Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   <------MYB46(1) <------MYB83 --------->ANAC55(2) -------->MYB59 -------->MYB111(1) -------------->AtSPL8 ---------------AtSPL8 -------->MYB52(2)                                                                      <-----------GT1 -------->MYB46(2)                                               <---------GLK1(2)----------->GT1 ---------->ARR10                                        <---------GLK1(1)    --------->GLK1(2) -------------->AtSPL3                                   --------->GLK1(1)    <---------ARR14(2) --------MYB55(1)                                   <---------LBD16           --------->ARR14(2) -------MYB52(1)                <---------------AGL15 --------->LBD16      --------->ANAC58 ------P            --------->YAB1                 --------->MYB52(1)      --------->ANAC58 --------HVH21   ----------->RAV1(1)             --------->ARR14(2) --------->YAB1--------->LBD16  <- ----------AGL1<-------TEIL<----------DOF2       <---------ARR14(2)<-------TEIL <---------LBD16    <-   gttaggtactctatagatgcaacaatactctttgctaaacgaagaaggccatataccggaaatctcagattcatagcaagaatccggtttatacggttta  18538400                                                                                               ------                                                                                             <-------                                                                                            ---------                                                                                            <------ZmHOX2a(2)                                                                                            ---------                                                                                           --------->ARR14(2)                                  <---------ANAC46                                         <---------GLK1(2)                                  <---------ANAC58                                         --------->ARR11(3)                                  --------------->AGL15          ------>ZmHOX2a(1)         <---------ARR11(3)                                  --------->ANAC55(2)            ==================================HOX2a_HOX2a                                  <---------ANAC55(1)       <---------GLK1(1)              --------->AGP1                                  <---------ANAC55(2)       --------->GLK1(1)              <---------ARR14(2)                           <---------At4g35610           --------->ANAC58              --------------                           ----------->RAV1(2)           --------->ANAC46            <-----------GT1                           --------->At4g35610           <---------ANAC55(2)       <----------DOF2                           --------->ZAT2                --------->ANAC55(2)     ------>MYB83------>ZmHOX2a(2)                           <---------ZAT2                --------->ANAC58        ------>MYB46(1)              <---------ICU4      <---------ANAC58    ==================HOX2a_HOX2a<---------DAG2            --------->GLK1(2)<---------MYB46(3) --------->MYB52(1)              <---------ALFIN1 ----------->HVH21  <----------DOF2           --------->MYB46(3) ===================================HOX2a_HOX2a --------ANAC58    <---------ANAC58  --------->REM1(2)<------ZmHOX2a(2)        --------->MYB46(3) --------ANAC58    <---------ANAC58--------->LBD16<---------ATHB12           -------->P<-------------   gtcgtgacagaaacaatctttgctttctcagctgttccgtgtttagaaaccaatggatcacgaaatccttcgctccatctacccactttaccagatccgg  18538500                                                  <---------MYB46(3)                                         ------>ZmHOX2a(1)                                       ------>ZmHOX2a(2)                                       ==============================HOX2a_HOX2a                                      ===============================HOX2a_HOX2a                                      <------ZmHOX2a(2)                                     <---------ARR11(3)                                     <---------ARR14(2)                                     --------->AGP1<-------GAMYB  --------->ANAC58                                     <---------GLK1(2)            --------->ANAC46                                  <---------HSFB2a(2)      <---------------AGL15                                  --------->HSFB2a(2)      ==========================================                                  <---------HSFC1(1)<--------P    --------->ANAC58                                  --------->HSFC1(1)<---------MYB52(1) --->LBD16                        >>>>>>>ZML2   --------->At4g35610 --LBD16                   <---------ANAC46     <---------At4g35610 >CCA1(2)         <---------At4g35610--------->ARR14(2)<---------ANAC58 >ARR14(1)        --------->At4g35610--------->ARR11(3)<---------ANAC58    --------->ARR11(3) --->AGL1 --------->TOE2(1)<---------ANAC58    ------------>AtMYB77        <---------ARR11(3) ----AGL1 --------->TOE1(1)<---------ANAC58 <-----------HVH21 ------>ZmHOX2a(1)   tttcattctccctcgtacttagctgtattccttgttctagatcctccatcagcggttgcttctcctacaagtaagaagacattttgaaacttcatttatc  18538600             --------->YAB1              <---------AHL20(2)   ------------------------>ANAC81         <---------YAB1                  --------->AHL20(1)   --------->ALFIN1       --------->YAB1                    --------->AHL20(2)--------->DAG2      <---------YAB1                    --------->AHL20(2)---------->DOF2   <---------AHL20(2)       <----------DOF2             <---------------AGL15----------->GT1  --------->AHL20(2)        <---------DAG2            <-----------GT1---------->DOF2          ------- =======================================================================MADS_MADS          <---------   taaattttatgataatcagagataattctgcttttttttaaaaaaaattgttcaatttacaaaagtggaagaaaagaagaagataaatgaattctttgat  18538700                                 --------->HSFB2a(1)                                 <---------HSFB2a(1)                                 --------->HSFC1(2)                                 <---------HSFC1(2)                                ------->TEIL                                               <-------MYC2                             --------->TOE1(1)                                             <-------MYC3     <---------ICU4         <---------HSFB2a(2)                         --------->ARR11(3) ------->MYC3    --------->ICU4 <---------TOE1(3)                                    <---------ARR11(3) ------->MYC2    <---------YAB1 <---------TOE2(3)                                 <---------TOE2(3)    --------->ANAC58  --------->YAB1   --------->MYB59             --------->At4g35610  --------->MYB52(1)    --------->ANAC58 -->YAB1<---------AHL20(2)  ------>ZmHOX2a(1)------->TEIL   <---------ZAT6         ---------->DOF2 <- -DOF2  --------->AHL20(2)  --------->HSFB2a(2)<---------At4g35610<---------MYB52(2)     <-------TEIL   aaaaacataattaaacaaatttaggttttcctcgaaccttggccatgtatgctgatatagaagtgataactaacgatatttggattaaaggcacgtttct  18538800                                                                          <---------ANAC58                                                                          <---------ANAC46                                                                          <---------ANAC55(1)                                                                          --------->ANAC55(2)                                                                          <---------ANAC55(2)                                                                          <---------bZIP60(1)                     <---------ANAC58                                     <---------O2                     <---------ANAC46                                     <---------TGA1a             --------->AHL20(2)                                           --------->TGA1a             <---------AHL20(2)                                           <---------bZIP60(2)            --------->AHL20(2)                                            --------->bZIP60(1)         <---------AHL20(2)                                               <---------ANAC58        --------->AHL20(1)                                     <------ZmHOX2a(2)        <---------AHL20(1)       --------->ANAC58             <---------ARR11(3)      <---------ARR11(3)         --------->ANAC46             --------->ARR11(3)<---------ZAT6      --------->ARR11(3)         --------->ANAC58     ----------->TBP     --------->O2      <---------AHL20(1)   *TSS<-----------GT1        <---------YAB1     ----------->STF1          -- ---------DOF2       <---------ANAC58             <-----------TBP      ----------->TGA1            --   tctttgaatatatatttaattgtgcgtgggttttcacaccacgaggttagggatttataaataagatcacaaaatgacgtgagtgtgaagctatctaatt  18538900              <---------ANAC58              <---------ANAC58          <------------CBF        <---------AHL20(2)                            <----------DOF2              --------->LBD16     --------->AHL20(2)           <-----------GT1    --------->TOE2(3)       --------->At4g35610     <-----------TBP <----------DOF2          <-----------GT1              --------->YAB1 ------->ANAC58 <---------At4g35610       <---------DAG2              --------->AHL20(2)            < ------->ANAC58 --------->At4g35610       <----------DOF2             <---------AHL20(2)         <---   caagcatttttatattgcttctgccttagggaaatttatcccaacttttttcattcctttatatgtttctgtttaaatcatcttccgagcaaagaattat  18539000       ----------->GT1                   --------->LBD16       --------->At4g35610              --------->ANAC58                           <-----------RAV1(2)     <------ZmHOX2a(1)                  --------->ANAC46               --------->ANAC46   >>>>>>>GRF7--------->YAB1            --------->ANAC58               --------->ANAC58  <-----------RAV1(2)        ---------->DOF2                           --------->ANAC58 -----------HVH21  --------->MYB46(3)  <---------LBD16              ------>ZmHOX2a(1) ------At4g35610 ------------------------>ANAC81         ----------->RAV1(2)      ------>ZmHOX2a(1)   gctgtcaggaggtgaagaataacaaacaaacaaaagtccaacgcggaacacattggaccatctgatgttcctcacacaagtttcctcaggtttcttaaca  18539100                                                                                               ------                                                                                       --------->TOE2(3)                                                                                       --------->YAB1                                                                            <-----------HVH21  ------                                                                           ------->GAMYB     <-------                                                                       --------->REM1(1)  <----------                                                                   --------->At4g35610 --------->TOE1(3)                                                                   <---------At4g35610<<<<<<<<<ARR2                       >>>>>>>>>>>>>>>>>LFY                      <------NtERF2        <<<<<<<<<ARR1              <---------YAB1                                   <---------DEAR3(1)    --------->GLK1(2)            --------->YAB1                                     --------->ETT(1) --------->ANAC58           <---------ATHB12      <----------DOF2             <-----------HVH21  --------->ANAC58   gttactagagcccatcataatatcagcccattgggctttaagtctgcccctatatatcatttgggtcggagctacaactgtcaagacaatcttaaccaaa  18539200                                                       ----------->HVH21                                                     --------->At4g35610                                                     ----------->GT1                                                     <---------At4g35610                                                     --------->ANAC55(2)                                           --------->ATHB51                                           <---------AHL20(2)                     <----------DOF2       <---------ICU4               <----------DOF2            --------->ICU4            <----------DOF2            --------->AHL20(2)          --------->ABI4(2)      --------->ANAC58    <---------ANAC55(2)      <---------RRTF1(3)         --------->ANAC46   >>>>>>>GRF7                         <-----------GT1      <---------RAP2.3(3)        --------->ANAC58  <-----------RAV1(2)          <---------DAG2 >MYB83<---------RAP2.3(1)   --------->ATHB12    <-----------HVH21              <----------DOF2 >MYB46(1)------>NtERF2      --------->YAB1--------->AHL20(2)                <-----------GT1 --MYB59 <---------DEAR3(1) <---------ATHB12--------->AHL20(1)    <---------ANAC58      --------->MYB52(1) -GT1 <---------DEAR3(1)  --------->WOX13(1)<---------AHL20(2)    <---------ANAC58     <-----------GT1   ctacaatttcggcgcttctttttctttccaatcataggcaactaattattttgtcaggtgatactgatacttgccatgttaacttttttttaacggtttc  18539300  Previous    Next  AGI:  At2g44930.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G28580.1); similar to At1g67150-like protein [Arabidopsis lyrata] (GB:ABY59108.1); contains InterPro domain Protein of unknown function DUF247, plant (InterPro:IPR004158) Range:  from: 18536598    to: 18538827    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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