccggttgaaccg  18563800                   ----------->GT1                  ----------->GT1                 --------->DAG2                ---------->DOF2               <---------ANAC46             --------->LBD16               <---------O2                            --------->ARR11(3)           <---------LBD16                 --------->O2   <---------CCA1(2)        <---------ARR11(3)  --------->AHL20(2)          --------->At4g35610       <---------ANAC58           <---------GLK1(2) ============================MADS_MADS     --------->bZIP60(1)                <----------DOF2       - ---->LBD16----------------->AGL1          <---------bZIP60(1)        <---------AHL20(2)            < ----LBD16 <-----------------AG ------------>CBF      <-----------GT1 <---------YAB1                < ---LBD16  <-----------------AGL1       --------->ANAC46<---------ANAC58<------------CBF        -----   ggaattaactaagaccggaaaaggaaaatagaagctcaataaacgacgtcgtttattttcgtctctcgtttttttattgactttagatttttgttttaaa  18563900                   --------->AHL20(2)           <---------WRKY18(1)    ----------->TBP         <---------WOX13(1) --------->AHL20(2)        <------------CBF   --------->AHL20(2)       <<<<<<<<<RAP2.2     <---------AHL20(2)      <---------YAB1      <---------WOX13(1)      <---------TOE2(3) --------->ATHB12 <---------ICU4    --------->AHL20(1) <---------AHL20(2)<---------AHL20(2) <--------ATHB1    <---------ARR11(3)             --------->AHL20(2)                    <---------HSFB2a(2) --------->AHL20(2)--------->ARR11(3)             <---------AHL20(2)               <-----------GT1 --------->ATHB51  <---------AHL20(1)            --------->AHL20(2)          <---------AHL20(1) -------->ICU4    --------->AHL20(2)     --------->AHL20(2)                  <---------AHL20(2) ---------ATHB51------>MYB83<---------AHL20(2)   <---------AHL20(2)          --------->AHL20(2) ---------ATHB12------>MYB46(1) --------->YAB1--------->AHL20(2)         --------->AHL20(2) ------->CBF  <---------MYB59 <-----------TBP--------->AHL20(2)          <---------AHL20(2)   caataatttagattgaccaaatatattgatttatttataaaaaaaaaataaaaaaatttgataaacgacttatatttattttattttactcgagaaatta  18564000                                                                                                <----                                       --------->DOF5.7(2)                     ----------->GT1  -----                                      --------->TOE2(3)                     --------->DAG2      -----                                <---------AHL20(2)                      --------->YAB1         <-----                                <---------YAB1  <---------ICU4         <---------ATHB12     <--------           --------->ANAC46    --------->AHL20(1)                   --------->AHL20(2)     --------->ARR11(3)           <---------ETT(1)    --------->AHL20(2)                   <---------AHL20(2)     <---------ARR11(3)       <---------GLK1(1)       <---------AHL20(1) <---------YAB1   --------->AHL20(2)     --------->YAB1       --------->GLK1(1)   <------NtERF2       <---------ATHB12--------->AHL20(2)        <---------TOE2(3)   ctaaaatggatttccgacatgaagttggccgaatataattcgttaacaaatcattttaggtgctataaaataaatcataaggggaaatactaagataatt  18564100                                                                             --------->ARR14(1)                                                                             --------->GLK1(2)                                                                            --------->ARR11(1)                                                                            <---------GLK1(2)                                                                    <-----------HVH21                                                                    <-----------TGA1                                                                    <<<<<<<<<<<AtbZIP1                                                                   --------->TGA1a                                                                   <---------TGA2(1)                                                                   --------->TGA2(1)                                                                   <---------TGA1a                                                                   <---------bZIP60(2)                                                                   --------->bZIP60(2)                                                                   <---------bZIP60(1)                                                                   --------->bZIP60(1)                                                                   <---------ANAC58                                                                   --------->O2                                                                   <---------ANAC58                                                                   <---------ANAC55(2)                                                                   <---------ANAC46                                                                   <---------O2                                                                  <-----------STF1                                                                ----------->TGA1                                                                ----------->HVH21                                                               <-----------HVH21                                                              <---------ANAC58                                                              <---------ANAC46           ------>NtERF2                           ---------->DOF2                    <---------ANAC58<-------TEIL--------->At4g35610        --------------->AGL15                               <------MYB83  ----------->ARR10        <---------------AGL15                               <------MYB46(1) --------->ARR14(2)       ----------------->AGL2 --------->HSFC1(2)           <---------AtMYB61<---------ARR14(2)      <       ----------------->AGL1 --------->HSFB2a(1)    <---------ANAC46   <---------At4g35610       ---  ---------->DOF2          ==================================================bZIP_DOF----------->HVH21 -----AHL20(2)          --------->YAB1               <---------ANAC58   --------->At4g35610      <--- ---->AHL20(2)       <---------ICU4                  --------->ALFIN1 <-----------RAV1(2)<---------DEAR3(2) ---->YAB1           --------->YAB1                  <---------ANAC58--------->TGA2(2)  <---------DEAR3(1) ----YAB1    <---------LBD16  <---------HSFC1(2)  --------->ALFIN1----------->STF1  <------NtERF2---- -YAB1 <-------TEIL --------->ICU4 --------->HSFB2a(2) --------->ALFIN1 <---------ZAT2  <---------RAP2.3(2)   atatgaaagtccatttggggaaataatcacaaagcttccaaaatacagacaagtggtgtggatggtgtgacgtcagcagattcggcatcgacggctcaaa  18564200  Previous    Next  AGI:  At2g44980.1    Description:  transcription regulatory protein SNF2, putative. similar to CHR5 (chromatin remodeling 5), ATP binding / DNA binding / chromatin binding / helicase [Arabidopsis thaliana] (TAIR:AT2G13370.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70580.1); similar to SNF2P [Triticum turgidum] (GB:ABR18490.1); similar to SNF2P [Oryza sativa (japonica cultivar-group)] (GB:AAN14536.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain DNA/RNA Range:  from: 18559515    to: 18563744    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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